DY260357
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY260357 vs. ExPASy Swiss-Prot
Match: PUM1_HUMAN (Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3) HSP 1 Score: 83.9593 bits (206), Expect = 1.856e-15 Identity = 46/169 (27.22%), Postives = 89/169 (52.66%), Query Frame = 2 Query: 164 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYPLNEVADNCYGIATEKNGWWVL 670 LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK E S EQ+ + + ++ + L +G R + K LE + + QQ +V L + KD NG++V+Q C++ + ++ ++ + ++T G V+ Sbjct: 846 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPSDQQNEMV-RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 1010 HSP 2 Score: 75.0998 bits (183), Expect = 8.622e-13 Identity = 53/184 (28.80%), Postives = 92/184 (50.00%), Query Frame = 2 Query: 128 NQWLQDSFDCSSLRD-------LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYPLNEVADNCYGIATEK 652 N +Q F+ SL +RG++++LA YGCR +Q+ + +P ++ + E+ V + + D GN+VVQK +E C + Q + ++ D F+ L+TH G R + ++LE+ P Q +L L L +D G+YVIQ+ ++H ED + E+ N ++ K Sbjct: 899 NYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHK 1076
BLAST of DY260357 vs. ExPASy Swiss-Prot
Match: PUM1_CHICK (Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 3.166e-15 Identity = 46/170 (27.06%), Postives = 90/170 (52.94%), Query Frame = 2 Query: 164 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQ-ISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYPLNEVADNCYGIATEKNGWWVL 670 LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK E S EQ+ + + ++ + L +G R + K LE + QQ I+ ++ L + KD NG++V+Q C++ + ++ ++ + ++T G V+ Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 1013 HSP 2 Score: 73.1738 bits (178), Expect = 3.276e-12 Identity = 54/186 (29.03%), Postives = 94/186 (50.54%), Query Frame = 2 Query: 128 NQWLQDSFDCSSLRD-------LRGNIVALAKDQYGCRHLQRTMSSLPKEE--IEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYPLNEVADNCYGIATEK 652 N +Q F+ SL +RG++++LA YGCR +Q+ + +P ++ I + E+ V + + D GN+VVQK +E C + Q + ++ D F+ L+TH G R + ++LE+ P+Q +L L L +D G+YVIQ+ ++H ED + E+ N ++ K Sbjct: 900 NYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHK 1079
BLAST of DY260357 vs. ExPASy Swiss-Prot
Match: PUF3_SCHPO (mRNA-binding protein puf3 OS=Schizosaccharomyces pombe GN=puf3 PE=2 SV=4) HSP 1 Score: 80.8777 bits (198), Expect = 1.571e-14 Identity = 48/139 (34.53%), Postives = 78/139 (56.12%), Query Frame = 2 Query: 164 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVC-ELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVK 577 L D+ GN+V + DQ+G R +Q+ +++ +EE E +F E+ C +LM+D FGNYVVQK E +E+Q+ +L + F L L +G R V K +E ++ Q+ L+ L + D NG++VIQ ++ Sbjct: 394 LSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSL---SLQMYGCRVVQKAIEYISPEHQVQLI-QELDGHVLDCVCDQNGNHVIQKAIE 528 The following BLAST results are available for this feature:
BLAST of DY260357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY260357 ID=DY260357; Name=DY260357; organism=Citrus clementina; type=EST; length=1144bpback to top |