DY260336

Overview
NameDY260336
Unique NameDY260336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1049
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260336_ssr47 microsatellite DY260336_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
DY260336_ssr95 microsatellite DY260336_ssr95:95..109. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260336 vs. ExPASy Swiss-Prot
Match: NFYC_PONAB (Nuclear transcription factor Y subunit gamma OS=Pongo abelii GN=NFYC PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 6.007e-34
Identity = 82/162 (50.62%), Postives = 101/162 (62.35%), Query Frame = 2
Query:  119 FWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQP-----------------TGTAGPGGMMIGRP 544
            FW    +EI      DF+  +LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K            T A  V YY+    QP                 T T  PG ++I +P
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEDVRQSVTPAEPVQYYFTLAQQPAAVQVQGQQQGQQTTSSTTTIQPGQIIIAQP 183          
BLAST of DY260336 vs. ExPASy Swiss-Prot
Match: NFYC_DICDI (Nuclear transcription factor Y subunit gamma OS=Dictyostelium discoideum GN=nfyc-1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.748e-33
Identity = 66/101 (65.35%), Postives = 84/101 (83.17%), Query Frame = 2
Query:  119 FWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK 421
            FWS Q ++I +  DFK H+LPLARIKKIMK+D+DV  IS+EAPILFAKACE+ ILE+T RSW+H E NKRRTLQ+ DI  +++R + FDFL+D++PRDEIK
Sbjct:  252 FWSSQLRDIHKTEDFKTHELPLARIKKIMKSDKDVNKISSEAPILFAKACEILILEMTHRSWVHTEMNKRRTLQRTDIINSLSRCETFDFLIDMLPRDEIK 352          
BLAST of DY260336 vs. ExPASy Swiss-Prot
Match: NFYC8_ARATH (Nuclear transcription factor Y subunit C-8 OS=Arabidopsis thaliana GN=NFYC8 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 7.343e-32
Identity = 79/163 (48.47%), Postives = 104/163 (63.80%), Query Frame = 2
Query:  119 FWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVY-VQPPSQAWQSVW 604
            FWS   +E+E   DFKNH LP+ RIKKIMK D DV MI++EAPIL +KACE+FI++LT+RSWLHA+E+KR TLQK+++ AA+ +T IFDFL+D     E+K E+          A+  P   PP+        P GM+IG P     G++  QP  QAW   W
Sbjct:   21 FWS---KEMEGNLDFKNHDLPITRIKKIMKYDPDVTMIASEAPILLSKACEMFIMDLTMRSWLHAQESKRVTLQKSNVDAAVAQTVIFDFLLD--DDIEVKRES--------VAAAADPVAMPPIDD---GELPPGMVIGTPVCCSLGIHQPQPQMQAWPGAW 167          
BLAST of DY260336 vs. ExPASy Swiss-Prot
Match: HAP5_YEAST (Transcriptional activator HAP5 OS=Saccharomyces cerevisiae GN=HAP5 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.060e-30
Identity = 65/105 (61.90%), Postives = 80/105 (76.19%), Query Frame = 2
Query:  119 FWSYQRQEIEQAN--------DFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR 409
            +W     EIE  N        DFK+H LP ARI+K+MK DEDV+MISAEAPI+FAKACE+FI ELT+R+W  AE NKRRTLQK DIA A+ ++D+FDFL+D+VPR
Sbjct:  133 YWQELINEIESTNEPGSEHQDDFKSHSLPFARIRKVMKTDEDVKMISAEAPIIFAKACEIFITELTMRAWCVAERNKRRTLQKADIAEALQKSDMFDFLIDVVPR 237          
BLAST of DY260336 vs. ExPASy Swiss-Prot
Match: NFYC7_ARATH (Nuclear transcription factor Y subunit C-7 OS=Arabidopsis thaliana GN=NFYC7 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.585e-26
Identity = 70/168 (41.67%), Postives = 96/168 (57.14%), Query Frame = 2
Query:  125 SYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQ------KNDIAAAITRTDIFDFLVDIVPRDE--IKDEAAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPS-QAWQSV 601
            +Y   ++  A D K+H  PL RIKKIMK++ +V M++AEAP+L +KACE+ IL+LT+RSWLH  E  R+TL+      ++DI+AA TR+  F FL D+VPRD   + D+                    P+  P G   P G +IG P  D  GVY  PP  Q W +V
Sbjct:   47 NYWIAQMGNATDVKHHAFPLTRIKKIMKSNPEVNMVTAEAPVLISKACEMLILDLTMRSWLHTVEGGRQTLKRSDTLTRSDISAATTRSFKFTFLGDVVPRDPSVVTDD--------------------PVLHPDGEVLPPGTVIGYPVFDCNGVYASPPQMQEWPAV 194          
BLAST of DY260336 vs. ExPASy Swiss-Prot
Match: HAP5_SCHPO (Transcriptional activator hap5 OS=Schizosaccharomyces pombe GN=hap5 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.703e-26
Identity = 72/162 (44.44%), Postives = 101/162 (62.35%), Query Frame = 2
Query:  164 KNHQLPLARIKKIMKADEDVR--MISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEA------------AGLGGMVG----ATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQ 595
            K   LPLARIKK+MK D+DV+  MISAEAP LFAK  E+FI ELT+R+WLHA++N+RRTLQ++DIA A+++++++DFL+DI+ +D     A            A +GGM G     T +G+P    PM  PTG+  P      + +  P+  Y   PS+  Q
Sbjct:  105 KTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEIFIAELTMRAWLHAKKNQRRTLQRSDIANAVSKSEMYDFLIDIISKDNNNSRASSSQAHMSATQVAAMGGMNGLQPFPTQAGLPNQGFPM--PTGSQLP---FSNQQSSQPSMQYSSHPSRMQQ 261          
BLAST of DY260336 vs. ExPASy Swiss-Prot
Match: NFYC5_ARATH (Nuclear transcription factor Y subunit C-5 OS=Arabidopsis thaliana GN=NFYC5 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.864e-26
Identity = 69/162 (42.59%), Postives = 97/162 (59.88%), Query Frame = 2
Query:  119 FWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGATASGVPYYYPPMGQP--TGTAGPGGMMIGRPAVDPTGVYVQPPSQ--AW 592
            FWS   + +E   + KNH+ P++RIK+IMK D DV MI+AEAP L +KACE+F+++LT+RSWLHA+E+ R T++K+D+ A +++T IFDFL D VP+DE        G  V A A  V      +  P       P G +IG P     G++   P    AW
Sbjct:   21 FWS---KGMEGDLNVKNHEFPISRIKRIMKFDPDVSMIAAEAPNLLSKACEMFVMDLTMRSWLHAQESNRLTIRKSDVDAVVSQTVIFDFLRDDVPKDE--------GEPVVAAADPVDDVADHVAVPDLNNEELPPGTVIGTPVCYGLGIHAPHPQMPGAW 171          
BLAST of DY260336 vs. ExPASy Swiss-Prot
Match: NFYCA_ARATH (Nuclear transcription factor Y subunit C-10 OS=Arabidopsis thaliana GN=NFYC10 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.216e-18
Identity = 42/97 (43.30%), Postives = 68/97 (70.10%), Query Frame = 2
Query:  116 MFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 406
            +FW+ QR+++   N      LPL+R++KI+K+D +V+ IS + P LF+KACE FILE+T+R+W+H +   R T+++ DI  A+  +  +DFL+D VP
Sbjct:   50 VFWNNQREQL--GNFAGQTHLPLSRVRKILKSDPEVKKISCDVPALFSKACEYFILEVTLRAWMHTQSCTRETIRRCDIFQAVKNSGTYDFLIDRVP 144          
The following BLAST results are available for this feature:
BLAST of DY260336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYC_PONAB6.007e-3450.62Nuclear transcription factor Y subunit gamma OS=Po... [more]
NFYC_DICDI1.748e-3365.35Nuclear transcription factor Y subunit gamma OS=Di... [more]
NFYC8_ARATH7.343e-3248.47Nuclear transcription factor Y subunit C-8 OS=Arab... [more]
HAP5_YEAST1.060e-3061.90Transcriptional activator HAP5 OS=Saccharomyces ce... [more]
NFYC7_ARATH1.585e-2641.67Nuclear transcription factor Y subunit C-7 OS=Arab... [more]
HAP5_SCHPO2.703e-2644.44Transcriptional activator hap5 OS=Schizosaccharomy... [more]
NFYC5_ARATH7.864e-2642.59Nuclear transcription factor Y subunit C-5 OS=Arab... [more]
NFYCA_ARATH1.216e-1843.30Nuclear transcription factor Y subunit C-10 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YD01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260336 ID=DY260336; Name=DY260336; organism=Citrus clementina; type=EST; length=1049bp
CAACCAGCAAGGCCAATCCTCCTCATACCCACCCCAGCCTCCCTCCGCTG
CTGCTGCTGCCACCGCAACGGCGCCGTTTCATCACCTAATCCAACAGCAG
CAGCAGCAGCTCCAAATGTTCTGGTCCTACCAGCGGCAAGAAATCGAACA
AGCGAACGACTTCAAGAACCACCAGCTGCCGCTCGCCCGCATCAAGAAAA
TCATGAAGGCCGACGAGGACGTTCGCATGATCTCCGCCGAGGCCCCGATT
CTGTTCGCCAAGGCCTGCGAGTTGTTCATCCTCGAGCTCACGATCCGCTC
GTGGCTCCACGCCGAGGAGAACAAGCGCAGGACTCTACAGAAGAACGACA
TCGCGGCCGCCATCACCAGGACCGACATCTTCGACTTCTTGGTCGATATT
GTGCCTAGGGATGAGATTAAGGACGAGGCTGCCGGCTTGGGCGGCATGGT
GGGGGCCACTGCCAGTGGGGTTCCGTATTATTATCCTCCAATGGGGCAGC
CCACTGGGACTGCTGGCCCCGGTGGGATGATGATTGGCCGGCCGGCTGTC
GATCCTACTGGTGTTTACGTGCAGCCGCCTAGTCAGGCTTGGCAGTCCGT
TTGGCAGACCCCCGCGGGGACTGGGGACGACGGCTCTTATGGCAGTGGTG
GGAGCGGGGGGACCGGCCATCCTGATGGTCCAGGCTAGGTTAAACAAAAC
CACCAATAATGAGATGTTATGCCGCTGGGTGAATCCATAAAAAAGGCATT
GGAAACCCCTGCCGAGGCTACATGAATTTTGCCTGGCCTCTGAATAATAA
CAACCCTTGTCTCGAATGTTAAAAAAAACCTTCTCTACTGTGATAGACTT
TAACGGAACCCCTTTGGACCTTTTCCTCTTACTTTCTGTCCCACACAACA
CGGACCTCGCCAGAACTCGCCTAATTATACCCAATGTCGCCTCTTTGTGA
CTCTGCAAACAAAAAAAAAAACAAACCCCCTCTTTCTCACTCATCTTTGG
CATTTACAAAAACGCATCCTTATTCACTTTTCCTGCCCACACACTCTAC
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