DY260335

Overview
NameDY260335
Unique NameDY260335
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1264
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_RHILO (ATP synthase subunit alpha OS=Rhizobium loti GN=atpA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.856e-28
Identity = 68/128 (53.12%), Postives = 93/128 (72.66%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSIT---PDLL------QALLGGLTNERKMELEPFLKQSA 357
            AMK+V GS+K ELAQYRE+AAFAQFGSDLDAATQ LLNRG+RLTE+LKQPQ++PL  E+Q+ VI+A VNG+ D++P+ ++ ++E  +LS +     D+L      +AL   L  + K E++ F K  A
Sbjct:  382 AMKQVAGSIKGELAQYREMAAFAQFGSDLDAATQRLLNRGSRLTELLKQPQFSPLKTEEQVAVIFAGVNGYLDKLPVNQVGKFEHGLLSHMRAAGKDVLDAIRKEKALSDDLRAKLKAEIDAFAKTFA 509          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_PONAB (ATP synthase subunit alpha, mitochondrial OS=Pongo abelii GN=ATP5A1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.856e-28
Identity = 66/109 (60.55%), Postives = 84/109 (77.06%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKM 327
            AMK+V G++KLELAQYREVAAFAQFGSDLDAATQ LL+RG RLTE+LKQ QY+P+ IE+Q+ VIYA V G+ D++   KI ++E A LS +     QALLG +  + K+
Sbjct:  425 AMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVVSQ-HQALLGTIRADGKI 532          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_PANTR (ATP synthase subunit alpha, mitochondrial OS=Pan troglodytes GN=ATP5A1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.856e-28
Identity = 66/109 (60.55%), Postives = 84/109 (77.06%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKM 327
            AMK+V G++KLELAQYREVAAFAQFGSDLDAATQ LL+RG RLTE+LKQ QY+P+ IE+Q+ VIYA V G+ D++   KI ++E A LS +     QALLG +  + K+
Sbjct:  425 AMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVVSQ-HQALLGTIRADGKI 532          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_HUMAN (ATP synthase subunit alpha, mitochondrial OS=Homo sapiens GN=ATP5A1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.856e-28
Identity = 66/109 (60.55%), Postives = 84/109 (77.06%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKM 327
            AMK+V G++KLELAQYREVAAFAQFGSDLDAATQ LL+RG RLTE+LKQ QY+P+ IE+Q+ VIYA V G+ D++   KI ++E A LS +     QALLG +  + K+
Sbjct:  425 AMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVVSQ-HQALLGTIRADGKI 532          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_SPHWW (ATP synthase subunit alpha OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=atpA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.731e-28
Identity = 70/128 (54.69%), Postives = 87/128 (67.97%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSIT---PDLLQA------LLGGLTNERKMELEPFLKQSA 357
            AMKKV GS+KLELAQYRE+AAFAQFGSDLDA+TQ LLNRGARLTE+LKQPQ+ PLP E+Q+  I+A VNG+ D +P   + ++E   L+ +     D+L A      L    T   K  LE F+K  A
Sbjct:  382 AMKKVAGSIKLELAQYREMAAFAQFGSDLDASTQRLLNRGARLTELLKQPQFQPLPFEEQVASIFAGVNGYLDSIPTNAVTRFEAGFLAEMRSKHADVLAAIRDSKDLSADSTAALKSALEAFVKTFA 509          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_SINMW (ATP synthase subunit alpha OS=Sinorhizobium medicae (strain WSM419) GN=atpA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.731e-28
Identity = 60/89 (67.42%), Postives = 77/89 (86.52%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILS 267
            AMK+V GS+K ELAQYRE+AAFAQFGSDLDAATQ LLNRGARLTE+LKQPQ++PL  E+Q+ VI+A VNGF D++P+  + ++E+ +LS
Sbjct:  382 AMKQVAGSIKGELAQYREMAAFAQFGSDLDAATQRLLNRGARLTELLKQPQFSPLKTEEQVAVIFAGVNGFLDKLPVADVGKFEQGLLS 470          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_RHOP2 (ATP synthase subunit alpha OS=Rhodopseudomonas palustris (strain HaA2) GN=atpA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.731e-28
Identity = 60/89 (67.42%), Postives = 76/89 (85.39%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILS 267
            AMKKV G +K ELAQYRE+AAFAQFGSDLDA+TQ LLNRGARLTE+LKQPQ++PL +E+Q++VIYA VNG+ D +P+ K+  +E  +LS
Sbjct:  383 AMKKVAGKIKGELAQYREMAAFAQFGSDLDASTQRLLNRGARLTELLKQPQFSPLKMEEQVVVIYAGVNGYLDALPVAKVRAFEDGLLS 471          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_RHISN (ATP synthase subunit alpha OS=Rhizobium sp. (strain NGR234) GN=atpA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.731e-28
Identity = 59/89 (66.29%), Postives = 78/89 (87.64%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILS 267
            AMK+V GS+K ELAQYRE+AAFAQFGSDLDAATQ LLNRGARLTE+LKQPQ++PL  E+Q+ VI+A VNG+ D++P+ ++ ++E+ +LS
Sbjct:  382 AMKQVAGSIKGELAQYREMAAFAQFGSDLDAATQRLLNRGARLTELLKQPQFSPLKTEEQVAVIFAGVNGYLDKLPVNQVGKFEQGLLS 470          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_RHIEC (ATP synthase subunit alpha OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=atpA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.731e-28
Identity = 62/107 (57.94%), Postives = 86/107 (80.37%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNER 321
            AMK+V GS+K ELAQYRE+AAFAQFGSDLDAATQ LLNRGARLTE+LKQPQ++PL  E+Q+ VI+A VNG+ D++P+ ++ ++E+ +LS +  +   A+L  +  E+
Sbjct:  382 AMKQVAGSIKGELAQYREMAAFAQFGSDLDAATQRLLNRGARLTELLKQPQFSPLKTEEQVAVIFAGVNGYLDKLPVAQVGKFEQGLLSYLRSE-GSAILDAIRTEK 487          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_METS4 (ATP synthase subunit alpha OS=Methylobacterium sp. (strain 4-46) GN=atpA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.731e-28
Identity = 62/102 (60.78%), Postives = 82/102 (80.39%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSIT---PDLLQAL 297
            AMKKV G +K ELAQYRE+AAFAQFGSDLDAATQ LLNRG+RLTE+LKQPQ++PL +E+Q+ VIYA VNG+ D +P+ ++  +E  +LS++     DLL+ +
Sbjct:  382 AMKKVAGKIKGELAQYREMAAFAQFGSDLDAATQRLLNRGSRLTELLKQPQFSPLKMEEQVAVIYAGVNGYLDAIPVNRVRAFEDGLLSTLRGRHADLLETI 483          
The following BLAST results are available for this feature:
BLAST of DY260335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_RHILO2.856e-2853.13ATP synthase subunit alpha OS=Rhizobium loti GN=at... [more]
ATPA_PONAB2.856e-2860.55ATP synthase subunit alpha, mitochondrial OS=Pongo... [more]
ATPA_PANTR2.856e-2860.55ATP synthase subunit alpha, mitochondrial OS=Pan t... [more]
ATPA_HUMAN2.856e-2860.55ATP synthase subunit alpha, mitochondrial OS=Homo ... [more]
ATPA_SPHWW3.731e-2854.69ATP synthase subunit alpha OS=Sphingomonas wittich... [more]
ATPA_SINMW3.731e-2867.42ATP synthase subunit alpha OS=Sinorhizobium medica... [more]
ATPA_RHOP23.731e-2867.42ATP synthase subunit alpha OS=Rhodopseudomonas pal... [more]
ATPA_RHISN3.731e-2866.29ATP synthase subunit alpha OS=Rhizobium sp. (strai... [more]
ATPA_RHIEC3.731e-2857.94ATP synthase subunit alpha OS=Rhizobium etli (stra... [more]
ATPA_METS43.731e-2860.78ATP synthase subunit alpha OS=Methylobacterium sp.... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YC23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260335 ID=DY260335; Name=DY260335; organism=Citrus clementina; type=EST; length=1264bp
GCTATGAAAAAAGTTTGCGGTAGTTTAAAACTGGAGTTGGCACAATATCG
CGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCTGCGACTC
AGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACTGAAACAGCCG
CAATATGCGCCGCTTCCAATTGAAAAACAAATTCTAGTCATTTATGCAGC
TGTTAATGGGTTCTGTGATCGAATGCCACTAGAAAAAATTGCACAATATG
AGAAAGCCATTCTAAGTAGTATAACCCCGGATTTACTACAAGCACTTTTA
GGGGGGTTAACTAACGAAAGAAAGATGGAATTAGAACCTTTCTTAAAACA
AAGCGCTTTGCCTTACCTATGATGTAAGGCAAGGTCGCCCGCGACTGACA
AACTAAATCTCCTTTTCTTCTGAAGTCCCCTAATTATGGTATGGATCCTG
TCTCCAGTACCAATACCAATCCACAACTCATGCTTCTCTGAATACTCAGC
TATTCTTAGAAAACATTCCCTCATCTTCCTGTCACAAATTGCAGGTCTTT
ATTACACTACAACCCGTCCCCATTTGTTATCCCTAATCCTATACCCAATC
TGCTACCCAAACAACACAACCACAACTAAACAGCAGCGCCCCACCTGACG
CTACCTTCTAACCTGCCCAGGCCTTCTCATCTCTCTCCCACCCTCCCCTC
CCCGTCATCACGCTCACCTTATTCAAACTCATGACTCTCTACTTGCACAG
CAAACAGGTAACAGCCCATCCGCCTGACACAATCACTATCTTCACTACTA
CAAGCCTTCCCTCTACCACAGGACGCGCATGGACTCCTTCTATCATACAC
TACCAAACTACAACCTAAGCAACCTCTATATGAGTCAACAGAGAAAAAAA
CGACAACTTGCTACCAAACATCACGTGAGATTTAATAAAACGCCTCCCCA
CCAACAACACAAAATTCTACGTAATACACTAACTCCAGAGACTGCTCTGT
CTTTAATGCAAGACCCCTCCCTGACCCTATCTCCGTAAACTTTCCTCTCC
CCTCCACCCGCACGACGTACCTCCTACCCCCCACTCTCACTCACCCATTT
AATTTCTCTACACTCCAGCCCCCACGACAGGCGATCAATCTGAATCTGCA
CTAAATAAAGACTTACCCTCTTCGTCCCAAACATGTCCCGACCGTCTTCC
GTTGTACCCGCGCCACACCATTCTTATTTCTACCTTTAACTATTTAACTT
CACTACGCTTTGTA
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