DY260375

Overview
NameDY260375
Unique NameDY260375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1226
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A2_SCHPO (40S ribosomal protein S1-B OS=Schizosaccharomyces pombe GN=rps102 PE=1 SV=3)

HSP 1 Score: 243.817 bits (621), Expect = 1.546e-63
Identity = 118/198 (59.60%), Postives = 155/198 (78.28%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFES 735
            +WYDIKAP+ F V+NVGKTLV RT G K A++ LK R+ EVSL DL  +EEHA+RK++LR ED+QGK+ LT+F G++ T+DKLRSLVRKW T IEA   +KTTD +  R+F IGFT+R  NQVK+T YAQ+SQIR I +KM +++  Q +SC ++ LV+K I E+IG+EIE+AT SI+PLQNV +RKVK LKAP  ++
Sbjct:   28 EWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEEHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDA 225          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A2_PICST (40S ribosomal protein S1-B OS=Pichia stipitis GN=RPS1B PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.546e-63
Identity = 117/197 (59.39%), Postives = 155/197 (78.68%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732
            DW+DIKAPS F  RNVGKTL+ R+ G K A++GLK RV EVSL DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR  NQ+K+T YAQ+S++R++ +KM EIM  + ++  L  L  K I E+IG+EIEK+T +I+PLQNV +RKVK LK P F+
Sbjct:   28 DWFDIKAPSTFENRNVGKTLINRSTGLKNAADGLKGRVVEVSLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQANQIKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFD 224          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A1_SCHPO (40S ribosomal protein S1-A OS=Schizosaccharomyces pombe GN=rps101 PE=2 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 2.019e-63
Identity = 119/198 (60.10%), Postives = 153/198 (77.27%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFES 735
            DWYDIKAP+ F V+NVGKTLV RT G K A++ LK R+ EVSL DL  +EEH++RK++LR ED+QGK+ LT+F G + T+DKLRSLVRKW + IEA   +KTTD +  R+F IGFT R  NQVK+T YAQ+SQIR I +KM +++  QA  C +K LV+K I E+IG+ IEKAT++IYPLQNVF+RKVK LKAP  ++
Sbjct:   28 DWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEEHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDA 225          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_MALGO (40S ribosomal protein S1 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 3.444e-63
Identity = 115/197 (58.38%), Postives = 154/197 (78.17%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732
            +WYDIKAP  F  RNVGKT+V R+QG K AS+ LK R+ E SL DL  ++E AYRK +LR ++VQG+N LTNF+GM+FT+DKLRSLVRKW +LIEA+ D++TTD + LR+F IGFT+R  NQVK+T YA++SQI  I +KM E++  +++SCDL+  V K I E++G+EIEK+T  IYPL++VF+ KVK LK P F+
Sbjct:   27 EWYDIKAPVFFENRNVGKTIVNRSQGLKNASDALKGRILEQSLADLNKDDEQAYRKFQLRVDEVQGRNCLTNFYGMSFTSDKLRSLVRKWQSLIEAHQDIRTTDGYLLRVFAIGFTRRRANQVKKTTYAKSSQIHAIRKKMFEVIQRESSSCDLREFVAKLIPEVMGREIEKSTQGIYPLKDVFIHKVKVLKRPKFD 223          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_AJECH (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain H143) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 3.444e-63
Identity = 122/197 (61.93%), Postives = 156/197 (79.19%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732
            D Y +KAPS F VR+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR I +K+ EI+  +A++  L  L  K I E+IG+EI+K+T  IYPLQNV +RKVK LK+P F+
Sbjct:   28 DEYSVKAPSTFAVRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIDKSTHGIYPLQNVHIRKVKLLKSPKFD 223          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_BRUMA (40S ribosomal protein S3a OS=Brugia malayi GN=Bm1_27225 PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.002e-62
Identity = 124/197 (62.94%), Postives = 149/197 (75.63%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732
            +WYDIKAPS F V+++GKTLV RTQGTKIASEGLK RV+EVSLGDL N  E  +RK+RL  EDVQG+  LTNF GM  T DKL S+V+KWHTLIEA V VKT+D + LRLFCIGFTK+   Q+K+T YA++S+IRQI  KM E M  +    DLK +  K + + IGK+IEKA S IYPLQ+V +RKVK LK P FE
Sbjct:   26 EWYDIKAPSMFNVQHIGKTLVNRTQGTKIASEGLKGRVYEVSLGDL-NNAESEFRKMRLICEDVQGRTCLTNFHGMRLTRDKLCSIVKKWHTLIEANVAVKTSDGYLLRLFCIGFTKKNARQLKKTSYAKSSKIRQIRAKMVEYMQKEVQGSDLKDVCHKLVPDSIGKDIEKACSYIYPLQDVCIRKVKILKKPKFE 221          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_PICGU (40S ribosomal protein S1 OS=Pichia guilliermondii GN=RPS1 PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 1.309e-62
Identity = 115/197 (58.38%), Postives = 155/197 (78.68%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732
            +W+DIKAP+ F  R VGKTL+ ++ G K A++GLK RV EV+L DL   E+HAYRK++LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT D++ LR+F I FTKR PNQVK+T YAQ+S++R+I +KM EIM  + ++  L  L +K I E+IG+EIEK+T +I+PLQNV +RKVK LK P F+
Sbjct:   28 EWFDIKAPTTFENRAVGKTLINKSTGLKNAADGLKGRVIEVNLADLQGSEDHAYRKVKLRVDEVQGKNLLTNFHGIDFTSDKLRSLVRKWQSLVEANVTVKTADDYYLRVFAIAFTKRQPNQVKKTTYAQSSKLREIRKKMMEIMQREVSNSTLAQLTQKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFD 224          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A2_CLAL4 (40S ribosomal protein S1-B OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 1.309e-62
Identity = 115/197 (58.38%), Postives = 153/197 (77.66%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732
            +W+DIKAPS F  RNVGKTL+ ++ G K A++GLK RVFEV L DL   E+H+YRK++LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT D++ LR+F I FTKR  NQVK+T YAQ+S++R++ +KM EIM  + ++  L  L  K I E+IG+EIEK+T SI PLQN+ +RKVK LK P F+
Sbjct:   28 EWFDIKAPSTFENRNVGKTLINKSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKVKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQVKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQSILPLQNIHIRKVKLLKQPKFD 224          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A1_CLAL4 (40S ribosomal protein S1-A OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 1.309e-62
Identity = 115/197 (58.38%), Postives = 153/197 (77.66%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732
            +W+DIKAPS F  RNVGKTL+ ++ G K A++GLK RVFEV L DL   E+H+YRK++LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT D++ LR+F I FTKR  NQVK+T YAQ+S++R++ +KM EIM  + ++  L  L  K I E+IG+EIEK+T SI PLQN+ +RKVK LK P F+
Sbjct:   28 EWFDIKAPSTFENRNVGKTLINKSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKVKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQVKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQSILPLQNIHIRKVKLLKQPKFD 224          
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_APLCA (40S ribosomal protein S3a OS=Aplysia californica GN=RPS3A PE=3 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 1.709e-62
Identity = 120/197 (60.91%), Postives = 152/197 (77.16%), Query Frame = 1
Query:  142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732
            +WYD+KAPS F VR +GKTLVTR+QGTKIAS+ LK RVFEVSL DL N+E   +RK +L AE+VQG+NVLTNF GM+ T DKL S+V+KW TLIEA VDVKTTD + LR+F IGFTK+  NQVK+TCYAQ +Q++ I +KM EI+  + +S D+K +V K I + IGK+IEK+   IYPL +V + KVK LK P F+
Sbjct:   29 EWYDVKAPSMFAVRQIGKTLVTRSQGTKIASDNLKGRVFEVSLADLQNDEV-TFRKFKLIAEEVQGRNVLTNFSGMSLTRDKLCSMVKKWQTLIEANVDVKTTDGYLLRVFAIGFTKKRNNQVKKTCYAQHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFD 224          
The following BLAST results are available for this feature:
BLAST of DY260375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
RS3A2_SCHPO1.546e-6359.6040S ribosomal protein S1-B OS=Schizosaccharomyces ... [more]
RS3A2_PICST1.546e-6359.3940S ribosomal protein S1-B OS=Pichia stipitis GN=R... [more]
RS3A1_SCHPO2.019e-6360.1040S ribosomal protein S1-A OS=Schizosaccharomyces ... [more]
RS3A_MALGO3.444e-6358.3840S ribosomal protein S1 OS=Malassezia globosa (st... [more]
RS3A_AJECH3.444e-6361.9340S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_BRUMA1.002e-6262.9440S ribosomal protein S3a OS=Brugia malayi GN=Bm1_... [more]
RS3A_PICGU1.309e-6258.3840S ribosomal protein S1 OS=Pichia guilliermondii ... [more]
RS3A2_CLAL41.309e-6258.3840S ribosomal protein S1-B OS=Clavispora lusitania... [more]
RS3A1_CLAL41.309e-6258.3840S ribosomal protein S1-A OS=Clavispora lusitania... [more]
RS3A_APLCA1.709e-6260.9140S ribosomal protein S3a OS=Aplysia californica G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YE20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260375 ID=DY260375; Name=DY260375; organism=Citrus clementina; type=EST; length=1226bp
AACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTCTCTTGAGCAGCAG
CTGCACAAACATGGCTGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGA
AAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTAT
GATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCT
TGTTACCCGGACTCAGGGTACCAAGATTGCATCAGAAGGTCTCAAGCACA
GAGTGTTTGAGGTATCACTAGGTGATCTTCTCAATGAAGAAGAGCATGCT
TACAGGAAGATCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTTTT
GACTAACTTCTGGGGCATGAATTTCACTACAGACAAGCTGAGGTCTTTGG
TTAGGAAGTGGCATACCTTGATTGAAGCTTACGTGGATGTCAAGACCACT
GATAACTTCACATTGAGGTTGTTCTGCATTGGATTCACCAAGAGACTTCC
AAACCAGGTTAAGAGGACTTGCTACGCACAGACCAGCCAGATTAGACAGA
TTCCCCGCAAGATGAGGGAGATCATGGTTGCTCAGGCAGCATCTTGTGAT
CTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAATGATTGGAAAAGAGAT
TGAAAAGGCAACGTCAAGCATATACCCCTTACAAAATGTGTTCCTTCGCA
AAGTGAAAACCCTGAAAGCTCCCAATTTTGAATCTTTGGAAAATTGAGGG
AAGTTCCCCGGCAATTACCCCCGAAAATGTTGGGTGAGAAGGGGGATAGG
CCCACCGAAGAAGCCCATGCCGGAAGCCCCACCCGAAACTGCATGGAAAC
CCTCGAACGGGAATAACAAAAAATTTTTCCGCGTTTGATTTTTCCAACCT
AATCCCACCCGCGGGCTGTTTCTTGCACCCTTAAATCCCCCCCCACTCGC
ACCTCGCATCTCACCTCTATCATCAACTCTCCCCACATGCCCCCGCACAA
ACAGCTAACGGTCCACACTCACCAACAGACACCAAAGCACACCCTTATCA
CTCTGCCTGATATCGTCACTGAACAATGAAATAACCCCTACTTGTCACAC
ACTATTTGCTCTCTTACACCCAATACAAACTACTTACTTTACATCGAACG
TATCCGAAATTTCCAAACATCACTACCACTCAGATCTTCACTCTCAATTA
ACTACGTTTCACTGCAAACATCTGCC
back to top