DY260357

Overview
NameDY260357
Unique NameDY260357
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1144
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13385 contig Ccv1_Contig13385:497..1640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260357 vs. ExPASy Swiss-Prot
Match: PUM1_HUMAN (Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.856e-15
Identity = 46/169 (27.22%), Postives = 89/169 (52.66%), Query Frame = 2
Query:  164 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYPLNEVADNCYGIATEKNGWWVL 670
            LR++ G+I+  ++DQ+G R +Q  +      E +++F E++    +LM+D FGNYV+QK  E  S EQ+  +   +      ++ + L  +G R + K LE + + QQ  +V   L    +   KD NG++V+Q C++    +  ++ ++      + ++T   G  V+
Sbjct:  846 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPSDQQNEMV-RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 1010          

HSP 2 Score: 75.0998 bits (183), Expect = 8.622e-13
Identity = 53/184 (28.80%), Postives = 92/184 (50.00%), Query Frame = 2
Query:  128 NQWLQDSFDCSSLRD-------LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYPLNEVADNCYGIATEK 652
            N  +Q  F+  SL         +RG++++LA   YGCR +Q+ +  +P ++   +  E+   V + + D  GN+VVQK +E C + Q  + ++    D F+     L+TH  G R + ++LE+   P Q   +L  L      L +D  G+YVIQ+ ++H   ED    + E+  N   ++  K
Sbjct:  899 NYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHK 1076          
BLAST of DY260357 vs. ExPASy Swiss-Prot
Match: PUM1_CHICK (Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.166e-15
Identity = 46/170 (27.06%), Postives = 90/170 (52.94%), Query Frame = 2
Query:  164 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQ-ISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYPLNEVADNCYGIATEKNGWWVL 670
            LR++ G+I+  ++DQ+G R +Q  +      E +++F E++    +LM+D FGNYV+QK  E  S EQ+  +   +      ++ + L  +G R + K LE +   QQ I+ ++  L    +   KD NG++V+Q C++    +  ++ ++      + ++T   G  V+
Sbjct:  847 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 1013          

HSP 2 Score: 73.1738 bits (178), Expect = 3.276e-12
Identity = 54/186 (29.03%), Postives = 94/186 (50.54%), Query Frame = 2
Query:  128 NQWLQDSFDCSSLRD-------LRGNIVALAKDQYGCRHLQRTMSSLPKEE--IEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYPLNEVADNCYGIATEK 652
            N  +Q  F+  SL         +RG++++LA   YGCR +Q+ +  +P ++  I  +  E+   V + + D  GN+VVQK +E C + Q  + ++    D F+     L+TH  G R + ++LE+   P+Q   +L  L      L +D  G+YVIQ+ ++H   ED    + E+  N   ++  K
Sbjct:  900 NYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHK 1079          
BLAST of DY260357 vs. ExPASy Swiss-Prot
Match: PUF3_SCHPO (mRNA-binding protein puf3 OS=Schizosaccharomyces pombe GN=puf3 PE=2 SV=4)

HSP 1 Score: 80.8777 bits (198), Expect = 1.571e-14
Identity = 48/139 (34.53%), Postives = 78/139 (56.12%), Query Frame = 2
Query:  164 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVC-ELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVK 577
            L D+ GN+V  + DQ+G R +Q+ +++  +EE E +F E+    C +LM+D FGNYVVQK  E  +E+Q+  +L  +    F L    L  +G R V K +E ++   Q+ L+   L    +    D NG++VIQ  ++
Sbjct:  394 LSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSL---SLQMYGCRVVQKAIEYISPEHQVQLI-QELDGHVLDCVCDQNGNHVIQKAIE 528          
The following BLAST results are available for this feature:
BLAST of DY260357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PUM1_HUMAN1.856e-1527.22Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=... [more]
PUM1_CHICK3.166e-1527.06Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV... [more]
PUF3_SCHPO1.571e-1434.53mRNA-binding protein puf3 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YD23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260357 ID=DY260357; Name=DY260357; organism=Citrus clementina; type=EST; length=1144bp
GATAAACCAAGATTCATCCATTTTGAATCTTCTACATAATCATAATTTTG
ATGGGTTACGCTCTAACGGAAATGAGTTATCCTCGGTGCCAAGAAACCAA
TGGATGTCCAGTTTGAGTCTTAAGAGAAATCAATGGTTGCAGGATTCATT
TGATTGTTCATCTTTGAGAGATTTGAGGGGCAACATTGTGGCTTTAGCCA
AGGATCAATATGGTTGTCGCCACCTGCAGCGGACTATGAGTAGCTTGCCG
AAAGAGGAAATTGAGATGATTTTCGTGGAGGTGATTGATCGTGTGTGTGA
GTTGATGATTGACCCATTTGGGAATTATGTTGTACAAAAGCTTGTAGAGT
TATGTAGTGAGGAACAGAGGACTCGTATTCTTCTTATGCTGACAAACGAT
GATTTTCAACTTGTCCGGATTTGTCTTAACACTCATGGGATTCGTGCTGT
ACTGAAATTGTTAGAGAATCTTACTAATCCACAGCAAATATCATTGGTTT
TAGCAGCTCTACGCCCTGGGGCAGTTACATTGACCAAGGACACCAATGGT
CATTATGTGATCCAGTATTGTGTGAAACATTTCTCTCACGAAGACACTAA
ATATCCATTGAATGAGGTGGCAGATAATTGCTATGGAATTGCAACGGAAA
AAAATGGGTGGTGGGTATTGCCACCTTTGTGCTCGAATACCCCAAGGGGG
CCCACACACAGCGTCCTGGGGGGAAAAATAATACCACATTCACTACCTGT
TTTCCAAAACAACGTTATGGCAACCAAGTCTGTGGAACACTAATTGGAAC
GGAGCGTACCCACCAAAACCGCACAACCCCTCCGACCCCCCTTGCCAAGG
CCCAAATGCCCCCTCTCCATCGCCATCACCCTTGCGACTCCCATTTTCTA
CTTATTTCCCTTTACATAATTCACCCAAACCACACCCCACAGCTCGAAGA
AATCCCTATTCCCCCTATTACATAACACACCCACATCTTTTCTTTCTCCC
CCCCTCTACTACTCCTATCTCCGCCCTGACCCCCATGCCTACTTGACCGT
TATGTTCCGATGGCTATCTCCATTCCTGCGAACATTACTATCTGAGTTGA
CTATGTATCCCTTTGTTCCACCATCATACCATTTCCCTCCCTTC
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