DY260375

Overview
NameDY260375
Unique NameDY260375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1226
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_PARBA (40S ribosomal protein S1 OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.826e-64
Identity = 125/197 (63.45%), Postives = 155/197 (78.68%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732
            D Y +KAPS F +R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+T YAQ+SQIR I +KM EI+  +A +  L  L  K I E+IG+EIEKAT  IYPLQNV +RKVK LK+P F+
Sbjct:   28 DEYSVKAPSTFAIRDVGKTLVNRTTGLKNANDALKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAQSSQIRAIRKKMVEIIQREAGTRSLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFD 223          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_CANTT (40S ribosomal protein S1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.826e-64
Identity = 117/197 (59.39%), Postives = 155/197 (78.68%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT D++ LR+F I FTKR  NQ+K+T YAQ+S++R++ +KM EIM  + ++C L  L  K I E+IG+EIEK+T +I+PLQNV +RKVK LK P F+
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFD 224          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_TRIIF (40S ribosomal protein S3a OS=Triatoma infestans PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 5.314e-64
Identity = 123/199 (61.81%), Postives = 151/199 (75.88%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732
            DWYD+KAPS F  R +GKTLV RTQGTKIASEGLK RVFEVSL DL N+   E +YRK RL AEDVQ +NVLTNF GM+ TTDKLRS+V+KW TLIEA VDV+TTD + LR+FCIGFT +     ++TCYAQ +Q+RQI RKM + + +  ++ DL+ +V K I + I K+IEKA   IYPL +V++RKVK LK P FE
Sbjct:   29 DWYDVKAPSMFTTRQIGKTLVNRTQGTKIASEGLKGRVFEVSLADLQNDTDAERSYRKFRLIAEDVQARNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVRTTDGYLLRVFCIGFTNKDQLSQRKTCYAQHTQVRQIRRKMVDNITSSISNSDLRVVVNKLIPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFE 227          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_NANOT (40S ribosomal protein S1 OS=Nannizzia otae (strain CBS 113480) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 5.314e-64
Identity = 124/197 (62.94%), Postives = 156/197 (79.19%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732
            D Y +KAP+ F+VR+VGKTLV RT G K A++ LK RVFEVSL DL  +E H++RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V VKTTD++ +RLF I FTKR PNQ+K+T YAQ+SQIR I +KM EI+  QA+SC L  L  K + E+IG+EIEK+T  IYPLQNV +RKVK LK+P F+
Sbjct:   28 DEYLVKAPTTFQVRDVGKTLVNRTTGLKNANDYLKGRVFEVSLADLQKDEAHSFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLVRLFAIAFTKRRPNQIKKTTYAQSSQIRAIRKKMTEIIQRQASSCTLTQLT-KLVPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFD 223          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_AJECN (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 6.940e-64
Identity = 124/197 (62.94%), Postives = 156/197 (79.19%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732
            D Y +KAPS F VR+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR I +K+ EI+  +A+S  L  L  K I E+IG+EIEK+T  IYPLQNV +RKVK LK+P F+
Sbjct:   28 DEYSVKAPSTFAVRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASSRTLAQLT-KLIPEVIGREIEKSTHGIYPLQNVHIRKVKLLKSPKFD 223          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_AJEDS (40S ribosomal protein S1 OS=Ajellomyces dermatitidis (strain SLH14081) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 9.063e-64
Identity = 123/197 (62.44%), Postives = 156/197 (79.19%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732
            D Y +KAPS F +R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR I +K+ EI+  +A++  L  L  K I E+IG+EIEKAT  IYPLQNV +RKVK LK+P F+
Sbjct:   28 DEYSVKAPSTFAIRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFD 223          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_AJEDR (40S ribosomal protein S1 OS=Ajellomyces dermatitidis (strain ER-3) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 9.063e-64
Identity = 123/197 (62.44%), Postives = 156/197 (79.19%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732
            D Y +KAPS F +R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR I +K+ EI+  +A++  L  L  K I E+IG+EIEKAT  IYPLQNV +RKVK LK+P F+
Sbjct:   28 DEYSVKAPSTFAIRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFD 223          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJY (40S ribosomal protein S1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=rps1 PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 1.184e-63
Identity = 119/198 (60.10%), Postives = 152/198 (76.77%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFES 735
            DWYDIKAPS F V+NVGKTLV RT G K A++ LK R+ EVSL DL  +EEH++RK++LR +DVQGK  LT F GM+ T+DKLRSLVRKW T IEA   +KTTD +  R+F IGFT+R  NQ+K+T YAQ+SQIR I +KM +++  QA  C ++ LV+K I E+IG+EIEKAT  I+PLQNVF+RKVK LK+P  ++
Sbjct:   28 DWYDIKAPSFFEVKNVGKTLVNRTAGLKNANDALKGRIVEVSLADLQKDEEHSFRKVKLRVDDVQGKACLTTFNGMSMTSDKLRSLVRKWQTTIEADQTIKTTDGYVCRIFVIGFTRRRYNQIKKTTYAQSSQIRAIRQKMFQVIQNQATGCSMRELVQKLIPEIIGREIEKATGGIFPLQNVFVRKVKILKSPKLDA 225          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_CRYHO (40S ribosomal protein S3a OS=Cryptosporidium hominis GN=Chro.40360 PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 1.184e-63
Identity = 117/197 (59.39%), Postives = 156/197 (79.19%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732
            ++YD++APS F+VRN G T+ ++ QGTK+A + L+HRV+EVSL DL N+E+ A+RKI+L+ ED+QG+  LT F GM+ T DKL SL+RK+ TLIEA+ +VKT+D + LRLFCI FT+R+ +QVK TCYAQTSQIRQI +KM EI+ A+A    L+ LV+KFI E IGKEIEKA   I+PLQ+VF+RKVK L  P+F+
Sbjct:   28 EFYDLRAPSTFKVRNFGTTIASKNQGTKLAVDALRHRVYEVSLADLNNDEDQAFRKIKLQCEDIQGRTCLTEFHGMDMTRDKLCSLIRKYQTLIEAHCNVKTSDGYVLRLFCIAFTRRMADQVKSTCYAQTSQIRQIRKKMVEIITAEAEGTTLRDLVKKFIPESIGKEIEKACRHIFPLQHVFIRKVKVLSKPSFD 224          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_AJECG (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.546e-63
Identity = 123/197 (62.44%), Postives = 156/197 (79.19%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732
            D Y +KAPS F VR+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR I +K+ EI+  +A++  L  L  K I E+IG+EIEK+T  IYPLQNV +RKVK LK+P F+
Sbjct:   28 DEYSVKAPSTFAVRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKSTHGIYPLQNVHIRKVKLLKSPKFD 223          
The following BLAST results are available for this feature:
BLAST of DY260375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
RS3A_PARBA1.826e-6463.4540S ribosomal protein S1 OS=Paracoccidioides brasi... [more]
RS3A_CANTT1.826e-6459.3940S ribosomal protein S1 OS=Candida tropicalis (st... [more]
RS3A_TRIIF5.314e-6461.8140S ribosomal protein S3a OS=Triatoma infestans PE... [more]
RS3A_NANOT5.314e-6462.9440S ribosomal protein S1 OS=Nannizzia otae (strain... [more]
RS3A_AJECN6.940e-6462.9440S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_AJEDS9.063e-6462.4440S ribosomal protein S1 OS=Ajellomyces dermatitid... [more]
RS3A_AJEDR9.063e-6462.4440S ribosomal protein S1 OS=Ajellomyces dermatitid... [more]
RS3A_SCHJY1.184e-6360.1040S ribosomal protein S1 OS=Schizosaccharomyces ja... [more]
RS3A_CRYHO1.184e-6359.3940S ribosomal protein S3a OS=Cryptosporidium homin... [more]
RS3A_AJECG1.546e-6362.4440S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YE20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260375 ID=DY260375; Name=DY260375; organism=Citrus clementina; type=EST; length=1226bp
AACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTCTCTTGAGCAGCAG
CTGCACAAACATGGCTGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGA
AAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTAT
GATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCT
TGTTACCCGGACTCAGGGTACCAAGATTGCATCAGAAGGTCTCAAGCACA
GAGTGTTTGAGGTATCACTAGGTGATCTTCTCAATGAAGAAGAGCATGCT
TACAGGAAGATCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTTTT
GACTAACTTCTGGGGCATGAATTTCACTACAGACAAGCTGAGGTCTTTGG
TTAGGAAGTGGCATACCTTGATTGAAGCTTACGTGGATGTCAAGACCACT
GATAACTTCACATTGAGGTTGTTCTGCATTGGATTCACCAAGAGACTTCC
AAACCAGGTTAAGAGGACTTGCTACGCACAGACCAGCCAGATTAGACAGA
TTCCCCGCAAGATGAGGGAGATCATGGTTGCTCAGGCAGCATCTTGTGAT
CTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAATGATTGGAAAAGAGAT
TGAAAAGGCAACGTCAAGCATATACCCCTTACAAAATGTGTTCCTTCGCA
AAGTGAAAACCCTGAAAGCTCCCAATTTTGAATCTTTGGAAAATTGAGGG
AAGTTCCCCGGCAATTACCCCCGAAAATGTTGGGTGAGAAGGGGGATAGG
CCCACCGAAGAAGCCCATGCCGGAAGCCCCACCCGAAACTGCATGGAAAC
CCTCGAACGGGAATAACAAAAAATTTTTCCGCGTTTGATTTTTCCAACCT
AATCCCACCCGCGGGCTGTTTCTTGCACCCTTAAATCCCCCCCCACTCGC
ACCTCGCATCTCACCTCTATCATCAACTCTCCCCACATGCCCCCGCACAA
ACAGCTAACGGTCCACACTCACCAACAGACACCAAAGCACACCCTTATCA
CTCTGCCTGATATCGTCACTGAACAATGAAATAACCCCTACTTGTCACAC
ACTATTTGCTCTCTTACACCCAATACAAACTACTTACTTTACATCGAACG
TATCCGAAATTTCCAAACATCACTACCACTCAGATCTTCACTCTCAATTA
ACTACGTTTCACTGCAAACATCTGCC
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