DY260358

Overview
NameDY260358
Unique NameDY260358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1113
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.133e-12
Identity = 42/110 (38.18%), Postives = 63/110 (57.27%), Query Frame = 3
Query:  213 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGL 542
            E+ S +F +A  AEF+AT +F++  + + +     K   +   I  IA AFG  I  L      +SGGHINPA+T  L +  ++SL RA FY+  Q +GAI GA ++ G+
Sbjct:    4 EVCSVAFLKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV 108          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.398e-12
Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 3
Query:  237 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK 536
            RA I+EF+AT +F++    +V+ + K     ST G +  +A A    +   V     ISGGH+NPAVTFG  +  ++SL RAV Y + Q LGA+    +++
Sbjct:   26 RAAISEFIATAIFVFAAEGSVLSLGKMYHDMSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLR 126          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 7.051e-12
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 3
Query:  237 RAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK 536
            RA +AEF++T LF++  V + +  +K  S +   T G+  IA   G  +F  V   A ISGGH+NPAVTFGL +  ++++   VFY I Q LG+     ++K
Sbjct:   19 RAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLK 120          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: YI7H_SCHPO (Uncharacterized membrane protein C977.17 OS=Schizosaccharomyces pombe GN=SPAC977.17 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.208e-12
Identity = 53/152 (34.87%), Postives = 65/152 (42.76%), Query Frame = 3
Query:  231 FYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQG------IAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGLQKSQYEMLGGGAQLLSKRHSKGNGPWTQDCWYPLVLFTRPSP 668
            F+R G AEF+ T       VL V GV  +     T G  G       AW FG M+   VY   GISGGH+NPAVT  L + RK    +   Y+  Q  GA  G A+  G   S      GG  + +        P T  C     L+T P P
Sbjct:  309 FFREGFAEFLGTL------VLVVFGVGSNLQATVTNGAGGSFESLSFAWGFGCMLG--VYIAGGISGGHVNPAVTISLAIFRKFPWYKVPIYIFFQIWGAFFGGALAYGYHWSSITEFEGGKDIRT--------PATGGC-----LYTNPKP 439          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.208e-12
Identity = 43/107 (40.19%), Postives = 59/107 (55.14%), Query Frame = 3
Query:  213 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 533
            EL S SF+RA  AEF AT  +++  +      S  +     + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  YM  Q LGA+ GAAV+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGL-----GSSLRWAPGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL 104          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.208e-12
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 3
Query:  213 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 533
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  YM  Q LGA+ GAAV+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWTP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL 104          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.203e-11
Identity = 37/101 (36.63%), Postives = 59/101 (58.42%), Query Frame = 3
Query:  237 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK 536
            RA I+EF+AT +F++    +++ + K     ST G +  ++ A    +   V     ISGGH+NPA+TFG  L  +LSL RA+FY + Q LGA+    +++
Sbjct:   27 RAAISEFLATAIFVFAAEGSILSLGKLYQDMSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLR 127          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.203e-11
Identity = 40/123 (32.52%), Postives = 67/123 (54.47%), Query Frame = 3
Query:  207 PGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGLQKSQYEMLG 569
            P E +     +AG+AEF++TF+F++    + +  +K  +    +  G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++L R + Y+I Q LG+I  +A++  +  S     G
Sbjct:   11 PQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTASSVPAFG 133          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.571e-11
Identity = 42/116 (36.21%), Postives = 62/116 (53.45%), Query Frame = 3
Query:  213 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGLQKSQYE 560
            E+ +  F+R+ I+E +A+F++++I      GV    S  S   +   A A G  +  L  C   ISG HINPAVT  L + R +S  RA  Y+  QC G I GAA++ G+    Y+
Sbjct:   58 EIRTLEFWRSIISECLASFMYVFIVCGAAAGVGVGASVSSV--LLATALASGLAMATLTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALLYGVTVPGYQ 171          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: AQP2_SHEEP (Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.571e-11
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = 3
Query:  213 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 533
            EL S +F RA +AEF+AT LF++  + + +   ++        +  IA AFG  I  LV     +SG HINPAVT    +   +S  RAVFY+  Q LGA+ GAA++
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALL 104          
The following BLAST results are available for this feature:
BLAST of DY260358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
AQP5_HUMAN4.133e-1238.18Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]
TIP31_MAIZE5.398e-1237.62Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP21_ARATH7.051e-1239.22Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
YI7H_SCHPO9.208e-1234.87Uncharacterized membrane protein C977.17 OS=Schizo... [more]
MIP_HUMAN9.208e-1240.19Lens fiber major intrinsic protein OS=Homo sapiens... [more]
MIP_CANFA9.208e-1241.12Lens fiber major intrinsic protein OS=Canis famili... [more]
TIP31_ORYSJ1.203e-1136.63Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP1_MEDTR1.203e-1132.52Probable aquaporin TIP-type OS=Medicago truncatula... [more]
BIB_DROME1.571e-1136.21Neurogenic protein big brain OS=Drosophila melanog... [more]
AQP2_SHEEP1.571e-1140.19Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YD24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260358 ID=DY260358; Name=DY260358; organism=Citrus clementina; type=EST; length=1113bp
CGTTGTGCCATTTATTGATTCAATTCACTCCCAAGAAACTTGAACCTATC
TTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGAAGAGGATGT
AAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTGGAACCGCGG
CTCAGACTCAGGATGTGAAGGATTACACGGAGCCACCTCCGGCGCCGCTC
TTTGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGCTGGCATTGC
GGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTCTAACAGTGA
TGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGAATCCAGGGC
ATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTACTGCACTGC
TGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCGGGCTGTTCT
TGGCCCGAAAGCTGTCGCTTACCAGGGCAGTTTTTTACATGATAATGCAG
TGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCCTTCAGAAAAG
CCAATATGAAATGCTAGGCGGCGGTGCCCAACTGCTCAGCAAAAGGCACA
GCAAGGGAAATGGCCCTTGGACCCAAGATTGTTGGTACCCTTTGGTCTTG
TTTACACGGCCCTCCCCGCCCCGGGAAGCCAAACCGCAACGCCCCGCGAA
TTCCCATGTTCCAATACTGGGCCGCCCTCCCCACCGCATCTTGCCTTGGC
TTATGTCTCGAACCTGCCCAACAAATCACAATCCCCAGAACAACGCTCAT
ACCTCCCCTAAGCGACTCTGGTCCCCACTCCCCCCACAGAACAAAAAGAG
AAGCCCCGGGAACTGCTCGTTAATCTTTTCTTTCACATGGCGTATTCCCT
CCCACCCAGACCCCCCCCCCCCCCACCCACCACACCACTCCCACTCAGGG
AGCCCCCCCATTCCAACTCCACACACCACACATTCTAACTCATCCAAATC
ACCCTACATTATTCACCTTTAGACAAAAATCAAAGACCATAGTCAACCCC
TCATCACCCCCGAACGCCACCACCAAATATCCTCCTCCTGTTAATACCCT
ACCATCTTCACCC
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