DY260375

Overview
NameDY260375
Unique NameDY260375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1226
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_ENTBH (40S ribosomal protein S1 OS=Enterocytozoon bieneusi (strain H348) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.327e-14
Identity = 56/187 (29.95%), Postives = 96/187 (51.34%), Query Frame = 1
Query:  172 FRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEE----HAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRL-PNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLK 717
            F + N G T   + +  +  +  L  R F V+ GDL   +     ++ R  + +   V G N  + F GM  + +K+  ++RKWHTLIEA + + T D  T R+F    TK+  P+ +K   YA+ S+I+ I +++ E  +      +++ LV+    E + KE E   + IYP+  + + KVK +K
Sbjct:   41 FPITNHGTTSHPKMRSKQDLTPFLVGRTFSVNQGDLECADPMNAVNSPRYFKFKVNAVCGNNCNSVFNGMEVSREKITGMIRKWHTLIEANIPITTKDGSTWRVFVNAVTKKKNPDSLKH--YAKASEIKIIRKRIVETTLEHLDGIEVEKLVKVLSTEGLAKEFETRCNEIYPIFAMII-KVKPIK 224          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_THEON (30S ribosomal protein S3Ae OS=Thermococcus onnurineus (strain NA1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.264e-14
Identity = 55/194 (28.35%), Postives = 88/194 (45.36%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAP 723
            +WY + AP  F  + +G T            E +  RV E +L DL  +      K+  +  DV+G+N  T F G   +   +RSLVR+  T ++   ++ T D + LR+  +    R           QTSQ R I   MR+I+  +A   + K  + + +   +  EI K    IYP++   +RK+K L  P
Sbjct:   21 EWYVVYAPDFFGNKEIGLTPADDP-------EKVIGRVIETTLKDLTGDFTKGQVKLYFQIYDVKGQNAYTKFKGHTLSRSYIRSLVRRRTTRVDGIFNITTKDGYKLRVMGMVIAYR---------RIQTSQERAIREIMRDIIYKKAEELNYKDFILEAVTGKMATEIAKEARKIYPIKRAEIRKIKVLAEP 198          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_PYRIL (30S ribosomal protein S3Ae OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.264e-14
Identity = 54/193 (27.98%), Postives = 95/193 (49.22%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAP 723
            W+ + APS      +G   +     ++   + L  R  EVSL D+  +  H   K+R +   V G   +T F G+  T D +RSLVRK  + + A V+VKT D + +R+  +  T        R   AQ S +R   ++M +++  +A+  D+   +++ +  ++  ++  A   I PL+ V + K+K LK P
Sbjct:   27 WFSVYAPSY-----LGGVFLAEVPASE--PQKLLLRTLEVSLFDITKDLSHLPIKLRFQIHKVDGLKAITRFKGLELTRDYIRSLVRKGTSKVSAIVEVKTKDGWVMRIAVLAIT------THRIGSAQKSAMR---KRMFDVLTRKASEMDIGQFLKEVLEGLLTADLFVAGKKIAPLRKVEIAKIKVLKYP 203          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_THESM (30S ribosomal protein S3Ae OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.043e-14
Identity = 54/194 (27.84%), Postives = 86/194 (44.33%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAP 723
            DWY + AP  F    +G T            E +K R+ E +L D+  +    + K+  R  DV+G+N  T F G       +RSLVR+  T I+   +V T D + LR+  +    R           Q+SQ R +   M +++  +A        V + +   +G E+ +    IYPL+   +RK+K L  P
Sbjct:   21 DWYIVYAPEFFGNVEIGLTPADEP-------EKVKGRIIETTLRDVTGDFTKGHVKLYFRIHDVKGQNAYTKFKGHKLARSYIRSLVRRRTTRIDGIFNVTTKDGYKLRVMGMVIAIR---------RIQSSQERAVREVMEDLIRKKAEELTFTEFVLEAVNGKMGAELAREAKKIYPLKRAEIRKIKVLAEP 198          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_THEGJ (30S ribosomal protein S3Ae OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.043e-14
Identity = 54/194 (27.84%), Postives = 88/194 (45.36%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAP 723
            +W+ + AP  F  + +G T            E +  RV E +L DL  +    + K+  +  DV+G+N  T F G       +RSLVR+  T ++   ++ T D + LR+  +    R           QTSQ R I R +++I+  +A   +    V + +   I  EI K    IYP++   +RK+K L  P
Sbjct:   21 EWFVVYAPDFFGSKEIGLTPADEP-------EKVIGRVVETTLKDLTGDFTKGHVKLYFQVYDVKGQNAYTKFKGHTLARSYIRSLVRRRTTRVDGIFNITTKDGYKLRVMGMVIAYR---------RIQTSQERAIRRIIQDIIYKKAEELNFADFVLQSVNGQIASEIAKEARKIYPIKRAEIRKIKVLAEP 198          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_PYRKO (30S ribosomal protein S3Ae OS=Pyrococcus kodakaraensis GN=rps3ae PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.043e-14
Identity = 54/195 (27.69%), Postives = 89/195 (45.64%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPN 726
            +WY + AP  F  + +G T            E +  RV E +L DL  +    + K+  +  DV+G+N  T F G       +RSLVR+  T ++   ++ T D + LR+  +    R           QTSQ R I + +++I+  +A   +    V + +   I  EI K    IYP++   +RK+K L  P+
Sbjct:   21 EWYIVYAPDFFGSKEIGLTPADDP-------EKVIGRVIETTLKDLTGDFTKGHVKLYFQVYDVKGQNAYTKFKGHTLARSYIRSLVRRRTTRVDGIFNITTKDGYKLRVMGMVIAYR---------RIQTSQERAIRKIIQDIIYKKAEELNFADFVLQSVNGQIASEIAKEARKIYPIKRAEVRKIKVLAEPS 199          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_THENV (30S ribosomal protein S3Ae OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.586e-14
Identity = 57/193 (29.53%), Postives = 92/193 (47.67%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAP 723
            WY + APS      +G   +      +  ++ L  R  EVSL D+  +  H   K+R +   V G    T F G+  T D +RSLVRK  + + A VDVKT D + +R+  +  T        R   AQ S IR   +++ E +  +A+  D+   +++ +   +  E+  A   I PL+ V + K+K L+ P
Sbjct:   27 WYTVYAPSY-----LGGVALAEVPAAE--AQKLLLRTIEVSLYDITKDISHLPIKLRFQIHRVDGLKAATRFKGLELTRDYVRSLVRKGTSKVSAIVDVKTKDGWVMRISILAVT------AHRIGTAQKSAIR---KRVAEALSRKASDSDVGQFLKEVLEGSLAAELFVAGKKIAPLRKVEVAKIKVLRYP 203          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_PYRCJ (30S ribosomal protein S3Ae OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.123e-13
Identity = 50/164 (30.49%), Postives = 83/164 (50.61%), Query Frame = 1
Query:  232 SEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAP 723
            ++ L  R  EV+L D+  +  H   K+R +   V G N  T F G+  T D LRSL+R+  + I A  DVKT D + +R+  +G T        R   AQ S IR   ++  E++  +AA  D+   +++ +   +  ++  A   I P++ V + K+K L+ P
Sbjct:   49 AQKLVKRTLEVTLYDITKDISHLPIKLRFQIHRVDGLNASTRFKGLELTRDYLRSLIRRGTSKIMAITDVKTKDGWVMRVAVLGVT------THRVGTAQKSAIR---KRFIEVVTKKAAEADIGQFLKEVLEGTLAADLFIAGKKIAPMRKVEVAKIKVLRYP 203          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_METTH (30S ribosomal protein S3Ae OS=Methanobacterium thermoautotrophicum GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.269e-13
Identity = 57/194 (29.38%), Postives = 93/194 (47.94%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQ-IPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAP 723
            WY IK+P  F    +G T       ++     LK RV E ++ +L  +    Y K++ + + V G    T F G   TTD +RS++R+  + ++A V V+T D + L++  +  T      ++R   +Q   +RQ I   +REI    A+    + LVE  +   I  EI      IYPL+ V + K + L+ P
Sbjct:   18 WYVIKSPKLFGENEIGTT------PSRDPDFLLKRRV-EATMRELTGDFSKQYVKLKFQIDSVAGSEATTRFIGHQVTTDYVRSMIRRGTSRVDAPVIVETKDGYKLKVHPLAIT------IRRAKSSQQKYMRQSIEEHLREI----ASEKTFEELVEGIVTGKIASEIYHQAKKIYPLKRVEIIKSRVLEEP 194          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_SULTO (30S ribosomal protein S3Ae OS=Sulfolobus tokodaii GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.269e-13
Identity = 57/193 (29.53%), Postives = 90/193 (46.63%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAP 723
            W+ I AP  F     G+ ++  T     A++ L  +V E +L DL  +    Y  +  R   V+G  +LT F G   + D +RSLVR+  + I+A  DV T D + LR+  +  T         T  A  SQ  +I + +  I+  +A+       V+  +   +  +I +    IYPL+ V + K K LKAP
Sbjct:   16 WFTIVAPKTF-----GEVVLGTTPAFD-ANQALNRKV-ETTLYDLTGDYSLVYVHLYFRVIGVEGDRLLTRFAGHELSRDYIRSLVRRKSSKIDAITDVTTKDGYVLRVKGLALT---------TYRAHRSQKTEIRKIIWNILSTRASETTFDEFVQDIVFGKLSNDIFQQAKKIYPLRKVEVEKTKLLKAP 192          
The following BLAST results are available for this feature:
BLAST of DY260375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
RS3A_ENTBH1.327e-1429.9540S ribosomal protein S1 OS=Enterocytozoon bieneus... [more]
RS3A_THEON2.264e-1428.3530S ribosomal protein S3Ae OS=Thermococcus onnurin... [more]
RS3A_PYRIL2.264e-1427.9830S ribosomal protein S3Ae OS=Pyrobaculum islandic... [more]
RS3A_THESM5.043e-1427.8430S ribosomal protein S3Ae OS=Thermococcus sibiric... [more]
RS3A_THEGJ5.043e-1427.8430S ribosomal protein S3Ae OS=Thermococcus gammato... [more]
RS3A_PYRKO5.043e-1427.6930S ribosomal protein S3Ae OS=Pyrococcus kodakarae... [more]
RS3A_THENV6.586e-1429.5330S ribosomal protein S3Ae OS=Thermoproteus neutro... [more]
RS3A_PYRCJ1.123e-1330.4930S ribosomal protein S3Ae OS=Pyrobaculum calidifo... [more]
RS3A_METTH3.269e-1329.3830S ribosomal protein S3Ae OS=Methanobacterium the... [more]
RS3A_SULTO4.269e-1329.5330S ribosomal protein S3Ae OS=Sulfolobus tokodaii ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YE20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260375 ID=DY260375; Name=DY260375; organism=Citrus clementina; type=EST; length=1226bp
AACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTCTCTTGAGCAGCAG
CTGCACAAACATGGCTGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGA
AAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTAT
GATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCT
TGTTACCCGGACTCAGGGTACCAAGATTGCATCAGAAGGTCTCAAGCACA
GAGTGTTTGAGGTATCACTAGGTGATCTTCTCAATGAAGAAGAGCATGCT
TACAGGAAGATCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTTTT
GACTAACTTCTGGGGCATGAATTTCACTACAGACAAGCTGAGGTCTTTGG
TTAGGAAGTGGCATACCTTGATTGAAGCTTACGTGGATGTCAAGACCACT
GATAACTTCACATTGAGGTTGTTCTGCATTGGATTCACCAAGAGACTTCC
AAACCAGGTTAAGAGGACTTGCTACGCACAGACCAGCCAGATTAGACAGA
TTCCCCGCAAGATGAGGGAGATCATGGTTGCTCAGGCAGCATCTTGTGAT
CTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAATGATTGGAAAAGAGAT
TGAAAAGGCAACGTCAAGCATATACCCCTTACAAAATGTGTTCCTTCGCA
AAGTGAAAACCCTGAAAGCTCCCAATTTTGAATCTTTGGAAAATTGAGGG
AAGTTCCCCGGCAATTACCCCCGAAAATGTTGGGTGAGAAGGGGGATAGG
CCCACCGAAGAAGCCCATGCCGGAAGCCCCACCCGAAACTGCATGGAAAC
CCTCGAACGGGAATAACAAAAAATTTTTCCGCGTTTGATTTTTCCAACCT
AATCCCACCCGCGGGCTGTTTCTTGCACCCTTAAATCCCCCCCCACTCGC
ACCTCGCATCTCACCTCTATCATCAACTCTCCCCACATGCCCCCGCACAA
ACAGCTAACGGTCCACACTCACCAACAGACACCAAAGCACACCCTTATCA
CTCTGCCTGATATCGTCACTGAACAATGAAATAACCCCTACTTGTCACAC
ACTATTTGCTCTCTTACACCCAATACAAACTACTTACTTTACATCGAACG
TATCCGAAATTTCCAAACATCACTACCACTCAGATCTTCACTCTCAATTA
ACTACGTTTCACTGCAAACATCTGCC
back to top