DY260354

Overview
NameDY260354
Unique NameDY260354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length997
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: ERF58_ARATH (Ethylene-responsive transcription factor ERF058 OS=Arabidopsis thaliana GN=ERF058 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.368e-18
Identity = 52/115 (45.22%), Postives = 68/115 (59.13%), Query Frame = 2
Query:  176 NSPFAATKQLPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 520
            +S FA +   P ++ S   S  H        P+P S   + +++    K       LYRG+RQR WGKW AEIR PR   R+WLGTF+TAEEAA AYDK A K+RG  A++NFP+
Sbjct:   38 SSAFAFSLPAPISYGSDLHSFSHHL-----SPKPVSMKQTGTSAAKPTK-------LYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPD 140          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: ERF54_ARATH (Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.368e-18
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 2
Query:  344 LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 517
            LYRG+RQR WGKW AEIR PR   R+WLGTF+TAEEAA AYD++A K+RG  A +NFP
Sbjct:  142 LYRGVRQRQWGKWVAEIRKPRSRARLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFP 199          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 9.622e-18
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 2
Query:  218 ESTPFSDEH--QSLAKIKRPQPP-SYLNSCSASGDEKKPKRQ------RKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 517
            ++T  SD+    ++ ++KR     + + S  + GD K+          R+  +RG+RQRPWG+WAAEIRDP +G RVWLGT++T EEAA  YDK A K++G  A  NFP
Sbjct:   46 DATDSSDDEGRNTVRRVKRHVTEINLMPSTKSIGDRKRRSVSPDSDVTRRKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFP 154          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 9.622e-18
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 2
Query:  347 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 517
            +RG+R+RPWG++AAEIRDP K  RVWLGTF++AE+AARAYD  AR +RG KAK NFP
Sbjct:   28 FRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFP 84          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 9.622e-18
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 2
Query:  221 STPFSDEHQSL---AKIKRPQPPSYLNSCSASGDEKKP-----KRQRKNLYRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 517
            S+  SDE +S     KI+ P+  + ++S     ++  P        +   YRG+RQRPWGK+AAEIRDP K G RVWLGTF TAE+AA AYD+ A ++RG +A +NFP
Sbjct:   98 SSSSSDEDRSSFPSVKIETPESFAAVDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 205          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.257e-17
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 2
Query:  347 YRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 523
            YRG+R+RPWGK+AAEIRD RK G RVWLGTF+TAEEAARAYD+ A  +RG+ A +NFP+E
Sbjct:   15 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNFPHE 74          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.257e-17
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 2
Query:  281 SYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEED 529
            S+ +    S  +KK K + K +YRG R R WGKW +EIR+PRK  R+WLGTF TAE AARA+D  A  I+G  A +NFP   D
Sbjct:    4 SHGSDTECSSKKKKEKTKEKGVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPELAD 86          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.641e-17
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 2
Query:  347 YRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 523
            YRG+R+RPWGK+AAEIRD  R G RVWLGTFNTAE+AARAYD+ A  +RG++A +NFP+E
Sbjct:   14 YRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFPHE 73          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.641e-17
Identity = 49/106 (46.23%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  347 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTPXXXXXXXXXXXXXXNPTPSPLPSLSQEDLFSRNNSSISS 664
            +RG+RQRPWGKWAAEIRDP K VR+WLGT+NTAEEAA  YD  A ++RG  A  N       F+VTP               P PSP+    +++  S+ + + SS
Sbjct:  122 FRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTN-------FSVTPTTATEKKA-------PPPSPVKKKKKKNNKSKKSVTASS 213          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.144e-17
Identity = 45/83 (54.22%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  266 RPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 514
            +P P +  N      +  K  R     YRG+R+RPWG++AAEIRDP K  RVWLGTF+TA++AARAYD  AR  RG KAK NF
Sbjct:    9 KPDPVAPTNPTHHESNAAKEIR-----YRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNF 86          
The following BLAST results are available for this feature:
BLAST of DY260354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
ERF58_ARATH7.368e-1845.22Ethylene-responsive transcription factor ERF058 OS... [more]
ERF54_ARATH7.368e-1868.97Ethylene-responsive transcription factor ERF054 OS... [more]
PTI6_SOLLC9.622e-1844.04Pathogenesis-related genes transcriptional activat... [more]
ERF3_TOBAC9.622e-1870.18Ethylene-responsive transcription factor 3 OS=Nico... [more]
EF100_ARATH9.622e-1847.22Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF96_ARATH1.257e-1771.67Ethylene-responsive transcription factor ERF096 OS... [more]
ERF42_ARATH1.257e-1751.81Ethylene-responsive transcription factor ERF042 OS... [more]
ERF95_ARATH1.641e-1770.00Ethylene-responsive transcription factor ERF095 OS... [more]
CRF2_ARATH1.641e-1746.23Ethylene-responsive transcription factor CRF2 OS=A... [more]
ERF79_ARATH2.144e-1754.22Ethylene-responsive transcription factor 8 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YD20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260354 ID=DY260354; Name=DY260354; organism=Citrus clementina; type=EST; length=997bp
CGCATCTTCTTTTCTCTTACTAATCGCCAAAACCACAGCCTGACCTGATC
GCTAGTTTAGTTTCAGTGCTTTATTATTACATTTACTTGCGGAAAGAATG
TGTGGCGGTTCTATCTTAGGAGACTTCTTTCCTCGCCACGGCGGCAGCCG
CGTCACCGCTTCCGACCTCTGGCCCAACTCACCCTTCGCTGCTACTAAAC
AACTCCCTCACAACTTTGAATCTACTCCGTTCTCCGATGAACACCAGTCA
CTGGCCAAAATCAAACGCCCTCAACCCCCTTCATATCTAAACTCCTGTTC
AGCTTCAGGTGATGAGAAAAAGCCCAAGAGGCAGAGGAAGAATCTCTACA
GGGGAATAAGGCAACGCCCCTGGGGCAAATGGGCAGCTGAGATTCGTGAC
CCAAGGAAAGGAGTTCGAGTCTGGCTCGGCACATTCAACACTGCCGAAGA
AGCAGCTCGAGCCTATGACAAAGAAGCCCGCAAGATTCGCGGCAAGAAAG
CCAAAGTCAACTTCCCCAACGAAGAGGACGTCTTCACCGTCACCCCTGCT
GCTGCCGCCCATGCTTACCATCATCATCAGCATAATCATAATCCCACTCC
CAGTCCCCTTCCTTCTCTTTCCCAAGAAGATCTTTTTAGTCGTAATAACT
CATCTATAAGTAGTGTTGGGTTTGGCTTGTATGGTTATGATCTGAACCCC
CCGATTGTACTTCTGGTGGTGACGAAAATTTCCGGGACTGGTTCTGGGTC
TGTTTCCAAAGGTGGGTACCAATCCACAGAAACTATGCTGAATTGCAACC
CGAAAGTCCATGAAGGGTCGTTTGCCTCCAATGAAGGGAAAGCCCAAAAA
ACAAAAAAAAAAAAAAAACCAAAACCCTAAAAAAGAAAAAAAACAAAGTG
CCAAAAACCTTCCGAAGGAACTTATGGGCTAACAAAAAATTTCCAGGAAT
TTTCATCCCCCTTTCCCTAATCCCCATGGGGCACACCCCCCCTTTGC
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