DY260358

Overview
NameDY260358
Unique NameDY260358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1113
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.571e-11
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = 3
Query:  213 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 533
            EL S +F RA +AEF+AT LF++  + + +   ++        +  IA AFG  I  LV     +SG HINPAVT    +   +S  RAVFY+  Q LGA+ GAA++
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALL 104          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.051e-11
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  210 GELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAI 515
            G+  S S  +A ++EF+AT LF++  V + +  +K  S       G+  IA A    +F  V   A ISGGH+NPAVT GL +   ++L    FY I QCLG+I
Sbjct:   10 GDSFSVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSI 113          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.051e-11
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 3
Query:  213 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 533
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  YM  Q LGA+ GAAV+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL 104          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.679e-11
Identity = 38/111 (34.23%), Postives = 62/111 (55.86%), Query Frame = 3
Query:  210 GELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK 536
            G+  S +  +A +AEF+AT LF++  V + +  +K  S +     G+  +A A    +F  V   A +SGGH+NPAVT GL +   +++   +FY I QCLG+     ++K
Sbjct:   10 GDSFSVASIKAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLK 120          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.679e-11
Identity = 44/140 (31.43%), Postives = 66/140 (47.14%), Query Frame = 3
Query:  207 PGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGLQKSQYEMLGGGAQLLSKRHSKGNGPW 620
            PGE S     RA  AEF +  +F++    + M   K       +  G+   + +    +F  V   A +SGGH+NPAVTFG F+   ++L RA+ Y I Q LGA+    ++K        +  GG +  +   S G  PW
Sbjct:   11 PGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLK--------VSTGGMETAAFSLSYGVTPW 142          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.499e-11
Identity = 38/102 (37.25%), Postives = 61/102 (59.80%), Query Frame = 3
Query:  237 RAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK 536
            RA +AEF +TF+F++    + + + K    S  S   +  +A A    +FA V  +  +SGGH+NPAV+FG  +  ++S+ RAV+Y I Q LG+I  A V++
Sbjct:   21 RASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLR 122          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 3.499e-11
Identity = 46/129 (35.66%), Postives = 66/129 (51.16%), Query Frame = 3
Query:  237 RAGIAEFVATFLFLYI----TVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGLQKSQ--------YEMLGGGAQLL 587
            RA  AEF +TFLF++I    T+   M      S  S++    +A AFG  +FA V+  A +SGGH+NPAVTF   +   +++  A+FY   Q LG+     V+  +   Q         EM G GA +L
Sbjct:   18 RAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFG--LFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTFACLVLHYISAGQAVPTTRIAVEMTGFGAGIL 144          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 3.499e-11
Identity = 42/107 (39.25%), Postives = 59/107 (55.14%), Query Frame = 3
Query:  213 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 533
            EL S SF+RA  AEF AT  +++  +      S  +     + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  Y+  Q LGA+ GAAV+
Sbjct:    1 ELRSASFWRAIFAEFFATLFYVFFGL-----GSSLRWAPGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVL 102          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 3.499e-11
Identity = 43/107 (40.19%), Postives = 60/107 (56.07%), Query Frame = 3
Query:  213 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 533
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  Y+  Q LGA+ GAAV+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVL 104          
BLAST of DY260358 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 3.499e-11
Identity = 43/107 (40.19%), Postives = 60/107 (56.07%), Query Frame = 3
Query:  213 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 533
            EL S +F RA +AEF+AT LF++  + + +  + S        +  IA AFG  I  LV     +SG HINPAVT    +   +S  RA FY+  Q LGA+ GAA++
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPPS-----VLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAIL 104          
The following BLAST results are available for this feature:
BLAST of DY260358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
AQP2_BOVIN1.571e-1140.19Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]
TIP23_ARATH2.051e-1139.42Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
MIP_CAVPO2.051e-1141.12Lens fiber major intrinsic protein OS=Cavia porcel... [more]
TIP_ANTMA2.679e-1134.23Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP13_ARATH2.679e-1131.43Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIPA_PHAVU3.499e-1137.25Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP51_ORYSJ3.499e-1135.66Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
MIP_RAT3.499e-1139.25Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE3.499e-1140.19Lens fiber major intrinsic protein OS=Mus musculus... [more]
AQP2_MOUSE3.499e-1140.19Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YD24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260358 ID=DY260358; Name=DY260358; organism=Citrus clementina; type=EST; length=1113bp
CGTTGTGCCATTTATTGATTCAATTCACTCCCAAGAAACTTGAACCTATC
TTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGAAGAGGATGT
AAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTGGAACCGCGG
CTCAGACTCAGGATGTGAAGGATTACACGGAGCCACCTCCGGCGCCGCTC
TTTGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGCTGGCATTGC
GGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTCTAACAGTGA
TGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGAATCCAGGGC
ATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTACTGCACTGC
TGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCGGGCTGTTCT
TGGCCCGAAAGCTGTCGCTTACCAGGGCAGTTTTTTACATGATAATGCAG
TGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCCTTCAGAAAAG
CCAATATGAAATGCTAGGCGGCGGTGCCCAACTGCTCAGCAAAAGGCACA
GCAAGGGAAATGGCCCTTGGACCCAAGATTGTTGGTACCCTTTGGTCTTG
TTTACACGGCCCTCCCCGCCCCGGGAAGCCAAACCGCAACGCCCCGCGAA
TTCCCATGTTCCAATACTGGGCCGCCCTCCCCACCGCATCTTGCCTTGGC
TTATGTCTCGAACCTGCCCAACAAATCACAATCCCCAGAACAACGCTCAT
ACCTCCCCTAAGCGACTCTGGTCCCCACTCCCCCCACAGAACAAAAAGAG
AAGCCCCGGGAACTGCTCGTTAATCTTTTCTTTCACATGGCGTATTCCCT
CCCACCCAGACCCCCCCCCCCCCCACCCACCACACCACTCCCACTCAGGG
AGCCCCCCCATTCCAACTCCACACACCACACATTCTAACTCATCCAAATC
ACCCTACATTATTCACCTTTAGACAAAAATCAAAGACCATAGTCAACCCC
TCATCACCCCCGAACGCCACCACCAAATATCCTCCTCCTGTTAATACCCT
ACCATCTTCACCC
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