DY260354

Overview
NameDY260354
Unique NameDY260354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length997
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: ESR2_ARATH (Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.470e-15
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 2
Query:  347 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 514
            YRG+R+RPWG++AAEIRDP    R WLGTF+TAEEAA AYD  AR +RG KA+ NF
Sbjct:   58 YRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNF 113          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: ERF36_ARATH (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.470e-15
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 2
Query:  290 NSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVF 535
            +S S+S   + P      +YRG+R R WGKW +EIR PRK  R+WLGTF TA+ AARA+D  A  I+G  A +NFP    +F
Sbjct:   66 SSASSSSSMQHP------VYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSSAVLNFPELASLF 141          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: DRE2H_ARATH (Putative dehydration-responsive element-binding protein 2H OS=Arabidopsis thaliana GN=DREB2H PE=5 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 4.470e-15
Identity = 45/123 (36.59%), Postives = 65/123 (52.85%), Query Frame = 2
Query:  203 LPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDEKK-----PKRQRKNL-------------YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 517
            +P   +S    D  + L K +     +  +SC   G  K      PKR RK               Y G+RQR WGKW AEIR+P +G ++WLGTF+++ EAA AYD+ ++ I G+ A++N P
Sbjct:    1 MPRKRKSRGTRDVAEILRKWREYNEQTEADSCIDGGGSKPIRKAPPKRSRKGCMKGKGGPENGICDYTGVRQRTWGKWVAEIREPGRGAKLWLGTFSSSYEAALAYDEASKAIYGQSARLNLP 123          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.838e-15
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 2
Query:  317 KKPKRQ----RKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 523
            +KPKR      +  Y+GIR R WGKW AEIR+P K  R+WLG++ TA  AARAYD     +RG  A++NFP E
Sbjct:   22 EKPKRNLISSNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEE 94          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.838e-15
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 2
Query:  329 RQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVT 544
            R+R   Y+GIR R WGKW AEIR+P K  R+WLG+++T E AARAYD     +RG  A++NFP      TVT
Sbjct:   24 RKRDKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPELLAGVTVT 95          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: DRE2A_ORYSJ (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. japonica GN=DREB2A PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.838e-15
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  347 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 514
            YRG+RQR WGKW AEIR+P +G R+WLG+F TA EAA AYD+ AR + G  A+VNF
Sbjct:   76 YRGVRQRTWGKWVAEIREPNRGRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNF 131          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: DRE2A_ORYSI (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. indica GN=DREB2A PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 5.838e-15
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  347 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 514
            YRG+RQR WGKW AEIR+P +G R+WLG+F TA EAA AYD+ AR + G  A+VNF
Sbjct:   76 YRGVRQRTWGKWVAEIREPNRGRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNF 131          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: ERF87_ARATH (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.624e-15
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  293 SCSASGDEKKPKRQRKN----------LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 514
            SCS S    + K+Q+             Y G+R+RPWG++AAEIR+P    R WLGTF+TAEEAA AYD+ AR IRG  A+ NF
Sbjct:   11 SCSRSKKSHRQKQQQPQPQPQQHIEEIKYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNF 94          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: DRE2B_ARATH (Dehydration-responsive element-binding protein 2B OS=Arabidopsis thaliana GN=DREB2B PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.624e-15
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 2
Query:  347 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 517
            +RG+RQR WGKW AEIR+P+ G R+WLGTF TAE+AA AYD+ A  + G  A++NFP
Sbjct:   78 FRGVRQRIWGKWVAEIREPKIGTRLWLGTFPTAEKAASAYDEAATAMYGSLARLNFP 134          
BLAST of DY260354 vs. ExPASy Swiss-Prot
Match: DRE1C_ARATH (Dehydration-responsive element-binding protein 1C OS=Arabidopsis thaliana GN=DREB1C PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 9.958e-15
Identity = 42/99 (42.42%), Postives = 55/99 (55.56%), Query Frame = 2
Query:  221 STPFSDEHQSLAKIKRPQPPSYLNSCSAS-GDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 514
            S  F  +++S         P    SC       KK +  R  +YRG+RQR  GKW  E+R+P K  R+WLGTF TAE AARA+D  A  +RG+ A +NF
Sbjct:    8 SEMFGSDYESPVSSGGDYSPKLATSCPKKPAGRKKFRETRHPIYRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAEMAARAHDVAAIALRGRSACLNF 106          
The following BLAST results are available for this feature:
BLAST of DY260354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
ESR2_ARATH4.470e-1567.86Ethylene-responsive transcription factor ESR2 OS=A... [more]
ERF36_ARATH4.470e-1548.78Ethylene-responsive transcription factor ERF036 OS... [more]
DRE2H_ARATH4.470e-1536.59Putative dehydration-responsive element-binding pr... [more]
RAP29_ARATH5.838e-1552.05Ethylene-responsive transcription factor RAP2-9 OS... [more]
RA210_ARATH5.838e-1552.78Ethylene-responsive transcription factor RAP2-10 O... [more]
DRE2A_ORYSJ5.838e-1564.29Dehydration-responsive element-binding protein 2A ... [more]
DRE2A_ORYSI5.838e-1564.29Dehydration-responsive element-binding protein 2A ... [more]
ERF87_ARATH7.624e-1550.00Ethylene-responsive transcription factor ERF087 OS... [more]
DRE2B_ARATH7.624e-1561.40Dehydration-responsive element-binding protein 2B ... [more]
DRE1C_ARATH9.958e-1542.42Dehydration-responsive element-binding protein 1C ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YD20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260354 ID=DY260354; Name=DY260354; organism=Citrus clementina; type=EST; length=997bp
CGCATCTTCTTTTCTCTTACTAATCGCCAAAACCACAGCCTGACCTGATC
GCTAGTTTAGTTTCAGTGCTTTATTATTACATTTACTTGCGGAAAGAATG
TGTGGCGGTTCTATCTTAGGAGACTTCTTTCCTCGCCACGGCGGCAGCCG
CGTCACCGCTTCCGACCTCTGGCCCAACTCACCCTTCGCTGCTACTAAAC
AACTCCCTCACAACTTTGAATCTACTCCGTTCTCCGATGAACACCAGTCA
CTGGCCAAAATCAAACGCCCTCAACCCCCTTCATATCTAAACTCCTGTTC
AGCTTCAGGTGATGAGAAAAAGCCCAAGAGGCAGAGGAAGAATCTCTACA
GGGGAATAAGGCAACGCCCCTGGGGCAAATGGGCAGCTGAGATTCGTGAC
CCAAGGAAAGGAGTTCGAGTCTGGCTCGGCACATTCAACACTGCCGAAGA
AGCAGCTCGAGCCTATGACAAAGAAGCCCGCAAGATTCGCGGCAAGAAAG
CCAAAGTCAACTTCCCCAACGAAGAGGACGTCTTCACCGTCACCCCTGCT
GCTGCCGCCCATGCTTACCATCATCATCAGCATAATCATAATCCCACTCC
CAGTCCCCTTCCTTCTCTTTCCCAAGAAGATCTTTTTAGTCGTAATAACT
CATCTATAAGTAGTGTTGGGTTTGGCTTGTATGGTTATGATCTGAACCCC
CCGATTGTACTTCTGGTGGTGACGAAAATTTCCGGGACTGGTTCTGGGTC
TGTTTCCAAAGGTGGGTACCAATCCACAGAAACTATGCTGAATTGCAACC
CGAAAGTCCATGAAGGGTCGTTTGCCTCCAATGAAGGGAAAGCCCAAAAA
ACAAAAAAAAAAAAAAAACCAAAACCCTAAAAAAGAAAAAAAACAAAGTG
CCAAAAACCTTCCGAAGGAACTTATGGGCTAACAAAAAATTTCCAGGAAT
TTTCATCCCCCTTTCCCTAATCCCCATGGGGCACACCCCCCCTTTGC
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