DY260375

Overview
NameDY260375
Unique NameDY260375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1226
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15237 contig Ccv1_Contig15237:14..1239. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_NATPD (30S ribosomal protein S3Ae OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.165e-12
Identity = 49/193 (25.39%), Postives = 86/193 (44.56%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAP 723
            WY + AP  F    +G+T            E +  R  + +LG+L N+      K+  +  DV      T+F     T D LRSL R+  + ++A+V V TTD++ +++  + +T         T  A  SQ + I   M +++   AA      L++  +   +   I     +IYPL+ V ++K +   +P
Sbjct:   15 WYTVMAPEIFDRAELGETPADEP-------EQVYDRTVQTTLGELQNDPSENNTKLTFQISDVGSDTAYTDFVQHELTRDYLRSLTRRGTSKVDAFVTVLTTDDYRVQVQPVAYT---------TKSADRSQEQAIRSTMVDLVEESAADNTFADLIDSIVEGRLSSAIYNEAKTIYPLRRVEIQKTRLQASP 191          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_HALWD (30S ribosomal protein S3Ae OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.051e-12
Identity = 55/192 (28.65%), Postives = 87/192 (45.31%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKA 720
            WY I AP  F    +G T            E +  R  EV+LGD+  ++     K+  +  DV      T F       D LRSL+R+  + I+A + V+TTD++ ++L  + FT         T  A  SQ + I R M +++   A       L++  I   +   I     +IYPL+ V ++K+ TL+A
Sbjct:   15 WYSIIAPEQFDRSELGSTFADDP-------EKIHGRTLEVTLGDITGDQGENNTKLTFKVNDVTSDAAYTEFIKHELARDYLRSLIRRGASKIDAAITVRTTDDYRVQLQPVAFT---------TKKADRSQEQAIRRVMIDLVEDAADERTFADLIDAAIEGQLSSAIYGEAKTIYPLRRVEVKKL-TLEA 189          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_METVS (30S ribosomal protein S3Ae OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.059e-11
Identity = 50/191 (26.18%), Postives = 85/191 (44.50%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLK 717
            WY+I  P  F    +G+T              L  R+ E+SL DL NE      ++  + + V G N +T F G + T + L+S +R+  + I   +DV+T D F +R+  +  T      V+   Y +T    +I  KM +I+   A        V   +   +G +I      ++PL+ V + K + L+
Sbjct:   24 WYNIYTPQSFGGDVIGQTPANDPSA-------LMGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNAITQFVGHDTTREYLKSQIRRRRSKINVIIDVRTKDGFKVRVKALVLT-----AVRARDYHKT----EIRVKMEQIIKEMANETAFAEFVHAMVMGGVGSKIYSECKKMFPLKRVEIFKSEVLE 198          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_METS3 (30S ribosomal protein S3Ae OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.059e-11
Identity = 51/190 (26.84%), Postives = 88/190 (46.32%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTL 714
            WY IK P  F  + +G+T            + L  R  EV++ +L  +    Y K+R   ++V G    T F G   TTD +RS++R+  + I+A   VKT D+  ++L  +  T R          A++SQ + + + + +++   AA      L++  +   +  E+      IYPL+ V + K K L
Sbjct:   19 WYTIKTPVNFEDKEIGETPARDP-------DYLIGRGVEVTMRELSGDFSKQYIKLRFEIDNVAGDVANTKFTGHKTTTDYVRSMIRRGTSRIDASSVVKTKDDRKVKLHVLAVTTR---------RAKSSQQKYMRQVINDLLAETAAEKSFDELIKLVVNGKLASEVYHNAKKIYPLKRVEIIKSKVL 192          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_SULSO (30S ribosomal protein S3Ae OS=Sulfolobus solfataricus GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.219e-11
Identity = 54/206 (26.21%), Postives = 87/206 (42.23%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFESLEN*GK 753
            WY +  P  F   ++G T    +T+T G ++          E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + I +  DV T D         G+  R+   V  T     SQ   I + + E +  +A+        ++ +   +  EI +A   IYPL+   + K K LK P     EN GK
Sbjct:   17 WYSVITPKAFGEVSLGSTPAYDITQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIIGNEGDRLITRFVGHELSRDYLRSLIRRKSSKINSIFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETVSKKASELSFDDFTQEVVFGRLANEIFEAAKKIYPLRKAEIEKTKVLKVP-----ENLGK 198          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_METM7 (30S ribosomal protein S3Ae OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.816e-11
Identity = 53/191 (27.75%), Postives = 85/191 (44.50%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLK 717
            WYDI  P  F     G  ++ +T     A+  L  R+ E+SL DL NE      ++  + + V G N  + F G + T + L+S VR+  + I A VDV+T D F LR+  +  T            A+     +I  KM +I+   A        V   +   +G +I      ++PL+ V + K + L+
Sbjct:   24 WYDIYTPQSF-----GGDVIGQTPANDPAT--LIGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVDVRTKDGFKLRVKALVLT---------AVRARDHHKTEIRVKMEQIIKDMAKETAFAEFVHAMLMGGLGSKIYGDCKKMFPLKRVEIFKSEVLE 198          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_METM6 (30S ribosomal protein S3Ae OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.816e-11
Identity = 53/191 (27.75%), Postives = 85/191 (44.50%), Query Frame = 1
Query:  145 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLK 717
            WYDI  P  F     G  ++ +T     A+  L  R+ E+SL DL NE      ++  + + V G N  + F G + T + L+S VR+  + I A VDV+T D F LR+  +  T            A+     +I  KM +I+   A        V   +   +G +I      ++PL+ V + K + L+
Sbjct:   24 WYDIYTPQSF-----GGDVIGQTPANDPAT--LIGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVDVRTKDGFKLRVKALVLT---------AVRARDHHKTEIRVKMEQIIKDMAKETAFAEFVHAMLMGGLGSKIYGDCKKMFPLKRVEIFKSEVLE 198          
The following BLAST results are available for this feature:
BLAST of DY260375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
RS3A_NATPD6.165e-1225.3930S ribosomal protein S3Ae OS=Natronomonas pharaon... [more]
RS3A_HALWD8.051e-1228.6530S ribosomal protein S3Ae OS=Haloquadratum walsby... [more]
RS3A_METVS3.059e-1126.1830S ribosomal protein S3Ae OS=Methanococcus vannie... [more]
RS3A_METS33.059e-1126.8430S ribosomal protein S3Ae OS=Methanobrevibacter s... [more]
RS3A_SULSO5.219e-1126.2130S ribosomal protein S3Ae OS=Sulfolobus solfatari... [more]
RS3A_METM76.816e-1127.7530S ribosomal protein S3Ae OS=Methanococcus maripa... [more]
RS3A_METM66.816e-1127.7530S ribosomal protein S3Ae OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YE20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260375 ID=DY260375; Name=DY260375; organism=Citrus clementina; type=EST; length=1226bp
AACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTCTCTTGAGCAGCAG
CTGCACAAACATGGCTGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGA
AAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTAT
GATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCT
TGTTACCCGGACTCAGGGTACCAAGATTGCATCAGAAGGTCTCAAGCACA
GAGTGTTTGAGGTATCACTAGGTGATCTTCTCAATGAAGAAGAGCATGCT
TACAGGAAGATCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTTTT
GACTAACTTCTGGGGCATGAATTTCACTACAGACAAGCTGAGGTCTTTGG
TTAGGAAGTGGCATACCTTGATTGAAGCTTACGTGGATGTCAAGACCACT
GATAACTTCACATTGAGGTTGTTCTGCATTGGATTCACCAAGAGACTTCC
AAACCAGGTTAAGAGGACTTGCTACGCACAGACCAGCCAGATTAGACAGA
TTCCCCGCAAGATGAGGGAGATCATGGTTGCTCAGGCAGCATCTTGTGAT
CTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAATGATTGGAAAAGAGAT
TGAAAAGGCAACGTCAAGCATATACCCCTTACAAAATGTGTTCCTTCGCA
AAGTGAAAACCCTGAAAGCTCCCAATTTTGAATCTTTGGAAAATTGAGGG
AAGTTCCCCGGCAATTACCCCCGAAAATGTTGGGTGAGAAGGGGGATAGG
CCCACCGAAGAAGCCCATGCCGGAAGCCCCACCCGAAACTGCATGGAAAC
CCTCGAACGGGAATAACAAAAAATTTTTCCGCGTTTGATTTTTCCAACCT
AATCCCACCCGCGGGCTGTTTCTTGCACCCTTAAATCCCCCCCCACTCGC
ACCTCGCATCTCACCTCTATCATCAACTCTCCCCACATGCCCCCGCACAA
ACAGCTAACGGTCCACACTCACCAACAGACACCAAAGCACACCCTTATCA
CTCTGCCTGATATCGTCACTGAACAATGAAATAACCCCTACTTGTCACAC
ACTATTTGCTCTCTTACACCCAATACAAACTACTTACTTTACATCGAACG
TATCCGAAATTTCCAAACATCACTACCACTCAGATCTTCACTCTCAATTA
ACTACGTTTCACTGCAAACATCTGCC
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