DY260358

Overview
NameDY260358
Unique NameDY260358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1113
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 8.329e-13
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  228 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 533
            +F++A  AEF+A  +F+ +++ + +     K     V +  I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++VFY+  QCLGAI GA ++
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWG-GKENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL 133          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.088e-12
Identity = 44/119 (36.97%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  237 RAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK---GLQKSQYEMLGGGA 578
            +A +AEF++T +F++  V + +  +K    +     G+  +A   G  +F  V   A ISGGH+NPAVTFGL L  ++++   VFY I Q LGAI GA +V+   G+    + + G GA
Sbjct:   20 KAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPAGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCTGVATPTHGLSGVGA 138          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.855e-12
Identity = 39/102 (38.24%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  228 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 533
            +F++A  AEF+A  +F+ +++ + +    ++ K   V +  I+  FG  I  +V C   ISGGHINPAVT  +   R++S+ ++VFY+  QCLGAI GA ++
Sbjct:   33 TFWKAVTAEFLAMLIFVLLSLGSTINWGGAE-KPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGIL 133          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.423e-12
Identity = 41/107 (38.32%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  213 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 533
            E+ S +F++A  AEF+AT +F++  + + +     K   +   I  I+ AFG  I  L      +SGGHINPA+T  L +  ++SL RAVFY+  Q +GAI GA ++
Sbjct:    4 EVCSLAFFKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGIL 105          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.165e-12
Identity = 40/112 (35.71%), Postives = 62/112 (55.36%), Query Frame = 3
Query:  207 PGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK 536
            PGELS     +A +AEF++T +F++    + M  SK       +  G+   + A    +F  V   A ISGGH+NPAVTFG F+   +SL +A+ Y + Q LG++    ++K
Sbjct:   11 PGELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLK 122          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.165e-12
Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  213 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 533
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA+ Y++ Q LGA+ GAAV+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL 104          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.165e-12
Identity = 44/107 (41.12%), Postives = 61/107 (57.01%), Query Frame = 3
Query:  213 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 533
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA+ YM  Q LGA+ GAAV+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVL 104          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: AQP_ANOGA (Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP008842 PE=3 SV=4)

HSP 1 Score: 73.1738 bits (178), Expect = 3.165e-12
Identity = 45/130 (34.62%), Postives = 70/130 (53.85%), Query Frame = 3
Query:  228 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGLQKSQYEMLGG-GAQLLSKRHSKGNG 614
            + +R  +AEF+ TF  + I + +  G +      +      IA+ FG ++  L      +SG HINPAVT GL +   +S+ +  FY++ QC+GAI GAAV+K    S  E++GG G   ++   S G G
Sbjct:   21 NIWRMLVAEFLGTFFLVAIGIGSTTGWTDYSPTLTQ-----IAFTFGLVVATLAQAFGHVSGCHINPAVTIGLIVTADVSILKGAFYIVSQCIGAIAGAAVIKAATPS--EVVGGLGVTGIAPGLSTGQG 143          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.133e-12
Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  213 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 533
            EL S SF+RA  AEF A+  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA+ YM+ Q LGA+ GAAV+
Sbjct:    3 ELRSASFWRAICAEFFASLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVL 104          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.133e-12
Identity = 40/107 (37.38%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  213 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 533
            E+ S +F++A  AEF+AT +F++  + + +     K   +   I  I+ AFG  I  L      +SGGHINPA+T  L +  ++SL RA+FY+  Q +GAI GA ++
Sbjct:    4 EVCSVAFFKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGIL 105          
The following BLAST results are available for this feature:
BLAST of DY260358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
AQP4_DIPME8.329e-1339.22Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
TIP22_ORYSJ1.088e-1236.97Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
AQP4_BOVIN1.855e-1238.24Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
AQP5_RAT2.423e-1238.32Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
TIP12_MAIZE3.165e-1235.71Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
MIP_SHEEP3.165e-1240.19Lens fiber major intrinsic protein OS=Ovis aries G... [more]
MIP_RABIT3.165e-1241.12Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
AQP_ANOGA3.165e-1234.62Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP0088... [more]
MIP_BOVIN4.133e-1240.19Lens fiber major intrinsic protein OS=Bos taurus G... [more]
AQP5_MOUSE4.133e-1237.38Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YD24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260358 ID=DY260358; Name=DY260358; organism=Citrus clementina; type=EST; length=1113bp
CGTTGTGCCATTTATTGATTCAATTCACTCCCAAGAAACTTGAACCTATC
TTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGAAGAGGATGT
AAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTGGAACCGCGG
CTCAGACTCAGGATGTGAAGGATTACACGGAGCCACCTCCGGCGCCGCTC
TTTGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGCTGGCATTGC
GGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTCTAACAGTGA
TGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGAATCCAGGGC
ATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTACTGCACTGC
TGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCGGGCTGTTCT
TGGCCCGAAAGCTGTCGCTTACCAGGGCAGTTTTTTACATGATAATGCAG
TGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCCTTCAGAAAAG
CCAATATGAAATGCTAGGCGGCGGTGCCCAACTGCTCAGCAAAAGGCACA
GCAAGGGAAATGGCCCTTGGACCCAAGATTGTTGGTACCCTTTGGTCTTG
TTTACACGGCCCTCCCCGCCCCGGGAAGCCAAACCGCAACGCCCCGCGAA
TTCCCATGTTCCAATACTGGGCCGCCCTCCCCACCGCATCTTGCCTTGGC
TTATGTCTCGAACCTGCCCAACAAATCACAATCCCCAGAACAACGCTCAT
ACCTCCCCTAAGCGACTCTGGTCCCCACTCCCCCCACAGAACAAAAAGAG
AAGCCCCGGGAACTGCTCGTTAATCTTTTCTTTCACATGGCGTATTCCCT
CCCACCCAGACCCCCCCCCCCCCCACCCACCACACCACTCCCACTCAGGG
AGCCCCCCCATTCCAACTCCACACACCACACATTCTAACTCATCCAAATC
ACCCTACATTATTCACCTTTAGACAAAAATCAAAGACCATAGTCAACCCC
TCATCACCCCCGAACGCCACCACCAAATATCCTCCTCCTGTTAATACCCT
ACCATCTTCACCC
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