DY260365

Overview
NameDY260365
Unique NameDY260365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1202
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260365 vs. ExPASy Swiss-Prot
Match: CLIC4_RAT (Chloride intracellular channel protein 4 OS=Rattus norvegicus GN=Clic4 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 2.201e-14
Identity = 54/212 (25.47%), Postives = 100/212 (47.17%), Query Frame = 2
Query:   41 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT-KAEKQYVIA 607
            +G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K+    F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y    ++ + F  T  ++K+  IA
Sbjct:   32 IGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPAHLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPGEIDENSMEDIKSSTRRFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNTCPSDKEVEIA 243          
BLAST of DY260365 vs. ExPASy Swiss-Prot
Match: CLIC4_PONAB (Chloride intracellular channel protein 4 OS=Pongo abelii GN=CLIC4 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 4.903e-14
Identity = 54/212 (25.47%), Postives = 99/212 (46.70%), Query Frame = 2
Query:   41 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT-KAEKQYVIA 607
            +G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y    ++ + F  T  ++K+  IA
Sbjct:   32 IGNCPFSQRLFMILWLKGVVFSVSTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRDEFTNTCPSDKEVEIA 243          
BLAST of DY260365 vs. ExPASy Swiss-Prot
Match: CLIC4_MOUSE (Chloride intracellular channel protein 4 OS=Mus musculus GN=Clic4 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 8.364e-14
Identity = 54/212 (25.47%), Postives = 99/212 (46.70%), Query Frame = 2
Query:   41 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT-KAEKQYVIA 607
            +G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y    ++ + F  T  ++K+  IA
Sbjct:   32 IGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRRFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNTCPSDKEVEIA 243          
BLAST of DY260365 vs. ExPASy Swiss-Prot
Match: CLIC4_BOVIN (Chloride intracellular channel protein 4 OS=Bos taurus GN=CLIC4 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 8.364e-14
Identity = 54/212 (25.47%), Postives = 99/212 (46.70%), Query Frame = 2
Query:   41 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT-KAEKQYVIA 607
            +G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+++   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G ++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y    ++ + F  T  ++K+  IA
Sbjct:   32 IGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNNEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNTCPSDKEVEIA 243          
BLAST of DY260365 vs. ExPASy Swiss-Prot
Match: CLIC4_HUMAN (Chloride intracellular channel protein 4 OS=Homo sapiens GN=CLIC4 PE=1 SV=4)

HSP 1 Score: 78.1814 bits (191), Expect = 1.092e-13
Identity = 54/212 (25.47%), Postives = 98/212 (46.23%), Query Frame = 2
Query:   41 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT-KAEKQYVIA 607
            +G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G ++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y    ++ + F  T  ++K+  IA
Sbjct:   32 IGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRDEFTNTCPSDKEVEIA 243          
BLAST of DY260365 vs. ExPASy Swiss-Prot
Match: CLIC2_HUMAN (Chloride intracellular channel protein 2 OS=Homo sapiens GN=CLIC2 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.092e-13
Identity = 55/210 (26.19%), Postives = 99/210 (47.14%), Query Frame = 2
Query:   41 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYV 601
            +G+CPF QR  + L  K V +    ++++ KP+   +++P    P + ++ +   D   I   +E+     +YP  S      F  VG  +F  F  ++K+  K+ N   E++LL+E K LD++L T                    F+ G+++T  D SL PKL  ++VA + ++ + +P   + V  Y    +A E F  T  E + +
Sbjct:   27 IGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDLAPGTNPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESF-DVGCNLFAKFSAYIKNTQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEEPPVSRRLFLDGDQLTLADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHTCPEDKEI 235          
BLAST of DY260365 vs. ExPASy Swiss-Prot
Match: CLIC2_RAT (Chloride intracellular channel protein 2 OS=Rattus norvegicus GN=Clic2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.178e-13
Identity = 56/210 (26.67%), Postives = 97/210 (46.19%), Query Frame = 2
Query:   41 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYV 601
            +G+CPF QR  + L  K V +    I+ + KP+   +++P    P + ++ +   D   I   +E+     +YP  S      F  VG  +F  F  ++K+  K+ N   E++LL E K LD++L T                    F+ G+++T  D SL PKL  ++VA + ++ + +P   + V  Y    +A E F  T  E + +
Sbjct:   27 IGNCPFCQRLFMILWLKGVKFNVTTIDTARKPEELKDLAPGTNPPFLIYNKELKTDFIKIEEFLEKTLAPPRYPHLSPKYKESF-DVGCNLFAKFSAYIKNTQKEANKNFEKSLLREFKRLDDYLNTPLLDEIDPDSTEERTLSRRLFLDGDQLTLADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFAHTCPEDKEI 235          
BLAST of DY260365 vs. ExPASy Swiss-Prot
Match: CLIC3_HUMAN (Chloride intracellular channel protein 3 OS=Homo sapiens GN=CLIC3 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 7.080e-13
Identity = 57/222 (25.68%), Postives = 95/222 (42.79%), Query Frame = 2
Query:   41 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPPEFASV----------GSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKTH------GGP--------FIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYVIAGWVPKVN 628
            +G CP  QR  + L  K VP+    ++    P    + +P  ++P++ +D     D+  I   +EE         PP+F S+          G+ +F  F  F+K+  P  ++   Q LL  L  LD +L+        G P        F+ G+++T  D SL PKL+ +     HF+Q  +P  L  V  Y       + F+ T      ++A + P V+
Sbjct:   19 VGHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGSQLPILLYDSDAKTDTLQIEDFLEETL------GPPDFPSLAPRYRESNTAGNDVFHKFSAFIKNPVPAQDEALYQQLLRALARLDSYLRAPLEHELAGEPQLRESRRRFLDGDRLTLADCSLLPKLHIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAYRPAVH 234          
BLAST of DY260365 vs. ExPASy Swiss-Prot
Match: CLIC5_RAT (Chloride intracellular channel protein 5 OS=Rattus norvegicus GN=Clic5 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.208e-12
Identity = 57/218 (26.15%), Postives = 102/218 (46.79%), Query Frame = 2
Query:    2 EICVIAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHL----------KTHGG------PFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKA 586
            E+ V A +    I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D + I   +E     EKYP+ +  +  E  + G  IF  F  ++K+  +  N   E+ L + L+ LD++L           THG        F+ G+++T  D +L PKL+ +++  + ++ + +P  +  +  Y K  +A + F  T A
Sbjct:   17 ELFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAARH-RESNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALRKLDDYLNTPLPEEIDTNTHGDEKGSQRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCA 232          
BLAST of DY260365 vs. ExPASy Swiss-Prot
Match: CLIC5_MOUSE (Chloride intracellular channel protein 5 OS=Mus musculus GN=Clic5 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.208e-12
Identity = 57/218 (26.15%), Postives = 102/218 (46.79%), Query Frame = 2
Query:    2 EICVIAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHL----------KTHGG------PFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKA 586
            E+ V A +    I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D + I   +E     EKYP+ +  +  E  + G  IF  F  ++K+  +  N   E+ L + L+ LD++L           THG        F+ G+++T  D +L PKL+ +++  + ++ + +P  +  +  Y K  +A + F  T A
Sbjct:   17 ELFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKH-RESNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALRKLDDYLNSPLPEEIDTNTHGDEKGSQRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCA 232          
The following BLAST results are available for this feature:
BLAST of DY260365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CLIC4_RAT2.201e-1425.47Chloride intracellular channel protein 4 OS=Rattus... [more]
CLIC4_PONAB4.903e-1425.47Chloride intracellular channel protein 4 OS=Pongo ... [more]
CLIC4_MOUSE8.364e-1425.47Chloride intracellular channel protein 4 OS=Mus mu... [more]
CLIC4_BOVIN8.364e-1425.47Chloride intracellular channel protein 4 OS=Bos ta... [more]
CLIC4_HUMAN1.092e-1325.47Chloride intracellular channel protein 4 OS=Homo s... [more]
CLIC2_HUMAN1.092e-1326.19Chloride intracellular channel protein 2 OS=Homo s... [more]
CLIC2_RAT3.178e-1326.67Chloride intracellular channel protein 2 OS=Rattus... [more]
CLIC3_HUMAN7.080e-1325.68Chloride intracellular channel protein 3 OS=Homo s... [more]
CLIC5_RAT1.208e-1226.15Chloride intracellular channel protein 5 OS=Rattus... [more]
CLIC5_MOUSE1.208e-1226.15Chloride intracellular channel protein 5 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YE07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260365 ID=DY260365; Name=DY260365; organism=Citrus clementina; type=EST; length=1202bp
GGAGATTTGTGTGATAGCCGCTGTTGGCGCTCCTGATATTCTCGGGGACT
GCCCATTTTCCCAAAGAGCTTTGCTTACTTTGGAGGAAAAGAAAGTTCCA
TACAAGCGTCACCTCATCAATATCAGTGACAAGCCTCAATGGTTTTTGGA
GATAAGCCCAGAAGGGAAAGTACCTGTGGTAAAGTTTGATGACAAGTGGG
TGGCTGACTCTGATGTGATTGTTAGAATTATTGAGGAGAAGTATCCTGAG
CCTTCTCTTACTAATCCTCCTGAATTTGCCTCTGTTGGATCAAAGATATT
CCCATCTTTTGTCAATTTCTTGAAGAGCAAGGACCCAAATGATGGGACAG
AGCAAGCTTTGCTGGAGGAATTGAAAGCATTGGATGAGCATCTTAAGACT
CATGGAGGTCCATTCATTGCTGGAGAGAAGGTCACTGCTGTAGATTTGAG
CTTGGCACCAAAGCTGTACCACCTTCAGGTAGCTCTTGAACATTTCAAGC
AGTGGACTGTCCCTGAGAGCTTGGCTCATGTCCATGGGTACACGAAGAAG
CTTTTTGCTCTGGAATCCTTTCAGAAGACTAAGGCTGAAAAGCAATACGT
GATTGCAGGATGGGTGCCGAAGGTCAATGCATGAACCTAGTTCTAAGCTA
TGCGGTGTTTGAAATCTAACTAATGAAATGCCAGTAATGTATGTGTGAGA
CTTGGAGCATAATTTGAATGTTCCCTGGGGGTTTGTATCCTCCCACAAAG
GTGGCCACCATGATATTTGCCATTTGTTATAATGAAACCCCCCGGTTGAA
TGGCATTCACCCCTAATTCCCGGGATATCTCCACCGGTATTACATTGTTT
TAAAACCCTTGGCTTTTTCTCCAAAAAAAAAAACAAAAACCAAAAAACAC
CCCACTCTCCCGCCCACCGGTGGGCAGTTCACAAGACCACTCCCCCAATC
AATTGTCCCAACCAAACGCACCCAACACCACCCAAAAAAAACATACCAAC
TGCCACCCCTCGCTCATTCCTACTCAACGCATCAATGACTTGTCTCGCTC
CAATGATCACTCCTCACTACTCGATGATCTGACGTCTACACTCCCTGCCA
CTCGCCCATTCCTACCCACCGAATCGCATCCCTTAATCTCCTCTACCAAC
CACAACCTCCCTCAGCCACCCTCACCACCTGCACCCTCTCATTCCCATTT
AC
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