DY260335

Overview
NameDY260335
Unique NameDY260335
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1264
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3344 contig Ccv1_Contig3344:555..1818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_MOOTA (ATP synthase subunit alpha OS=Moorella thermoacetica (strain ATCC 39073) GN=atpA PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.200e-26
Identity = 62/120 (51.67%), Postives = 90/120 (75.00%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKME--LEPFLKQS 354
            AMK+V G L+L+LAQYRE+AAFAQFGSDLD ATQA L RG R+ E+LKQ QY P+P+E+Q++V+YAAVNGF D +P+ ++  +EK  L  +  +  + +L G+  +R+++  L+  LK+S
Sbjct:  375 AMKQVAGRLRLDLAQYRELAAFAQFGSDLDKATQARLARGERMMEILKQDQYQPMPVEEQVVVLYAAVNGFLDDLPVARVRAFEKDFLRFLRNERPE-VLAGIREKRQLDDNLQEQLKKS 493          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_MARMM (ATP synthase subunit alpha OS=Maricaulis maris (strain MCS10) GN=atpA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.200e-26
Identity = 61/109 (55.96%), Postives = 81/109 (74.31%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKM 327
            AMK+V G +K ELAQYRE+AAFAQFGSDLDAATQ LLNRG RLTE+LKQPQ++PL +E+Q+ VIYA   G+ D++P   + +YE  +L  +  +   ALL  +  E+K+
Sbjct:  383 AMKQVAGKMKGELAQYREMAAFAQFGSDLDAATQKLLNRGQRLTELLKQPQFSPLSMEEQVCVIYAGTRGYLDKLPTSDVQRYEADLLRHLHGE-HAALLASIRTEKKL 490          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_DESAA (ATP synthase subunit alpha OS=Desulfatibacillum alkenivorans (strain AK-01) GN=atpA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.200e-26
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKM--ELEPFLKQSALPY 366
            AMK+V G+L+++LAQ+RE+ AFA FGSDLDAATQ  L RG RL ++LKQPQYAPLP+EKQ+ +++A  NGF D  P + +A+YE  + S +      A +G +  ERK+  E +  LK++   Y
Sbjct:  374 AMKQVAGTLRMDLAQFRELEAFAAFGSDLDAATQKQLKRGERLVQILKQPQYAPLPLEKQVAILFAGANGFLDAFPADSMAKYEAGMYSFLESKYPDA-MGAIAKERKISDETDALLKKALEEY 496          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA1_RHOS1 (ATP synthase subunit alpha 1 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=atpA1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.200e-26
Identity = 60/112 (53.57%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKMELE 336
            AMK V G +KLELAQYRE+AAFAQFGSDLDAATQ LLNRGARLTE++KQPQYAPL   + + VI+A   G+ D++P++ + ++E+ +L  +  +    L     N+RK++ E
Sbjct:  384 AMKSVAGPVKLELAQYREMAAFAQFGSDLDAATQQLLNRGARLTELMKQPQYAPLTNAEIVCVIFAGTKGYLDKVPVKDVGRWEQGLLKHLRTNAKDLLADITNNDRKVKGE 495          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_RHORU (ATP synthase subunit alpha OS=Rhodospirillum rubrum GN=atpA PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.674e-26
Identity = 64/120 (53.33%), Postives = 87/120 (72.50%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSIT---PDLLQALLGG--LTNERKMELEPFL 345
            AMK+V GS+KLELAQYRE+AAFAQF SDLD ATQ LL RGARLTE+LKQ QY+PL +E+Q+ VIYA   G+ D++    + +YE ++L ++     DLL+++  G  L+ E + +L  FL
Sbjct:  383 AMKQVAGSIKLELAQYREMAAFAQFASDLDPATQKLLARGARLTELLKQAQYSPLAVEEQVCVIYAGTRGYLDKLKTTDVVRYEASLLGALRTSGADLLESIRTGKALSKEIEQKLVKFL 502          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_RHORT (ATP synthase subunit alpha OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=atpA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.674e-26
Identity = 64/120 (53.33%), Postives = 87/120 (72.50%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSIT---PDLLQALLGG--LTNERKMELEPFL 345
            AMK+V GS+KLELAQYRE+AAFAQF SDLD ATQ LL RGARLTE+LKQ QY+PL +E+Q+ VIYA   G+ D++    + +YE ++L ++     DLL+++  G  L+ E + +L  FL
Sbjct:  383 AMKQVAGSIKLELAQYREMAAFAQFASDLDPATQKLLARGARLTELLKQAQYSPLAVEEQVCVIYAGTRGYLDKLKTTDVVRYEASLLGALRTSGADLLESIRTGKALSKEIEQKLVKFL 502          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_CAEEL (ATP synthase subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=H28O16.1 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.492e-26
Identity = 64/106 (60.38%), Postives = 79/106 (74.53%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNE 318
            AMK+V GS+KLELAQYREVAAFAQFGSDLDA+TQ LLNRG RLTE+LKQ QY P+ IE+Q+ VIYA V G+ D++    I ++EK  L+ +     QALL  +  E
Sbjct:  410 AMKQVAGSMKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMGIEEQVGVIYAGVKGYLDKVDPSAITKFEKEFLAHLRSS-QQALLKTIREE 514          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_RHOCA (ATP synthase subunit alpha OS=Rhodobacter capsulatus GN=atpA PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 4.560e-26
Identity = 60/102 (58.82%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILS---SITPDLLQAL 297
            +MK V G +KLELAQYRE+AAFAQFGSDLDAATQ LLNRGARLTE++KQPQY+PL   + + VI+A  NGF D +P++++ ++EK +L+   S   D+L+ L
Sbjct:  381 SMKSVAGPVKLELAQYREMAAFAQFGSDLDAATQKLLNRGARLTELMKQPQYSPLTNAEIVAVIFAGTNGFLDAVPVKEVGRFEKGLLAYLRSTRKDVLEWL 482          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_PARDP (ATP synthase subunit alpha OS=Paracoccus denitrificans (strain Pd 1222) GN=atpA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 4.560e-26
Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKM--ELEPFLK 348
            AMK V G +KLELAQYRE+AAFAQFGSDLDAATQ LLNRGARLTE++KQPQY+PL   + ++VIYA   G+ D +P+  + ++E  +L  +       L     N+RK+  ELE  +K
Sbjct:  383 AMKSVAGPVKLELAQYREMAAFAQFGSDLDAATQKLLNRGARLTELMKQPQYSPLTNAEIVIVIYAGTKGYLDGIPVRDVTKWEHGLLQYLRNQKADLLEDMTKNDRKVAGELEDAIK 500          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_CARHZ (ATP synthase subunit alpha OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=atpA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 5.956e-26
Identity = 64/128 (50.00%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQ---------ALLGGLTNERKMELEPFLKQSA 357
            AMK+V GSL+L+LAQYRE+AAFAQFGSDLD AT A L RG RL E+LKQ QY P+P+E+Q++ I+AAVNG+ D +P+EK+  +E   L  +  +  Q          L   LT+  K  +E F K  A
Sbjct:  374 AMKQVAGSLRLDLAQYRELAAFAQFGSDLDKATLARLTRGERLVELLKQDQYKPMPVEEQVMAIFAAVNGYLDDLPVEKVRPFEAEFLKFMRANYPQIGEEIRTKGVLTDELTSRLKSAIEEFKKTFA 501          
The following BLAST results are available for this feature:
BLAST of DY260335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_MOOTA1.200e-2651.67ATP synthase subunit alpha OS=Moorella thermoaceti... [more]
ATPA_MARMM1.200e-2655.96ATP synthase subunit alpha OS=Maricaulis maris (st... [more]
ATPA_DESAA1.200e-2649.19ATP synthase subunit alpha OS=Desulfatibacillum al... [more]
ATPA1_RHOS11.200e-2653.57ATP synthase subunit alpha 1 OS=Rhodobacter sphaer... [more]
ATPA_RHORU2.674e-2653.33ATP synthase subunit alpha OS=Rhodospirillum rubru... [more]
ATPA_RHORT2.674e-2653.33ATP synthase subunit alpha OS=Rhodospirillum rubru... [more]
ATPA_CAEEL3.492e-2660.38ATP synthase subunit alpha, mitochondrial OS=Caeno... [more]
ATPA_RHOCA4.560e-2658.82ATP synthase subunit alpha OS=Rhodobacter capsulat... [more]
ATPA_PARDP4.560e-2653.39ATP synthase subunit alpha OS=Paracoccus denitrifi... [more]
ATPA_CARHZ5.956e-2650.00ATP synthase subunit alpha OS=Carboxydothermus hyd... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YC23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260335 ID=DY260335; Name=DY260335; organism=Citrus clementina; type=EST; length=1264bp
GCTATGAAAAAAGTTTGCGGTAGTTTAAAACTGGAGTTGGCACAATATCG
CGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCTGCGACTC
AGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACTGAAACAGCCG
CAATATGCGCCGCTTCCAATTGAAAAACAAATTCTAGTCATTTATGCAGC
TGTTAATGGGTTCTGTGATCGAATGCCACTAGAAAAAATTGCACAATATG
AGAAAGCCATTCTAAGTAGTATAACCCCGGATTTACTACAAGCACTTTTA
GGGGGGTTAACTAACGAAAGAAAGATGGAATTAGAACCTTTCTTAAAACA
AAGCGCTTTGCCTTACCTATGATGTAAGGCAAGGTCGCCCGCGACTGACA
AACTAAATCTCCTTTTCTTCTGAAGTCCCCTAATTATGGTATGGATCCTG
TCTCCAGTACCAATACCAATCCACAACTCATGCTTCTCTGAATACTCAGC
TATTCTTAGAAAACATTCCCTCATCTTCCTGTCACAAATTGCAGGTCTTT
ATTACACTACAACCCGTCCCCATTTGTTATCCCTAATCCTATACCCAATC
TGCTACCCAAACAACACAACCACAACTAAACAGCAGCGCCCCACCTGACG
CTACCTTCTAACCTGCCCAGGCCTTCTCATCTCTCTCCCACCCTCCCCTC
CCCGTCATCACGCTCACCTTATTCAAACTCATGACTCTCTACTTGCACAG
CAAACAGGTAACAGCCCATCCGCCTGACACAATCACTATCTTCACTACTA
CAAGCCTTCCCTCTACCACAGGACGCGCATGGACTCCTTCTATCATACAC
TACCAAACTACAACCTAAGCAACCTCTATATGAGTCAACAGAGAAAAAAA
CGACAACTTGCTACCAAACATCACGTGAGATTTAATAAAACGCCTCCCCA
CCAACAACACAAAATTCTACGTAATACACTAACTCCAGAGACTGCTCTGT
CTTTAATGCAAGACCCCTCCCTGACCCTATCTCCGTAAACTTTCCTCTCC
CCTCCACCCGCACGACGTACCTCCTACCCCCCACTCTCACTCACCCATTT
AATTTCTCTACACTCCAGCCCCCACGACAGGCGATCAATCTGAATCTGCA
CTAAATAAAGACTTACCCTCTTCGTCCCAAACATGTCCCGACCGTCTTCC
GTTGTACCCGCGCCACACCATTCTTATTTCTACCTTTAACTATTTAACTT
CACTACGCTTTGTA
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