DY260360

Overview
NameDY260360
Unique NameDY260360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1180
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260360 vs. ExPASy Swiss-Prot
Match: VATL2_ASHGO (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Ashbya gossypii GN=VMA11 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.304e-31
Identity = 66/148 (44.59%), Postives = 96/148 (64.86%), Query Frame = 2
Query:    5 APFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 448
            APFF F G  AA++LS +GAA GTAKSG+ ++ +G  RPEL+MKS++PVVM+G+L +YGL++AV+++ G++P  + Y LF+G+                  AIGIVGD GVR    QP+LFVG+            YG+I+ +IL++R
Sbjct:   14 APFFGFAGCAAAMILSSLGAAIGTAKSGIGISGIGTFRPELIMKSLIPVVMSGILAVYGLVVAVLVAGGLSP-TEEYTLFNGFMHLAAGLCVGFACLSSGYAIGIVGDVGVRKFMHQPRLFVGIVLILIFAEVLGLYGMIIALILNTR 160          
BLAST of DY260360 vs. ExPASy Swiss-Prot
Match: VATL_RAT (V-type proton ATPase 16 kDa proteolipid subunit OS=Rattus norvegicus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 5.622e-31
Identity = 73/146 (50.00%), Postives = 92/146 (63.01%), Query Frame = 2
Query:   11 FFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 448
            FF  +GA +A+V S MGAAYGTAKSG  +A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   13 FFGVMGASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
BLAST of DY260360 vs. ExPASy Swiss-Prot
Match: VATL_MOUSE (V-type proton ATPase 16 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 5.622e-31
Identity = 73/146 (50.00%), Postives = 92/146 (63.01%), Query Frame = 2
Query:   11 FFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 448
            FF  +GA +A+V S MGAAYGTAKSG  +A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   13 FFGVMGASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
BLAST of DY260360 vs. ExPASy Swiss-Prot
Match: VATL2_CANGA (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Candida glabrata GN=VMA11 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 5.622e-31
Identity = 66/148 (44.59%), Postives = 95/148 (64.19%), Query Frame = 2
Query:    5 APFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 448
            APFF F G   A++LSC+GAA GTAKSG+ +A +G  +PEL+MKS++PVVM+G+L IYGL++AV+I+  ++P  + Y LF+G+                  AIGIVGD GVR    QP+LFVG+            YG+I+ +IL+++
Sbjct:   15 APFFGFAGCALAMILSCLGAAIGTAKSGIGIAGIGTFKPELIMKSLIPVVMSGILAIYGLVVAVLIAGNLSP-TEEYTLFNGFMHLSCGLCVGFACLSSGYAIGIVGDVGVRKYMHQPRLFVGIVLILIFSEVLGLYGMIIALILNTK 161          
BLAST of DY260360 vs. ExPASy Swiss-Prot
Match: VATL_DICDI (V-type proton ATPase proteolipid subunit OS=Dictyostelium discoideum GN=vatP PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.252e-30
Identity = 73/147 (49.66%), Postives = 94/147 (63.95%), Query Frame = 2
Query:    5 APFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 445
            APFF  +G  AALV + MGAAYGTAK+ + +++MGVM+P+LV+K+ +PV+ AGV+ IYGLII VI+  GI P A +Y L   +                 MAIGIVGD+GVRA  QQPKL+V M            YGLI+GI+LSS
Sbjct:   28 APFFGAMGVTAALVFTVMGAAYGTAKASVGISNMGVMKPDLVIKAFIPVIFAGVIAIYGLIICVILVGGIKPNA-NYTLMKSFTDLGAGLTVGLCGLAAGMAIGIVGDSGVRAFGQQPKLYVIMMLILIFSEALGLYGLIIGILLSS 173          
BLAST of DY260360 vs. ExPASy Swiss-Prot
Match: VATL_CANTR (V-type proton ATPase 16 kDa proteolipid subunit OS=Candida tropicalis GN=VMA3 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.636e-30
Identity = 68/149 (45.64%), Postives = 95/149 (63.76%), Query Frame = 2
Query:    5 APFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRA 451
            APFF  +G  AA+V +C GA+YGTAKSG+ + +  V RP+L++K++VPVVMAG++ IYGL+++V++S  +   +Q   L+ G+                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV ++L+SRA
Sbjct:    9 APFFGSIGCAAAIVFTCFGASYGTAKSGVGICATSVTRPDLLVKNVVPVVMAGIIAIYGLVVSVLVSDSL---SQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRA 154          
BLAST of DY260360 vs. ExPASy Swiss-Prot
Match: VATL2_DEBHA (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Debaryomyces hansenii GN=VMA11 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 6.216e-30
Identity = 63/148 (42.57%), Postives = 96/148 (64.86%), Query Frame = 2
Query:    5 APFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 448
            APF  F G  AA++LSC GAA GTAKSG+ ++ +G  +PEL+MKS++PVVM+G+L +YGL+++V+I+ G++P  ++Y LF+G+                  +IGIVGD GVR    QP+LFVG+            YG+I+ +IL+++
Sbjct:   14 APFLGFAGCAAAMILSCAGAAIGTAKSGIGISGIGTFKPELIMKSLIPVVMSGILSVYGLVVSVLIAGGLSP-TENYSLFNGFMHLACGLSVGFACLASGYSIGIVGDEGVRQFMHQPRLFVGIVLILIFAEVLGLYGMIIALILNTK 160          
BLAST of DY260360 vs. ExPASy Swiss-Prot
Match: VATL_SCHPO (V-type proton ATPase 16 kDa proteolipid subunit OS=Schizosaccharomyces pombe GN=vma3 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.060e-29
Identity = 67/149 (44.97%), Postives = 95/149 (63.76%), Query Frame = 2
Query:    5 APFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRA 451
            APFF  +G  AA+V +  GAAYGTAK+G+ +++MGV+RP+L++K+ +PVVMAG++ IYGL+++V+IS  +    Q   L+ G+                  AIGIVGDAGVR  AQQP+LFV M            YGLIV ++L++RA
Sbjct:   10 APFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAIYGLVVSVLISGNLK---QILSLYSGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQPRLFVAMILILIFAEVLGLYGLIVALLLNTRA 155          
BLAST of DY260360 vs. ExPASy Swiss-Prot
Match: VATL1_CAEEL (V-type proton ATPase 16 kDa proteolipid subunit 1 OS=Caenorhabditis elegans GN=vha-1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 6.872e-29
Identity = 65/146 (44.52%), Postives = 90/146 (61.64%), Query Frame = 2
Query:    8 PFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 445
            PFF  LG  +A+  +  G+AYGTAK+G  +ASM V RP+LVMK+I+PVVMAG++ IYGL++AVI+S  + P   +Y + + +                  AIGI GDAGVRA +QQP++FVGM            YG+IV +IL +
Sbjct:   23 PFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIYGLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVRALSQQPRMFVGMILILIFAEVLGLYGMIVALILGA 168          
BLAST of DY260360 vs. ExPASy Swiss-Prot
Match: VATL1_YEAST (V-type proton ATPase subunit c OS=Saccharomyces cerevisiae GN=VMA3 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.611e-28
Identity = 64/149 (42.95%), Postives = 94/149 (63.09%), Query Frame = 2
Query:    5 APFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRA 451
            APFF  +G  +A++ + +GAAYGTAKSG+ + +  V+RP+L+ K+IVPV+MAG++ IYGL+++V++   +    Q   L+ G+                  AIGIVGDAGVR ++QQP+LFVGM            YGLIV ++L+SRA
Sbjct:    9 APFFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSL---GQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRA 154          
The following BLAST results are available for this feature:
BLAST of DY260360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
VATL2_ASHGO4.304e-3144.59V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_RAT5.622e-3150.00V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MOUSE5.622e-3150.00V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_CANGA5.622e-3144.59V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_DICDI1.252e-3049.66V-type proton ATPase proteolipid subunit OS=Dictyo... [more]
VATL_CANTR1.636e-3045.64V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_DEBHA6.216e-3042.57V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_SCHPO1.060e-2944.97V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL1_CAEEL6.872e-2944.52V-type proton ATPase 16 kDa proteolipid subunit 1 ... [more]
VATL1_YEAST2.611e-2842.95V-type proton ATPase subunit c OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YE02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260360 ID=DY260360; Name=DY260360; organism=Citrus clementina; type=EST; length=1180bp
AACCGCTCCTTTCTTCCGCTTTCTCGGCGCCCCTGCCGCCCTAGTCCTTT
CCTGTATGGGAGCCGCCTACGGAACGGCCAAGAGTGGCCTCCGTGTGGCC
TCCATGGGAGTGATGAGGCCGGAGCTTGTGATGAAATCGATCGTGCCCGT
TGTTATGGCGGGAGTTTTGGGTATTTACGGTTTGATTATTGCTGTTATTA
TTAGTACCGGAATTAACCCTAAGGCCCAATCTTATTACCTTTTCGATGGC
TACGCGCATCTCTCTTCTGGCCTCGCTTGTGGCCTTGCTGGTCTCTCCGC
TGGTATGGCAATTGGGATCGTCGGTGATGCTGGTGTCAGAGCCAATGCTC
AACAGCCGAAGCTTTTCGTTGGGATGATCCTCATTCTGATCTTTGCTGAA
GCGCTGGCACTTTATGGACTTATTGTTGGTATCATTCTTTCTTCTCGTGC
TGGTCCGTCCAGAGCAGACTAGAAGAGGATGCTTTGCTTGGTGGTTATTT
GGCCTGTTGTGTTCCATTAAGAAGAATTCAGTTCATATTGCCTGTGACGG
GAGGTGGTAGTCTGCGTTGGGTAGTGTTTTTCTTTTTCCACTTAAAAGTT
ATTGTCCGTGGTGTGATTGTTCCACCCCATTGATTCCATTTTTAATGGTG
ACGGACGATGGTAAATTTACGAATTACCCTCCCCCCCTACTCACCTCCGC
CCCGTCCTTGCTTTAGTTCAATGGTAACACGCCCGCACTTTTTTGGGAAC
CCCTTTCCACGTCGCCCACCCCCCCACCATCCCCCCCTAACGCTCTCCCC
CCACCCCCCCCCCCACCCCTCCCCCCCCTCTCTCCTCCCCCAAACCCTCT
GTCTCCCCCCCCCCTCCCTCCCCCCCCCCCCCTCCCGCTCTCCCCATCCC
CCCCACACCCACCACCCCCCCCCTCCCCCCCCTCCCCACTCCGCCCCTCC
CACCCAGCCTCCCCCTTCCCCCCTCCCCCCCCGGACCCCGCCCCCCCCCC
CCCCCTCACCACCCACTCCCCCCCTCCCCCTACCCCACCCCCCCCCCCCC
CCACCCCGCGCCCCTACCCCTCCCCCACCCCCCCCGCCCCTACCCCTCGC
CCCCCGCCCCCCCCCCCCTCTCCACCATCCCTCCCCCTCCCGCCCCTCTC
TCCACTCCCTCACCCCCCCCCCTCCCTCTC
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