DY260341

Overview
NameDY260341
Unique NameDY260341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1218
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260341 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 3.194e-69
Identity = 137/211 (64.93%), Postives = 168/211 (79.62%), Query Frame = 1
Query:   91 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFTELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLPHSNQLLRAKIAENERGQQNLNLMPGGSSHKIIHSQPFDSPSYFPVQCITA 723
            MGRGKIEIKRIEN+TNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFS+RGRLYEY+NN+++STI+RYKKA +D++NT ++ E NA +YQQE+AKLR QI  +QNSNRN++G+SLS L+  ELK +E RLEK ISRIRSKK+ELL  EIE  QKRE++L + N  LR K+AE ER QQ+ + M  GS    I  +   S +YF    +TA
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQHHHQMVSGSEINAI--EALASRNYFAHSIMTA 209          
BLAST of DY260341 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 3.654e-65
Identity = 124/182 (68.13%), Postives = 155/182 (85.16%), Query Frame = 1
Query:   91 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSN-NSVKSTIDRYKKATADTSNTGSICEANA-QFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFTELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLPHSNQLLRAKIAENERGQQN 630
            MGRGKIEIKRIEN T+RQVTFCKRRNGLLKKAYEL++LCDAE++LIVFSSRGRLYE+SN NS +STI+RYKKA+A TS +  + + N+ Q++QQEAAK+R QI  +QN+NR+++GES+  +   ELK++E RLEKGISRIRSKK+ELLF+EIEYMQKRE DL + N  LRAK+AE ER + +
Sbjct:    1 MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAEAERAEHD 182          
BLAST of DY260341 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 8.424e-62
Identity = 125/186 (67.20%), Postives = 157/186 (84.41%), Query Frame = 1
Query:   91 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYS-NNSVKSTIDRYKKATADTSNTGS-ICEANA-QFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFTELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLPHSNQLLRAKIAENERGQQNLNL 639
            MGRG+IEIKRIENTT+RQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEYS NN+VK+TIDRYKKA A  S +G+ + E NA Q+YQQE+AKLR QI  +QN+N++++G+++S L+  ELK +E+RLEKGIS+IR++KNELL +EI YM KRE++L + N  LR KIAE E+  Q + +
Sbjct:    1 MGRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKREIELQNDNMDLRTKIAEEEQQLQQVTV 186          
BLAST of DY260341 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 9.064e-40
Identity = 85/172 (49.42%), Postives = 122/172 (70.93%), Query Frame = 1
Query:   91 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFTELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLPHSNQLLRAKIA 606
            MGRGKI I+RI+N+T+RQVTF KRRNG+ KKA EL++LCDAEV L++FSS GRLYEYS+ S+KS IDRY K + D     +   +  +F+Q+EAA LR Q+ N+Q ++R ++GE LSGLN  EL+++E +LE  +  +R+KK+ +L  EI  + ++   +   N  L  KI+
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRYGK-SKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKIS 171          
BLAST of DY260341 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 2.637e-39
Identity = 89/186 (47.85%), Postives = 129/186 (69.35%), Query Frame = 1
Query:   91 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTG-SICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFTELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLPHSNQLLRAKIAE----NERGQQN 630
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV+LI+FS+RG+LYE+ S++S+  T++RY+K       T  S  EA     QQE  KL+ +   +Q S RN+LGE L  LN  EL+++E +L+  + +IRS + +L+  +++ +Q++E  L  +N+ L+ ++ E    N + QQN
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLMEGSTLNLQWQQN 186          
BLAST of DY260341 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 7.673e-39
Identity = 89/183 (48.63%), Postives = 122/183 (66.67%), Query Frame = 1
Query:   91 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFTELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLPHSNQLLRAKIAENERGQQNLNL 639
            MGRGKI I+RI+N+T+RQVTF KRRNGLLKKA ELS+LCDAEV L+VFSS GRLYE+S+ ++K+ IDRY  A  +    G    +  + +Q+EAA LR Q+ N+Q S++ ++GE LSGL   +L+ +E RLE  +  IR +K+ LL +EIE +  +   +   N  L   +  N   QQ L L
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTNMKTVIDRYTNAKEEL--LGGNATSEIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVKGSLIHQENIELSRSL--NVMSQQKLEL 179          
BLAST of DY260341 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.002e-38
Identity = 81/175 (46.29%), Postives = 121/175 (69.14%), Query Frame = 1
Query:   91 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFTELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLPHSNQLLRAKIAENE 615
            M RGK ++KRIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEVSLI+FS +G+LYE+++++++ TIDRY + T D  +T  + E N Q  + EAA +  +I  ++ S R +LGE +   +  EL+ +E +LEK +  IR++K ++   +IE ++++E  L   N+ L  K   +E
Sbjct:    1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHE 175          
BLAST of DY260341 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.232e-38
Identity = 79/158 (50.00%), Postives = 117/158 (74.05%), Query Frame = 1
Query:   91 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFTELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREV 564
            MGRGKIEIKRI+N T+RQVTF KRR+GL KKA ELS+LCDAEV L+VFSS  RLY+++++S+KS I+RY +   D   T +   + A+ +QQEAA LR Q+ N+Q  +R +LG+ LSGL+  +L+N+E++LE  +  IR +K+ ++  +I+ + ++ V
Sbjct:    1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSSMKSIIERYNETKEDPHQTMN-ASSEAKLWQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRKVV 157          
BLAST of DY260341 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.916e-38
Identity = 84/175 (48.00%), Postives = 123/175 (70.29%), Query Frame = 1
Query:   91 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFTELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLPHSNQLLRAKIAEN 612
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV+LIVFS+RG+LYE+ S + +  T++RY++ +  +  T    +     Y QE  KL+ ++  +Q S+RN+LGE L  L+  EL+ +E +L+K + +IRS K + +  ++  +QK+E  L  SN+ L+ K+ E+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKETESSY-QEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEES 174          
BLAST of DY260341 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 6.495e-38
Identity = 81/170 (47.65%), Postives = 119/170 (70.00%), Query Frame = 1
Query:   91 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFTELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLPHSNQLLRAK 600
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV+LI+FSSRG+LYE+ +  ++STI+RY +   + S + +  E   Q + QE  KL+ +  ++  +NRN+LGE L  +   EL+ +E +LE  ++  R +K +++  E+E ++K+E  L   N+ L+ K
Sbjct:    1 MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIESTIERYNRC-YNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIK 169          
The following BLAST results are available for this feature:
BLAST of DY260341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
AGL11_ARATH3.194e-6964.93Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
MAD21_ORYSJ3.654e-6568.13MADS-box transcription factor 21 OS=Oryza sativa s... [more]
MAD13_ORYSJ8.424e-6267.20MADS-box transcription factor 13 OS=Oryza sativa s... [more]
MAD27_ORYSJ9.064e-4049.42MADS-box transcription factor 27 OS=Oryza sativa s... [more]
AGL9_PETHY2.637e-3947.85Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
MAD57_ORYSJ7.673e-3948.63MADS-box transcription factor 57 OS=Oryza sativa s... [more]
SOC1_ARATH1.002e-3846.29MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
MAD23_ORYSJ2.232e-3850.00MADS-box transcription factor 23 OS=Oryza sativa s... [more]
CMB1_DIACA2.916e-3848.00MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
AGL6_ARATH6.495e-3847.65Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YD06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260341 ID=DY260341; Name=DY260341; organism=Citrus clementina; type=EST; length=1218bp
CCTTTGGTTAGATATTAGGTGGTCAAGAAAAGAATGGCGTTTCCAAATGA
ATTAGCAGCAGGAAGAGAGGAATTATCACCAAAGAGAAAAATGGGGAGAG
GAAAGATCGAGATCAAGCGGATCGAAAACACAACAAATCGCCAAGTGACC
TTCTGCAAGAGGCGCAATGGTTTGCTCAAGAAAGCTTACGAATTATCTGT
TCTTTGTGATGCTGAGGTTTCTCTTATCGTCTTCTCCAGCCGCGGCCGCC
TTTATGAGTATTCCAACAACAGTGTGAAATCAACAATTGACAGGTACAAG
AAGGCCACTGCAGATACCTCAAATACTGGGTCTATCTGTGAAGCAAATGC
TCAGTTCTACCAGCAAGAAGCTGCCAAGCTGAGGATACAAATTAGCAATA
TGCAAAATTCAAACAGAAACATGTTGGGTGAATCACTAAGTGGGTTAAAT
TTCACGGAACTCAAGAACATGGAGACTCGTTTAGAGAAAGGTATTAGCAG
AATCCGATCTAAAAAGAATGAGCTGCTGTTTGCAGAAATTGAGTACATGC
AGAAGAGGGAAGTTGACTTGCCCCACAGCAACCAGCTTCTCCGAGCCAAG
ATAGCCGAGAATGAAAGAGGACAGCAGAACCTGAATTTGATGCCAGGAGG
GAGTAGCCACAAGATTATACATTCTCAGCCATTTGATTCCCCGAGCTATT
TCCCAGTCCAATGCATTACAGCCCCCCCCAATCTTACCCCCCCCCGGGAC
CCAATGCCCCTCCGGTTAGTTTAAAATGTTTGAAAAACAATCCGCCCCGT
CCTATCCCAGGGAGGGGTTCTAGCCTTTACTTTCTTCCCAATAACAGGGG
GTGCCGGGGGCCCCCCCCAAAATTGCTAAAAAAAAGCCCCCCAAAAAAAC
ACACCTTCGCTAATTAAATTGATCCCCCCGGGCGCCCTACCCCCCCACCT
CTACAACCCCTTTCTCACACCCTCACTAAATAAATAAAATGCTGTCTCCC
CCCCTCAGATCCCCCTTTCCCGATCGGCTAATCCACCAACAACACACTCC
TCCTTCTTCTCTCTCTACCCTCCCCGCTCAACCCCTCATAGGGCACACCA
GCAACATAAAGCATCAAAACCACCCCTCCCTCTTTGCCACCTCCCCCCTC
TCTTGCCCCGACACAAAGAAACGCCTGCCTCACCCTCACCTCAATTACTT
TCCCTACCCCCGAAGCGG
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