DY260354

Overview
NameDY260354
Unique NameDY260354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length997
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.991e-19
Identity = 58/130 (44.62%), Postives = 75/130 (57.69%), Query Frame = 2
Query:  146 SRVTASDLWPNSPFAATKQLPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDEKKPK---RQRKNLYRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 523
            S V+ SD      F  + Q  + FE    S   +   KI  P    ++   + +   +  K    + K  YRG+RQRPWGK+AAEIRDP K G RVWLGTF+TA EAARAYD+ A ++RG KA +NFP E
Sbjct:   90 SEVSVSDF----DFKPSNQNQNQFEPELKSQIRKPPLKISLPAKTEWIQFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLE 215          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.102e-19
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 2
Query:  347 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTV 541
            +RG+R+RPWG++AAEIRDP K  RVWLGTF+TAEEAARAYD  AR+ RG KAK NFP   +  TV
Sbjct:   33 FRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLPGESTTV 97          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.102e-19
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 2
Query:  347 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 517
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+TAEEAARAYD  AR  RG KAK NFP
Sbjct:   25 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.102e-19
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 2
Query:  242 HQSLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 523
            H + + + + +PP    +   +    +   QR   YRG+R+RPWGK+AAEIRDP +KGVRVWLGTF+TA EAAR YDK A K+RG KA +NFP E
Sbjct:   39 HCTTSTLSQRKPPLATIAVPTTAPVVQENDQRH--YRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLE 131          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.703e-19
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 2
Query:  347 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 520
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+TAEEAA+AYD  AR+ RG KAK NFP+
Sbjct:   27 YRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPS 84          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.137e-18
Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = 2
Query:  206 PHNFESTPFSDEHQS---LAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEED 529
            P  F ST   D HQ+   + +     P +   +  A+G   K    +K LYRG+RQR WGKW AEIR P+  +RVWLGT++TAE AA AYD+ A K+RG+ A++NFPN +D
Sbjct:   92 PPLFSST--YDHHQTSELMLQAAAGSPAAAFAAALAAGRVTK----KKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKD 196          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.137e-18
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 2
Query:  347 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 517
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+TAEEAA+AYD  AR+ RG KAK NFP
Sbjct:   27 YRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.485e-18
Identity = 54/137 (39.42%), Postives = 76/137 (55.47%), Query Frame = 2
Query:  125 FFPRHGGSRVTASDLWPNSPFAATKQ----LPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 520
            +F     S V  +D W + P +        + +       S    S+  +  P   +   +  ASG      RQ+   YRG+R+RPWGK+AAEIRDP+K G RVWLGT+ T E+AA AYD+ A ++RG KAK+NFP+
Sbjct:   16 YFRNPSFSNVILNDNWSDLPLSVDDSQDMAIYNTLRDAVSSGWTPSVPPVTSPAEENKPPATKASGSHAP--RQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPH 150          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: ERF53_ARATH (Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.485e-18
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 2
Query:  344 LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 517
            LYRG+RQR WGKW AEIR PR   R+WLGTF+TAEEAA AYD+EA K+RG+ A++NFP
Sbjct:  186 LYRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFP 243          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.939e-18
Identity = 56/128 (43.75%), Postives = 76/128 (59.38%), Query Frame = 2
Query:  161 SDLWPNSPFAATKQLPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDE-------KKPKR-QRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 517
            S LW   PF    +L     S+P  D    + +I + +  S  +S + +  E       KK KR +    YRG+R+RPWGK+AAEIRDP +KG R+WLGTF +  +AARAYD  A K+RG+KA +NFP
Sbjct:   40 SGLWSLEPFNPVPKLE---PSSPVLDPDSYVQEILQMEAESSSSSSTTTSPEVETVSNRKKTKRFEETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFP 164          
The following BLAST results are available for this feature:
BLAST of DY260354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
EF102_ARATH2.991e-1944.62Ethylene-responsive transcription factor 5 OS=Arab... [more]
ERF80_ARATH5.102e-1967.69Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF78_ARATH5.102e-1975.44Ethylene-responsive transcription factor 4 OS=Arab... [more]
EF105_ARATH5.102e-1952.63Ethylene-responsive transcription factor ERF105 OS... [more]
ERF4_TOBAC8.703e-1972.41Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF61_ARATH1.137e-1846.85Ethylene-responsive transcription factor ERF061 OS... [more]
ERF4_NICSY1.137e-1873.68Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF99_ARATH1.485e-1839.42Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF53_ARATH1.485e-1870.69Ethylene-responsive transcription factor ERF053 OS... [more]
EF107_ARATH1.939e-1843.75Ethylene-responsive transcription factor ERF107 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YD20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260354 ID=DY260354; Name=DY260354; organism=Citrus clementina; type=EST; length=997bp
CGCATCTTCTTTTCTCTTACTAATCGCCAAAACCACAGCCTGACCTGATC
GCTAGTTTAGTTTCAGTGCTTTATTATTACATTTACTTGCGGAAAGAATG
TGTGGCGGTTCTATCTTAGGAGACTTCTTTCCTCGCCACGGCGGCAGCCG
CGTCACCGCTTCCGACCTCTGGCCCAACTCACCCTTCGCTGCTACTAAAC
AACTCCCTCACAACTTTGAATCTACTCCGTTCTCCGATGAACACCAGTCA
CTGGCCAAAATCAAACGCCCTCAACCCCCTTCATATCTAAACTCCTGTTC
AGCTTCAGGTGATGAGAAAAAGCCCAAGAGGCAGAGGAAGAATCTCTACA
GGGGAATAAGGCAACGCCCCTGGGGCAAATGGGCAGCTGAGATTCGTGAC
CCAAGGAAAGGAGTTCGAGTCTGGCTCGGCACATTCAACACTGCCGAAGA
AGCAGCTCGAGCCTATGACAAAGAAGCCCGCAAGATTCGCGGCAAGAAAG
CCAAAGTCAACTTCCCCAACGAAGAGGACGTCTTCACCGTCACCCCTGCT
GCTGCCGCCCATGCTTACCATCATCATCAGCATAATCATAATCCCACTCC
CAGTCCCCTTCCTTCTCTTTCCCAAGAAGATCTTTTTAGTCGTAATAACT
CATCTATAAGTAGTGTTGGGTTTGGCTTGTATGGTTATGATCTGAACCCC
CCGATTGTACTTCTGGTGGTGACGAAAATTTCCGGGACTGGTTCTGGGTC
TGTTTCCAAAGGTGGGTACCAATCCACAGAAACTATGCTGAATTGCAACC
CGAAAGTCCATGAAGGGTCGTTTGCCTCCAATGAAGGGAAAGCCCAAAAA
ACAAAAAAAAAAAAAAAACCAAAACCCTAAAAAAGAAAAAAAACAAAGTG
CCAAAAACCTTCCGAAGGAACTTATGGGCTAACAAAAAATTTCCAGGAAT
TTTCATCCCCCTTTCCCTAATCCCCATGGGGCACACCCCCCCTTTGC
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