DY260335

Overview
NameDY260335
Unique NameDY260335
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1264
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_RHOP5 (ATP synthase subunit alpha OS=Rhodopseudomonas palustris (strain BisA53) GN=atpA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.085e-27
Identity = 59/89 (66.29%), Postives = 76/89 (85.39%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILS 267
            AMKKV G +K ELAQYRE+AAFAQFGSDLDA+TQ LLNRG+RLTE+LKQPQ++PL +E+Q++VIYA VNG+ D +P+ K+  +E  +LS
Sbjct:  383 AMKKVAGKIKGELAQYREMAAFAQFGSDLDASTQRLLNRGSRLTELLKQPQFSPLKMEEQVVVIYAGVNGYLDPLPVAKVRAFEDGLLS 471          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_RHIME (ATP synthase subunit alpha OS=Rhizobium meliloti GN=atpA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.085e-27
Identity = 59/89 (66.29%), Postives = 76/89 (85.39%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILS 267
            AMK+V GS+K ELAQYRE+AAFAQFGSDLDAATQ LLNRGARLTE+LKQPQ++PL  E+Q+ VI+A VNG+ D++P+  + ++E  +LS
Sbjct:  382 AMKQVAGSIKGELAQYREMAAFAQFGSDLDAATQRLLNRGARLTELLKQPQFSPLKTEEQVAVIFAGVNGYLDKLPVSDVGKFEHGLLS 470          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_OLICO (ATP synthase subunit alpha OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=atpA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.085e-27
Identity = 62/102 (60.78%), Postives = 81/102 (79.41%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSIT---PDLLQAL 297
            AMKKV G +K ELAQYRE+AAFAQFGSDLDA+TQ LLNRGARLTE+LKQPQ++PL +E+Q++VI+A  NG+ D +PL K+  +E  +LS +     D+L A+
Sbjct:  383 AMKKVAGKIKGELAQYREMAAFAQFGSDLDASTQRLLNRGARLTELLKQPQFSPLKMEEQVVVIWAGTNGYLDALPLNKVRAFEDGLLSLLRGKHVDILNAI 484          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_METEP (ATP synthase subunit alpha OS=Methylobacterium extorquens (strain PA1) GN=atpA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.085e-27
Identity = 58/91 (63.74%), Postives = 77/91 (84.62%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSI 273
            AMKKV G +K ELAQYRE+AAFAQFGSDLD +TQ LLNRGARLTE+LKQPQ++PL +E+Q+ VIYA VNG+ D++P+ K+  +E+ +L ++
Sbjct:  382 AMKKVAGKIKGELAQYREMAAFAQFGSDLDVSTQRLLNRGARLTELLKQPQFSPLKMEEQVAVIYAGVNGYLDKLPVGKVRAFEEQLLGTL 472          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_METC4 (ATP synthase subunit alpha OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=atpA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.085e-27
Identity = 58/91 (63.74%), Postives = 77/91 (84.62%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSI 273
            AMKKV G +K ELAQYRE+AAFAQFGSDLD +TQ LLNRGARLTE+LKQPQ++PL +E+Q+ VIYA VNG+ D++P+ K+  +E+ +L ++
Sbjct:  382 AMKKVAGKIKGELAQYREMAAFAQFGSDLDVSTQRLLNRGARLTELLKQPQFSPLKMEEQVAVIYAGVNGYLDKLPVGKVRAFEEQLLGTL 472          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_HYPNA (ATP synthase subunit alpha OS=Hyphomonas neptunium (strain ATCC 15444) GN=atpA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.418e-27
Identity = 59/88 (67.05%), Postives = 76/88 (86.36%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAIL 264
            AMKKV GS+K ELAQYRE+AAFA+FGSDLDAATQ LLNRGARLTE+LKQPQY+PL +E+Q+++IYA   G+ D++ L+ + +YEK +L
Sbjct:  384 AMKKVAGSMKGELAQYREMAAFAKFGSDLDAATQRLLNRGARLTELLKQPQYSPLLMEEQVVIIYAGTRGYLDKVALKDVTRYEKELL 471          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_ERYLH (ATP synthase subunit alpha OS=Erythrobacter litoralis (strain HTCC2594) GN=atpA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.418e-27
Identity = 58/89 (65.17%), Postives = 76/89 (85.39%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILS 267
            AMKKV GS+KLELAQYRE+AAFAQFGSDLDA+TQ LLNRGARLTE+LKQPQ++P+P E+Q + I+A  NG+ D + ++++ +YE  +LS
Sbjct:  382 AMKKVSGSIKLELAQYREMAAFAQFGSDLDASTQKLLNRGARLTELLKQPQFSPMPFEEQTVSIFAGTNGYIDDVAVDRVTEYESQMLS 470          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_BRASO (ATP synthase subunit alpha OS=Bradyrhizobium sp. (strain ORS278) GN=atpA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.418e-27
Identity = 60/89 (67.42%), Postives = 74/89 (83.15%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILS 267
            AMKKV G +K ELAQYRE+AAFAQFGSDLDAATQ LLNRG+RLTE+LKQPQ++PL +E+Q+ VI+A  NGF D +PL K+  +E  +LS
Sbjct:  382 AMKKVAGKIKGELAQYREMAAFAQFGSDLDAATQRLLNRGSRLTELLKQPQFSPLKMEEQVCVIWAGTNGFLDGLPLNKVRAFEDGLLS 470          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA1_PELCD (ATP synthase subunit alpha 1/3 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=atpA1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.418e-27
Identity = 62/89 (69.66%), Postives = 73/89 (82.02%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILS 267
            AMK+V G+L+L LAQYRE+AAFAQFGSDLDAATQ  L RGARL E+LKQPQY PLP+EKQILVIYAA NG+ D  PL  + +YE+ + S
Sbjct:  374 AMKQVAGTLRLSLAQYREMAAFAQFGSDLDAATQKQLARGARLVEILKQPQYQPLPVEKQILVIYAANNGYVDDYPLTVLRRYEEELYS 462          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_ZYMMO (ATP synthase subunit alpha OS=Zymomonas mobilis GN=atpA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.851e-27
Identity = 67/124 (54.03%), Postives = 89/124 (71.77%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILS---SITPDLLQAL--LGGLTNERKMELEPFLKQSA 357
            AMKKV GS+KLELAQYRE+AAFAQFGSDLDA+TQ LLNRG RLTE+LKQPQ+ P+P E+Q++ ++A  NG+ D + +  + +YE+A+LS   S   DLL  +   G  ++E K +L   L   A
Sbjct:  382 AMKKVAGSIKLELAQYREMAAFAQFGSDLDASTQKLLNRGKRLTELLKQPQFHPMPFEEQVVSLFAGTNGYIDGIEVSDVNRYEEAMLSYMRSSHNDLLATIRETGDFSDETKSKLTAALDNFA 505          
The following BLAST results are available for this feature:
BLAST of DY260335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_RHOP51.085e-2766.29ATP synthase subunit alpha OS=Rhodopseudomonas pal... [more]
ATPA_RHIME1.085e-2766.29ATP synthase subunit alpha OS=Rhizobium meliloti G... [more]
ATPA_OLICO1.085e-2760.78ATP synthase subunit alpha OS=Oligotropha carboxid... [more]
ATPA_METEP1.085e-2763.74ATP synthase subunit alpha OS=Methylobacterium ext... [more]
ATPA_METC41.085e-2763.74ATP synthase subunit alpha OS=Methylobacterium chl... [more]
ATPA_HYPNA1.418e-2767.05ATP synthase subunit alpha OS=Hyphomonas neptunium... [more]
ATPA_ERYLH1.418e-2765.17ATP synthase subunit alpha OS=Erythrobacter litora... [more]
ATPA_BRASO1.418e-2767.42ATP synthase subunit alpha OS=Bradyrhizobium sp. (... [more]
ATPA1_PELCD1.418e-2769.66ATP synthase subunit alpha 1/3 OS=Pelobacter carbi... [more]
ATPA_ZYMMO1.851e-2754.03ATP synthase subunit alpha OS=Zymomonas mobilis GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YC23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260335 ID=DY260335; Name=DY260335; organism=Citrus clementina; type=EST; length=1264bp
GCTATGAAAAAAGTTTGCGGTAGTTTAAAACTGGAGTTGGCACAATATCG
CGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCTGCGACTC
AGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACTGAAACAGCCG
CAATATGCGCCGCTTCCAATTGAAAAACAAATTCTAGTCATTTATGCAGC
TGTTAATGGGTTCTGTGATCGAATGCCACTAGAAAAAATTGCACAATATG
AGAAAGCCATTCTAAGTAGTATAACCCCGGATTTACTACAAGCACTTTTA
GGGGGGTTAACTAACGAAAGAAAGATGGAATTAGAACCTTTCTTAAAACA
AAGCGCTTTGCCTTACCTATGATGTAAGGCAAGGTCGCCCGCGACTGACA
AACTAAATCTCCTTTTCTTCTGAAGTCCCCTAATTATGGTATGGATCCTG
TCTCCAGTACCAATACCAATCCACAACTCATGCTTCTCTGAATACTCAGC
TATTCTTAGAAAACATTCCCTCATCTTCCTGTCACAAATTGCAGGTCTTT
ATTACACTACAACCCGTCCCCATTTGTTATCCCTAATCCTATACCCAATC
TGCTACCCAAACAACACAACCACAACTAAACAGCAGCGCCCCACCTGACG
CTACCTTCTAACCTGCCCAGGCCTTCTCATCTCTCTCCCACCCTCCCCTC
CCCGTCATCACGCTCACCTTATTCAAACTCATGACTCTCTACTTGCACAG
CAAACAGGTAACAGCCCATCCGCCTGACACAATCACTATCTTCACTACTA
CAAGCCTTCCCTCTACCACAGGACGCGCATGGACTCCTTCTATCATACAC
TACCAAACTACAACCTAAGCAACCTCTATATGAGTCAACAGAGAAAAAAA
CGACAACTTGCTACCAAACATCACGTGAGATTTAATAAAACGCCTCCCCA
CCAACAACACAAAATTCTACGTAATACACTAACTCCAGAGACTGCTCTGT
CTTTAATGCAAGACCCCTCCCTGACCCTATCTCCGTAAACTTTCCTCTCC
CCTCCACCCGCACGACGTACCTCCTACCCCCCACTCTCACTCACCCATTT
AATTTCTCTACACTCCAGCCCCCACGACAGGCGATCAATCTGAATCTGCA
CTAAATAAAGACTTACCCTCTTCGTCCCAAACATGTCCCGACCGTCTTCC
GTTGTACCCGCGCCACACCATTCTTATTTCTACCTTTAACTATTTAACTT
CACTACGCTTTGTA
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