DY260335

Overview
NameDY260335
Unique NameDY260335
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1264
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_XANP2 (ATP synthase subunit alpha OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=atpA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.387e-27
Identity = 58/102 (56.86%), Postives = 83/102 (81.37%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSIT---PDLLQAL 297
            AMK+V G +K ELAQYRE+AAFAQFGSDLDA+TQ LLNRGARLTE+LKQ Q++PL +E+Q+ VI+A  NG+ D +P+ K+ ++E+ +L ++    P++L+A+
Sbjct:  382 AMKQVAGKIKGELAQYRELAAFAQFGSDLDASTQKLLNRGARLTELLKQSQFSPLKVEEQVAVIFAGTNGYLDPLPVSKVREFEQGLLLALRSQHPEILEAI 483          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_RHOPA (ATP synthase subunit alpha OS=Rhodopseudomonas palustris GN=atpA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.387e-27
Identity = 58/89 (65.17%), Postives = 74/89 (83.15%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILS 267
            AMKKV G +K ELAQYRE+AAFAQFGSDLDAATQ LLNRG+RLTE+LKQPQ++PL +E+Q+ VI+A  NG+ D +PL K+  +E  +L+
Sbjct:  383 AMKKVAGKIKGELAQYREMAAFAQFGSDLDAATQRLLNRGSRLTELLKQPQFSPLKMEEQVCVIWAGTNGYLDALPLNKVRAFEDGLLA 471          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_BARBK (ATP synthase subunit alpha OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=atpA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.387e-27
Identity = 59/109 (54.13%), Postives = 86/109 (78.90%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKM 327
            AMK+V GS+K ELAQYRE+AAFAQFGSDLDA+TQ LLNRGARLTE+LKQPQ++PL  E+Q++ I+A VNG+ D + +  + ++E+ +L+ +  D  Q LL  + +++++
Sbjct:  384 AMKQVAGSIKGELAQYREMAAFAQFGSDLDASTQRLLNRGARLTELLKQPQFSPLKTEEQVVTIFAGVNGYLDALAVSDVGRFERGLLALLRSD-HQELLNAIASQKQI 491          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_NITWN (ATP synthase subunit alpha OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=atpA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 7.036e-27
Identity = 58/89 (65.17%), Postives = 75/89 (84.27%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILS 267
            AMKKV G +K ELAQYRE+AAFAQFGSDLDA+TQ LLNRG+RLTE+LKQPQ++PL +E+Q++VI+A  NG+ D +PL K+  +E  +LS
Sbjct:  383 AMKKVAGKIKGELAQYREMAAFAQFGSDLDASTQRLLNRGSRLTELLKQPQFSPLKMEEQVVVIWAGTNGYLDPLPLGKVRAFEDGLLS 471          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_METSB (ATP synthase subunit alpha OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=atpA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 9.189e-27
Identity = 60/102 (58.82%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITP---DLLQAL 297
            AMKKV G +K ELAQYRE+AAFAQFGSDLDA TQ LL RG+RLTE+LKQPQ+APL +E+Q++VIYA VNG+ D +P+ ++  +E  +L+ +     DLL+ +
Sbjct:  382 AMKKVAGKIKGELAQYREMAAFAQFGSDLDATTQRLLARGSRLTELLKQPQFAPLKMEEQVVVIYAGVNGYLDALPVARVRAFEDGLLALVRTSHGDLLETI 483          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_DROME (ATP synthase subunit alpha, mitochondrial OS=Drosophila melanogaster GN=blw PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 9.189e-27
Identity = 66/106 (62.26%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNE 318
            AMK+V GS+KLELAQYREVAAFAQFGSDLDAATQ LLNRG RLTE+LKQ QY P+ IE Q+ VIY  V G  D+M   KI ++EK  L  I     QALL  +  +
Sbjct:  424 AMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEDQVAVIYCGVRGHLDKMDPAKITKFEKEFLQHIKTS-EQALLDTIAKD 528          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_AZOC5 (ATP synthase subunit alpha OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=atpA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 9.189e-27
Identity = 57/88 (64.77%), Postives = 73/88 (82.95%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAIL 264
            AMK+V G +K ELAQYRE+AAFAQFGSDLDA+TQ LLNRGARLTE+LKQ Q++PL +E+Q++VIYA  NG+ D +PL K+ ++E   L
Sbjct:  383 AMKQVAGKIKGELAQYRELAAFAQFGSDLDASTQKLLNRGARLTELLKQSQFSPLKVEEQVVVIYAGTNGYLDNLPLNKVREFEAGFL 470          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_RHOSK (ATP synthase subunit alpha OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=atpA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.200e-26
Identity = 60/112 (53.57%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKMELE 336
            AMK V G +KLELAQYRE+AAFAQFGSDLDAATQ LLNRGARLTE++KQPQYAPL   + + VI+A   G+ D++P++ + ++E+ +L  +  +    L     N+RK++ E
Sbjct:  384 AMKSVAGPVKLELAQYREMAAFAQFGSDLDAATQQLLNRGARLTELMKQPQYAPLTNAEIVCVIFAGTKGYLDKVPVKDVGRWEQGLLKHLRTNAKDLLADITNNDRKVKGE 495          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_RHOS5 (ATP synthase subunit alpha OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=atpA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.200e-26
Identity = 60/112 (53.57%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKMELE 336
            AMK V G +KLELAQYRE+AAFAQFGSDLDAATQ LLNRGARLTE++KQPQYAPL   + + VI+A   G+ D++P++ + ++E+ +L  +  +    L     N+RK++ E
Sbjct:  384 AMKSVAGPVKLELAQYREMAAFAQFGSDLDAATQQLLNRGARLTELMKQPQYAPLTNAEIVCVIFAGTKGYLDKVPVKDVGRWEQGLLKHLRTNARDLLADITNNDRKVKGE 495          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_RHOS4 (ATP synthase subunit alpha OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=atpA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.200e-26
Identity = 60/112 (53.57%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKMELE 336
            AMK V G +KLELAQYRE+AAFAQFGSDLDAATQ LLNRGARLTE++KQPQYAPL   + + VI+A   G+ D++P++ + ++E+ +L  +  +    L     N+RK++ E
Sbjct:  384 AMKSVAGPVKLELAQYREMAAFAQFGSDLDAATQQLLNRGARLTELMKQPQYAPLTNAEIVCVIFAGTKGYLDKVPVKDVGRWEQGLLKHLRTNAKDLLADITNNDRKVKGE 495          
The following BLAST results are available for this feature:
BLAST of DY260335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_XANP25.387e-2756.86ATP synthase subunit alpha OS=Xanthobacter autotro... [more]
ATPA_RHOPA5.387e-2765.17ATP synthase subunit alpha OS=Rhodopseudomonas pal... [more]
ATPA_BARBK5.387e-2754.13ATP synthase subunit alpha OS=Bartonella bacillifo... [more]
ATPA_NITWN7.036e-2765.17ATP synthase subunit alpha OS=Nitrobacter winograd... [more]
ATPA_METSB9.189e-2758.82ATP synthase subunit alpha OS=Methylocella silvest... [more]
ATPA_DROME9.189e-2762.26ATP synthase subunit alpha, mitochondrial OS=Droso... [more]
ATPA_AZOC59.189e-2764.77ATP synthase subunit alpha OS=Azorhizobium caulino... [more]
ATPA_RHOSK1.200e-2653.57ATP synthase subunit alpha OS=Rhodobacter sphaeroi... [more]
ATPA_RHOS51.200e-2653.57ATP synthase subunit alpha OS=Rhodobacter sphaeroi... [more]
ATPA_RHOS41.200e-2653.57ATP synthase subunit alpha OS=Rhodobacter sphaeroi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YC23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260335 ID=DY260335; Name=DY260335; organism=Citrus clementina; type=EST; length=1264bp
GCTATGAAAAAAGTTTGCGGTAGTTTAAAACTGGAGTTGGCACAATATCG
CGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCTGCGACTC
AGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACTGAAACAGCCG
CAATATGCGCCGCTTCCAATTGAAAAACAAATTCTAGTCATTTATGCAGC
TGTTAATGGGTTCTGTGATCGAATGCCACTAGAAAAAATTGCACAATATG
AGAAAGCCATTCTAAGTAGTATAACCCCGGATTTACTACAAGCACTTTTA
GGGGGGTTAACTAACGAAAGAAAGATGGAATTAGAACCTTTCTTAAAACA
AAGCGCTTTGCCTTACCTATGATGTAAGGCAAGGTCGCCCGCGACTGACA
AACTAAATCTCCTTTTCTTCTGAAGTCCCCTAATTATGGTATGGATCCTG
TCTCCAGTACCAATACCAATCCACAACTCATGCTTCTCTGAATACTCAGC
TATTCTTAGAAAACATTCCCTCATCTTCCTGTCACAAATTGCAGGTCTTT
ATTACACTACAACCCGTCCCCATTTGTTATCCCTAATCCTATACCCAATC
TGCTACCCAAACAACACAACCACAACTAAACAGCAGCGCCCCACCTGACG
CTACCTTCTAACCTGCCCAGGCCTTCTCATCTCTCTCCCACCCTCCCCTC
CCCGTCATCACGCTCACCTTATTCAAACTCATGACTCTCTACTTGCACAG
CAAACAGGTAACAGCCCATCCGCCTGACACAATCACTATCTTCACTACTA
CAAGCCTTCCCTCTACCACAGGACGCGCATGGACTCCTTCTATCATACAC
TACCAAACTACAACCTAAGCAACCTCTATATGAGTCAACAGAGAAAAAAA
CGACAACTTGCTACCAAACATCACGTGAGATTTAATAAAACGCCTCCCCA
CCAACAACACAAAATTCTACGTAATACACTAACTCCAGAGACTGCTCTGT
CTTTAATGCAAGACCCCTCCCTGACCCTATCTCCGTAAACTTTCCTCTCC
CCTCCACCCGCACGACGTACCTCCTACCCCCCACTCTCACTCACCCATTT
AATTTCTCTACACTCCAGCCCCCACGACAGGCGATCAATCTGAATCTGCA
CTAAATAAAGACTTACCCTCTTCGTCCCAAACATGTCCCGACCGTCTTCC
GTTGTACCCGCGCCACACCATTCTTATTTCTACCTTTAACTATTTAACTT
CACTACGCTTTGTA
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