DY260375

Overview
NameDY260375
Unique NameDY260375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1226
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_METB6 (30S ribosomal protein S3Ae OS=Methanoregula boonei (strain 6A8) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.576e-13
Identity = 58/196 (29.59%), Postives = 98/196 (50.00%), Query Frame = 1
Query:  157 KAPSCFRVR---NVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLF--CIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFL--RKVKTLKAP 723
            KA S F+V    N+GK  +  T  +++  E +K R+ + +LG++ N+    + K+  +  +V G    T F G   T D LRSLV++  + I+ +V V T DN  +RL   C  F +           A  +Q   +   +   +VAQA + DL +LV   ++  I K++ K   ++YP + V +   KV+ + AP
Sbjct:   15 KAKSWFKVYTPDNLGKAYIGDTIASEV--ETVKGRIMQATLGEITNDYAKQHIKMSFKIAEVTGDAAYTEFVGHEVTRDYLRSLVKRRSSRIDCHVQVVTKDNKKVRLTISCYTFAR-----------ANIAQEHALRNAITAGLVAQAQAWDLNTLVNGVVSGEISKDLFKLVKTLYPTRRVEIIKSKVEQVAAP 197          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_HALMA (30S ribosomal protein S3Ae OS=Haloarcula marismortui GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.622e-12
Identity = 53/192 (27.60%), Postives = 88/192 (45.83%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKA 720
            WY ++AP  F    +GKT            + +  R  E +LG+L N+      K+  +  +V   +  T F     T D LRSLVR+  + +EAY+ V TTD++ +++  +  T         T  A  SQ + I R M +++   A     + L++  +   +   I      IYPL+ V ++K  TL+A
Sbjct:   15 WYTVQAPEQFDREVLGKTPAEEP-------DKVLGRTIETTLGELTNDASENNTKLTFKINEVASDSAYTEFIRHELTRDYLRSLVRRGSSKVEAYITVLTTDDYRVQIQPVAVT---------TKKADASQEKAIRRTMIDLVRETAEDHTFEQLIDSVVEGRLSSAIYGEAKDIYPLRRVEIKKT-TLEA 189          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_PYRAR (30S ribosomal protein S3Ae OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.119e-12
Identity = 53/193 (27.46%), Postives = 91/193 (47.15%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAP 723
            W+ + AP       +G   +     T+  +E L  R  EVSL D+  +  H   K++ +   V+G   LT F G+  + D ++SLVRK  + + A  +VKT D   +R+  +  T        R   AQ S +R   +K+ E ++ +A+  D    +++ +   +  ++  A   I PL+ V   K+K LK P
Sbjct:   27 WFAVHAPPY-----LGGVFLAEVPATE--AEKLLMRTLEVSLYDITKDISHLPVKLKFQIHRVEGLRALTRFKGLELSRDYVKSLVRKGTSKVVAITEVKTKDGMDMRVSVMVIT------AHRLGTAQKSAVR---KKITETLLKKASEMDTSQFLKEVLEGTLAADLFIAAKKIAPLRKVEFAKIKVLKYP 203          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_SULIY (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.614e-12
Identity = 57/206 (27.67%), Postives = 89/206 (43.20%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFESLEN*GK 753
            WY I AP  F   ++G T    VT+T G ++          E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   I + + E +  +A+        ++ +   +  EI +AT  IYPL+   + K K LK P     EN GK
Sbjct:   17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKVLKVP-----ENLGK 198          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_SULIN (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.614e-12
Identity = 57/206 (27.67%), Postives = 89/206 (43.20%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFESLEN*GK 753
            WY I AP  F   ++G T    VT+T G ++          E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   I + + E +  +A+        ++ +   +  EI +AT  IYPL+   + K K LK P     EN GK
Sbjct:   17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKVLKVP-----ENLGK 198          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_SULIM (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.614e-12
Identity = 57/206 (27.67%), Postives = 89/206 (43.20%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFESLEN*GK 753
            WY I AP  F   ++G T    VT+T G ++          E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   I + + E +  +A+        ++ +   +  EI +AT  IYPL+   + K K LK P     EN GK
Sbjct:   17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKVLKVP-----ENLGK 198          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_SULIL (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.614e-12
Identity = 57/206 (27.67%), Postives = 89/206 (43.20%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFESLEN*GK 753
            WY I AP  F   ++G T    VT+T G ++          E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   I + + E +  +A+        ++ +   +  EI +AT  IYPL+   + K K LK P     EN GK
Sbjct:   17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKVLKVP-----ENLGK 198          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_SULIK (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.614e-12
Identity = 57/206 (27.67%), Postives = 89/206 (43.20%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFESLEN*GK 753
            WY I AP  F   ++G T    VT+T G ++          E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   I + + E +  +A+        ++ +   +  EI +AT  IYPL+   + K K LK P     EN GK
Sbjct:   17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKVLKVP-----ENLGK 198          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_SULIA (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain M.16.27) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.614e-12
Identity = 57/206 (27.67%), Postives = 89/206 (43.20%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFESLEN*GK 753
            WY I AP  F   ++G T    VT+T G ++          E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   I + + E +  +A+        ++ +   +  EI +AT  IYPL+   + K K LK P     EN GK
Sbjct:   17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKVLKVP-----ENLGK 198          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_SULAC (30S ribosomal protein S3Ae OS=Sulfolobus acidocaldarius GN=rps3ae PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.165e-12
Identity = 62/197 (31.47%), Postives = 91/197 (46.19%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEE----HAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAP 723
            WY I AP  F     G+ L+  T    I ++ L  ++ EV+L DL  +      H Y KI     ++ G  + T F+G   + D +RSLVR+  + I A VDV T D + LR+  +  T         T  A  SQ   I + + +I   +A   D    V+  I   +  +I +    IYPL+ V + K K LKAP
Sbjct:   18 WYVITAPKVF-----GEALLGSTPAYDI-NKALSRKI-EVTLYDLTGDYNLVYIHLYFKI---LGNISGDKLSTIFYGHELSRDYIRSLVRRKSSKINAVVDVTTKDGYMLRVKGLVLT---------TYRAHISQKTAIRKVISDITRKKAEESDFDQFVQDVIFGKLSNDIFQEAKKIYPLRKVEIEKTKLLKAP 195          
The following BLAST results are available for this feature:
BLAST of DY260375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
RS3A_METB65.576e-1329.5930S ribosomal protein S3Ae OS=Methanoregula boonei... [more]
RS3A_HALMA1.622e-1227.6030S ribosomal protein S3Ae OS=Haloarcula marismort... [more]
RS3A_PYRAR2.119e-1227.4630S ribosomal protein S3Ae OS=Pyrobaculum arsenati... [more]
RS3A_SULIY3.614e-1227.6730S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_SULIN3.614e-1227.6730S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_SULIM3.614e-1227.6730S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_SULIL3.614e-1227.6730S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_SULIK3.614e-1227.6730S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_SULIA3.614e-1227.6730S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_SULAC6.165e-1231.4730S ribosomal protein S3Ae OS=Sulfolobus acidocald... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YE20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260375 ID=DY260375; Name=DY260375; organism=Citrus clementina; type=EST; length=1226bp
AACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTCTCTTGAGCAGCAG
CTGCACAAACATGGCTGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGA
AAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTAT
GATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCT
TGTTACCCGGACTCAGGGTACCAAGATTGCATCAGAAGGTCTCAAGCACA
GAGTGTTTGAGGTATCACTAGGTGATCTTCTCAATGAAGAAGAGCATGCT
TACAGGAAGATCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTTTT
GACTAACTTCTGGGGCATGAATTTCACTACAGACAAGCTGAGGTCTTTGG
TTAGGAAGTGGCATACCTTGATTGAAGCTTACGTGGATGTCAAGACCACT
GATAACTTCACATTGAGGTTGTTCTGCATTGGATTCACCAAGAGACTTCC
AAACCAGGTTAAGAGGACTTGCTACGCACAGACCAGCCAGATTAGACAGA
TTCCCCGCAAGATGAGGGAGATCATGGTTGCTCAGGCAGCATCTTGTGAT
CTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAATGATTGGAAAAGAGAT
TGAAAAGGCAACGTCAAGCATATACCCCTTACAAAATGTGTTCCTTCGCA
AAGTGAAAACCCTGAAAGCTCCCAATTTTGAATCTTTGGAAAATTGAGGG
AAGTTCCCCGGCAATTACCCCCGAAAATGTTGGGTGAGAAGGGGGATAGG
CCCACCGAAGAAGCCCATGCCGGAAGCCCCACCCGAAACTGCATGGAAAC
CCTCGAACGGGAATAACAAAAAATTTTTCCGCGTTTGATTTTTCCAACCT
AATCCCACCCGCGGGCTGTTTCTTGCACCCTTAAATCCCCCCCCACTCGC
ACCTCGCATCTCACCTCTATCATCAACTCTCCCCACATGCCCCCGCACAA
ACAGCTAACGGTCCACACTCACCAACAGACACCAAAGCACACCCTTATCA
CTCTGCCTGATATCGTCACTGAACAATGAAATAACCCCTACTTGTCACAC
ACTATTTGCTCTCTTACACCCAATACAAACTACTTACTTTACATCGAACG
TATCCGAAATTTCCAAACATCACTACCACTCAGATCTTCACTCTCAATTA
ACTACGTTTCACTGCAAACATCTGCC
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