DY260343 | Citrus Genome Database

Overview


Name	DY260343
Unique Name	DY260343
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	1048

Libraries


Library Name	Type
Fruit-TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DY260343 vs. ExPASy Swiss-Prot
Match: CALM_STIJA (Calmodulin OS=Stichopus japonicus PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.748e-33
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 2

Query:  128 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 553
            L++++  E KEAF LFD DG GTI  KEL   MR+LG   TE ++  MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF+ MM
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 146

HSP 2 Score: 68.5514 bits (166), Expect = 7.146e-11
Identity = 31/67 (46.27%), Postives = 48/67 (71.64%), Query Frame = 2

Query:  143 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 343
            ++EI+EAF +FD DG+G I A EL   M  LG ++T+E++++MI + D DG G ++ +EF  MMT+K
Sbjct:   83 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149

[Close]

BLAST of DY260343 vs. ExPASy Swiss-Prot
Match: CALM_HETTR (Calmodulin OS=Heterocapsa triquetra PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.748e-33
Identity = 67/142 (47.18%), Postives = 96/142 (67.61%), Query Frame = 2

Query:  128 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 553
            L++++  E KEAF LFD DG GTI  KEL   MR+LG   TE ++  MI +VD DG+G ID  EF  +M  K+ + D++EEL++AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG++N +EF++MM
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDSDGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146

[Close]

BLAST of DY260343 vs. ExPASy Swiss-Prot
Match: CALM_CIOIN (Calmodulin OS=Ciona intestinalis PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 1.748e-33
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 2

Query:  128 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 553
            L++++  E KEAF LFD DG GTI  KEL   MR+LG   TE ++  MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF+ MM
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVNMM 146

HSP 2 Score: 68.9366 bits (167), Expect = 5.471e-11
Identity = 31/67 (46.27%), Postives = 48/67 (71.64%), Query Frame = 2

Query:  143 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 343
            ++EI+EAF +FD DG+G I A EL   M  LG ++T+E++++MI + D DG G ++ +EF +MMT K
Sbjct:   83 EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVNMMTNK 149

[Close]

BLAST of DY260343 vs. ExPASy Swiss-Prot
Match: CATR_GIALA (Caltractin OS=Giardia lamblia GN=CAL PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.283e-33
Identity = 66/146 (45.21%), Postives = 103/146 (70.55%), Query Frame = 2

Query:  128 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTT 565
            +S++ K EI+EAF+LFD D SG ID  EL VAMRALGF++ +E+I +++ + D+D  G I   +FE +M  KI  RD  EE++KAF + D D  G+IS  +++R+A+EL  N +D E+  M++E DRD DGE++ ++FI +++ T+
Sbjct:   28 VSEEMKHEIREAFDLFDADRSGRIDFHELKVAMRALGFDVKKEEIQRIMNEYDRDQLGEITFQDFEEVMIEKISNRDPTEEILKAFRLFDDDATGRISLKNLRRVAKELSENISDEELLAMIQEFDRDGDGEIDEEDFIAILRSTS 173

[Close]

BLAST of DY260343 vs. ExPASy Swiss-Prot
Match: CALM_STRIE (Calmodulin OS=Strongylocentrotus intermedius PE=2 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 2.283e-33
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 2

Query:  128 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 553
            L++++  E KEAF LFD DG GTI  KEL   MR+LG   TE ++  MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF+ MM
Sbjct:   12 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 153

HSP 2 Score: 68.5514 bits (166), Expect = 7.146e-11
Identity = 31/67 (46.27%), Postives = 48/67 (71.64%), Query Frame = 2

Query:  143 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 343
            ++EI+EAF +FD DG+G I A EL   M  LG ++T+E++++MI + D DG G ++ +EF  MMT+K
Sbjct:   90 EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 156

[Close]

BLAST of DY260343 vs. ExPASy Swiss-Prot
Match: CALM_PROMN (Calmodulin OS=Prorocentrum minimum PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.283e-33
Identity = 67/142 (47.18%), Postives = 96/142 (67.61%), Query Frame = 2

Query:  128 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 553
            L++++  E KEAF LFD DG GTI  KEL   MR+LG   TE ++  MI +VD DG+G ID  EF  +M  K+ + D++EEL++AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG++N +EF++MM
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146

[Close]

BLAST of DY260343 vs. ExPASy Swiss-Prot
Match: CALM_PFIPI (Calmodulin OS=Pfiesteria piscicida PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.283e-33
Identity = 67/142 (47.18%), Postives = 96/142 (67.61%), Query Frame = 2

Query:  128 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 553
            L++++  E KEAF LFD DG GTI  KEL   MR+LG   TE ++  MI +VD DG+G ID  EF  +M  K+ + D++EEL++AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG++N +EF++MM
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146

[Close]

BLAST of DY260343 vs. ExPASy Swiss-Prot
Match: CALM_MOUSC (Calmodulin OS=Mougeotia scalaris PE=2 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 2.283e-33
Identity = 69/142 (48.59%), Postives = 95/142 (66.90%), Query Frame = 2

Query:  128 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 553
            L++++  E KEAF LFD DG G+I  KEL   MR+LG   TE ++  MI +VD DG+G ID  EF ++M  K+ + DS+EEL +AF + D+D NG ISA D + +   LG   TD E+ EM+ EAD D DG+VN +EF++MM
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGSITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGYISAADWRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVKMM 146

[Close]

BLAST of DY260343 vs. ExPASy Swiss-Prot
Match: CALM_LUMRU (Calmodulin OS=Lumbricus rubellus PE=2 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 2.283e-33
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 2

Query:  128 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 553
            L++++  E KEAF LFD DG GTI  KEL   MR+LG   TE ++  MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF+ MM
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 146

[Close]

BLAST of DY260343 vs. ExPASy Swiss-Prot
Match: CALM_LOCMI (Calmodulin OS=Locusta migratoria PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 2.283e-33
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 2

Query:  128 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 553
            L++++  E KEAF LFD DG GTI  KEL   MR+LG   TE ++  MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF+ MM
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 146

HSP 2 Score: 68.5514 bits (166), Expect = 7.146e-11
Identity = 31/67 (46.27%), Postives = 48/67 (71.64%), Query Frame = 2

Query:  143 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 343
            ++EI+EAF +FD DG+G I A EL   M  LG ++T+E++++MI + D DG G ++ +EF  MMT+K
Sbjct:   83 EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149

The following BLAST results are available for this feature:

BLAST of DY260343 vs. ExPASy Swiss-Prot

BLAST of DY260343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348


Match Name	E-value	Identity	Description
CALM_STIJA	1.748e-33	48.59	Calmodulin OS=Stichopus japonicus PE=1 SV=2	[more]
CALM_HETTR	1.748e-33	47.18	Calmodulin OS=Heterocapsa triquetra PE=2 SV=1	[more]
CALM_CIOIN	1.748e-33	48.59	Calmodulin OS=Ciona intestinalis PE=2 SV=3	[more]
CATR_GIALA	2.283e-33	45.21	Caltractin OS=Giardia lamblia GN=CAL PE=3 SV=1	[more]
CALM_STRIE	2.283e-33	48.59	Calmodulin OS=Strongylocentrotus intermedius PE=2 ...	[more]
CALM_PROMN	2.283e-33	47.18	Calmodulin OS=Prorocentrum minimum PE=2 SV=1	[more]
CALM_PFIPI	2.283e-33	47.18	Calmodulin OS=Pfiesteria piscicida PE=2 SV=1	[more]
CALM_MOUSC	2.283e-33	48.59	Calmodulin OS=Mougeotia scalaris PE=2 SV=3	[more]
CALM_LUMRU	2.283e-33	48.59	Calmodulin OS=Lumbricus rubellus PE=2 SV=3	[more]
CALM_LOCMI	2.283e-33	48.59	Calmodulin OS=Locusta migratoria PE=1 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAP12YD08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY260343 ID=DY260343; Name=DY260343; organism=Citrus clementina; type=EST; length=1048bp
TTCCTTTCCTTTACTTTGCGGTCTTTTTTTGAAACGCTTTGCGATCTAAT
CGACCAGGGCAAAGGCAATGGCTAGTCTTTATAAAGGGGTTTCTAGGAAA
GATAAAATCAGAGGACGTCATCATGGGCTATCACAACAGAAGAAGCAAGA
GATTAAGGAAGCATTTGAACTTTTTGACACCGATGGCTCAGGCACTATTG
ATGCCAAAGAGCTGAATGTCGCTATGAGGGCCCTTGGTTTTGAGATGACC
GAAGAGCAAATCAATCAAATGATTGCAGATGTCGACAAGGATGGAAGTGG
TGCCATTGATTTAGATGAATTTGAACATATGATGACGGCTAAGATTGGAG
AAAGGGATTCTAAGGAAGAGCTCATGAAAGCATTCCATATCATTGACCAA
GATAACAATGGAAAGATATCAGCTGGAGATATTAAGCGTATTGCGAGGGA
GCTGGGTGTAAACTTCACTGACCGAGAGATTCATGAGATGGTAGAGGAAG
CAGACAGAGATCATGATGGAGAAGTAAACGCTGATGAGTTTATCCGTATG
ATGAAGAGGACCACATTCGGGTACTAGAGATCCATAAGGATGAAGAAGGG
TTGTTGATGCATGGTAGCTGTAGTATATACTTTGTGCCAAGTTGAAAGGA
AAATAATCATGGATTGATAAGTGATGGTTCATTGTTTTGGCTAAATTTTA
TGCCTGCAAATTTATTAATAATGTACCTGTCTTTTGTTATTTAATGATCT
GGGTAGGTCTAAGGATAAATTGGGAAATGCTCCCAGATCCTGTTAAATCA
AAAATGCCTAAGGTTCCTGCCGGATTGCCATTCCTGGACGTCCCTGAATT
CAGGAAATATTGGGCCTGATTTCCACCCAAAATTGACGGTAAAAAGGGCA
AAGCCAAAACCCCTTTCCCAAACCACCCAAAAAAAATTGGGAGGGAATCC
AAACCCCCCAACCTAAAAAAAATTTTTGGAAAAAAACCTTGTATTCCCCA
AAACGTTTTTTGGGGAAACTTGAAAACCCCAAACCCCTCTTTTCCTAT