DY260375

Overview
NameDY260375
Unique NameDY260375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1226
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_METKA (30S ribosomal protein S3Ae OS=Methanopyrus kandleri GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.518e-18
Identity = 61/198 (30.81%), Postives = 99/198 (50.00%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIA----EMIGKEIEKATSSIYPLQNVFLRKVKTLKAPN 726
            WY I AP  F    VG+T            E +  RV E +LGD+L++    + K+  R  DV+G    + F G     D +RSLVR+  + I+  +DV T D + +R+  + FT R          A+TSQ R I ++M +++   A  CD    + + ++    E I ++I++A   IYP++   +RK + L+ PN
Sbjct:   11 WYTILAPDMFDNVEVGETPADDP-------EKVIGRVLETTLGDVLDDITKHHIKVFFRIYDVEGTTAYSKFEGHRLMRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAGLAFTTR---------RAKTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLSISEEESIPEQIKEAGRKIYPIRQAEIRKTEVLEEPN 192          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_PYRFU (30S ribosomal protein S3Ae OS=Pyrococcus furiosus GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.675e-17
Identity = 62/193 (32.12%), Postives = 92/193 (47.67%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAP 723
            WY I AP  F    VG T            E + +RV EV+L D+  +   ++ K+  +  DV+G+N  T F GM      +RSLVR+  T I+   ++ T D + LR+  +    R           QTSQ R I + M+EI+  +A   + K  V + +   I  EI K    IYPL+   +RK+K L+ P
Sbjct:   18 WYIIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDVTGDFTKSHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRKTTRIDGIFNITTKDGYKLRVMAMAIAMR---------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIKVLEEP 194          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_ARCFU (30S ribosomal protein S3Ae OS=Archaeoglobus fulgidus GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.857e-17
Identity = 59/195 (30.26%), Postives = 96/195 (49.23%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAP 723
            W+ + AP  F +  +G+T       +K+       R  E +L +L N+   ++ Y+K+  +   V G N  T FW    T + L SL R+  + IE  VDV T D + LR+  + FT R           +TSQ R I   MR+I+V +A+S +    +++ +   +  EI K    IYP++ V +RK++ L  P
Sbjct:   19 WFTLIAPEYFGMAELGET--PADDASKVVG-----RTVETTLAELTNDYSNQNTYKKLIFKVYRVAGDNAYTKFWRFELTREYLNSLTRRRTSKIEDIVDVTTADGYKLRVKSVVFTVR---------RCKTSQKRAIRAIMRQIVVEKASSLNFVQFLQECVLGKVPAEIYKNAKKIYPIRRVEIRKIELLAEP 197          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_PYRHO (30S ribosomal protein S3Ae OS=Pyrococcus horikoshii GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.873e-17
Identity = 62/193 (32.12%), Postives = 90/193 (46.63%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAP 723
            WY I AP  F    VG T            E + +RV EV+L D+  +    + K+  +  DV+G+N  T F GM      +RSLVR+  T I+   ++ T D + LR+  +    R           QTSQ R I + M+EI+  +A   + K  V + +   I  EI K    IYPL+   +RK+K L  P
Sbjct:   20 WYIIYAPDFFGGVEVGLTPADDP-------EKVMNRVVEVTLKDITGDFTKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYRLRVMAMAIAMR---------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEGKKIYPLKKAEIRKIKVLGEP 196          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_PYRAB (30S ribosomal protein S3Ae OS=Pyrococcus abyssi GN=rps3Ae PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.418e-16
Identity = 62/193 (32.12%), Postives = 90/193 (46.63%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAP 723
            WY I AP  F    VG T            E + +RV EV+L D+  +    + K+  +  DV+G+N  T F GM      +RSLVR+  T I+   ++ T D + LR+  +    R           QTSQ R I + M+EI+  +A   + K  V + +   I  EI K    IYPL+   +RK+K L  P
Sbjct:   19 WYVIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDITGDFLKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMVIAAR---------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIYPLKKAEIRKIKVLGEP 195          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_METBF (30S ribosomal protein S3Ae OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.159e-16
Identity = 60/198 (30.30%), Postives = 98/198 (49.49%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCY----AQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAP 723
            +WY+I+AP+      VG T+     G      G   R  E ++G+L N+      K+ LR  +V G    T+  G   TTD +RS+V++  + I+A +DVKT D + +R             VK TC+    A++SQI+ I   M  I+  +A+  D ++ +++ I   +   I +    IYPL+ V +RK +   AP
Sbjct:   17 EWYNIEAPAYLNRAIVGNTMA----GDPSLLVG---RNIETTVGELTNDMTKNNTKVILRINNVVGDVATTDLMGHELTTDYIRSIVKRQTSRIDANIDVKTKDGYIIR-------------VKPTCFTIKRARSSQIKAIREMMVNIVAKRASEADFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTQVEAAP 194          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_DESK1 (30S ribosomal protein S3Ae OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.200e-15
Identity = 58/196 (29.59%), Postives = 90/196 (45.92%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732
            WY++ AP+ F    +G T            E L  RV E +L D+  +    + K+  +   + G   LT F G     D +RSLVR+  + I+   D+ T D + LR+  +  T    N         TSQ + I R MRE +  +A+   L  LV++ ++  I  EI +    IYP++ V + K K L  P+ E
Sbjct:   18 WYEVVAPTSFGGITLGSTPADDP-------EKLIGRVIETTLYDITGDITQVHVKLYFQIISIDGNKALTRFKGHELARDYMRSLVRRKSSKIQGIFDINTKDGYVLRVTIVALTSYRCN---------TSQKKAIRRVMREYIFKKASELTLDELVQEIMSYKISNEIAELARKIYPIRRVEVYKTKLLLIPSPE 197          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_METAC (30S ribosomal protein S3Ae OS=Methanosarcina acetivorans GN=rps3Ae PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.568e-15
Identity = 61/198 (30.81%), Postives = 97/198 (48.99%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCY----AQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAP 723
            +WY+I+AP       VG T+     G      G   R  E ++G+L N+      K+ LR  +V G    T+  G   TTD +RS+V++  + I+A VDVKT D + +R             VK TC+    A++SQ++ I   M EI+  +AA  D ++ +++ I   +   I +    IYPL+ V +RK +    P
Sbjct:   17 EWYNIEAPVYLNRAIVGNTMA----GDPSLLVG---RNVETTVGELTNDMTKNNTKVILRINNVVGDIATTDLMGHELTTDYIRSIVKRQTSRIDANVDVKTKDGYVIR-------------VKPTCFTIKRARSSQMQAIREMMVEIVKKRAAESDFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTEVETIP 194          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_METMA (30S ribosomal protein S3Ae OS=Methanosarcina mazei GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.780e-15
Identity = 59/198 (29.80%), Postives = 98/198 (49.49%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCY----AQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAP 723
            +WY+I+AP+      VG T+     G      G   R  E ++G+L N+      K+ LR  +V G    T+  G   TTD +RS+V++  + I+A VDV+T D F +R             VK TC+    A++SQ++ I   M +I+  +A+  D ++ +++ I   +   I +    IYPL+ V +RK +    P
Sbjct:   17 EWYNIEAPAYLNRVIVGTTMA----GDPSLLVG---RNVETTVGELTNDMTKNNTKVILRVNNVVGDIATTDLMGHELTTDYVRSIVKRQTSRIDANVDVRTKDGFVIR-------------VKPTCFTIKRARSSQMQAIREMMVDIVKKRASETDFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTQVEAMP 194          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_PYRAE (30S ribosomal protein S3Ae OS=Pyrobaculum aerophilum GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.327e-14
Identity = 56/193 (29.02%), Postives = 92/193 (47.67%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAP 723
            W+ + APS      +G   +      +  ++ L  R  EVSL D+  +  H   K++ +   V+G   LT F G+  T D +RSLVRK  + + A  +VKT D   +R+  +G T        R   AQ S +R   +KM E +V +AA  D    +++ +   +  ++      I P++ V + K+K LK P
Sbjct:   27 WFSVYAPSY-----LGGVFLAEVPANE--AQKLLMRTLEVSLYDITKDISHLPIKLKFQIHRVEGLKALTRFKGLELTRDYIRSLVRKGTSKVTAITEVKTKDGMVMRIAVLGIT------THRIGTAQKSAMR---KKMIETLVKKAAELDSGQFLKEILEGTLAADLFIVAKKIAPMRKVEIAKIKVLKYP 203          
The following BLAST results are available for this feature:
BLAST of DY260375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
RS3A_METKA7.518e-1830.8130S ribosomal protein S3Ae OS=Methanopyrus kandler... [more]
RS3A_PYRFU1.675e-1732.1230S ribosomal protein S3Ae OS=Pyrococcus furiosus ... [more]
RS3A_ARCFU2.857e-1730.2630S ribosomal protein S3Ae OS=Archaeoglobus fulgid... [more]
RS3A_PYRHO4.873e-1732.1230S ribosomal protein S3Ae OS=Pyrococcus horikoshi... [more]
RS3A_PYRAB1.418e-1632.1230S ribosomal protein S3Ae OS=Pyrococcus abyssi GN... [more]
RS3A_METBF3.159e-1630.3030S ribosomal protein S3Ae OS=Methanosarcina barke... [more]
RS3A_DESK11.200e-1529.5930S ribosomal protein S3Ae OS=Desulfurococcus kamc... [more]
RS3A_METAC1.568e-1530.8130S ribosomal protein S3Ae OS=Methanosarcina aceti... [more]
RS3A_METMA7.780e-1529.8030S ribosomal protein S3Ae OS=Methanosarcina mazei... [more]
RS3A_PYRAE1.327e-1429.0230S ribosomal protein S3Ae OS=Pyrobaculum aerophil... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YE20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260375 ID=DY260375; Name=DY260375; organism=Citrus clementina; type=EST; length=1226bp
AACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTCTCTTGAGCAGCAG
CTGCACAAACATGGCTGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGA
AAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTAT
GATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCT
TGTTACCCGGACTCAGGGTACCAAGATTGCATCAGAAGGTCTCAAGCACA
GAGTGTTTGAGGTATCACTAGGTGATCTTCTCAATGAAGAAGAGCATGCT
TACAGGAAGATCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTTTT
GACTAACTTCTGGGGCATGAATTTCACTACAGACAAGCTGAGGTCTTTGG
TTAGGAAGTGGCATACCTTGATTGAAGCTTACGTGGATGTCAAGACCACT
GATAACTTCACATTGAGGTTGTTCTGCATTGGATTCACCAAGAGACTTCC
AAACCAGGTTAAGAGGACTTGCTACGCACAGACCAGCCAGATTAGACAGA
TTCCCCGCAAGATGAGGGAGATCATGGTTGCTCAGGCAGCATCTTGTGAT
CTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAATGATTGGAAAAGAGAT
TGAAAAGGCAACGTCAAGCATATACCCCTTACAAAATGTGTTCCTTCGCA
AAGTGAAAACCCTGAAAGCTCCCAATTTTGAATCTTTGGAAAATTGAGGG
AAGTTCCCCGGCAATTACCCCCGAAAATGTTGGGTGAGAAGGGGGATAGG
CCCACCGAAGAAGCCCATGCCGGAAGCCCCACCCGAAACTGCATGGAAAC
CCTCGAACGGGAATAACAAAAAATTTTTCCGCGTTTGATTTTTCCAACCT
AATCCCACCCGCGGGCTGTTTCTTGCACCCTTAAATCCCCCCCCACTCGC
ACCTCGCATCTCACCTCTATCATCAACTCTCCCCACATGCCCCCGCACAA
ACAGCTAACGGTCCACACTCACCAACAGACACCAAAGCACACCCTTATCA
CTCTGCCTGATATCGTCACTGAACAATGAAATAACCCCTACTTGTCACAC
ACTATTTGCTCTCTTACACCCAATACAAACTACTTACTTTACATCGAACG
TATCCGAAATTTCCAAACATCACTACCACTCAGATCTTCACTCTCAATTA
ACTACGTTTCACTGCAAACATCTGCC
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