DY260387

Overview
NameDY260387
Unique NameDY260387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1254
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY260387 vs. ExPASy Swiss-Prot
Match: C3H42_ORYSJ (Zinc finger CCCH domain-containing protein 42 OS=Oryza sativa subsp. japonica GN=Os06g0519400 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.221e-16
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 3 
Query:  261 PERPGEPECQYFLKTGDCKFGSSCRFHHPRDRV------VPRTNC--------------ALSPLGLPLRPGAQPCTFYLQNGRCKFGATCKFDHP 485
            P+RPGE +C ++L+ G CK+G +CRF+HP DR+       P   C               L+ LGLPLRPG   C++Y+  G CKFG+ CKF HP
Sbjct:  118 PQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHP 212

HSP 2 Score: 79.337 bits (194), Expect = 5.160e-14
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 3 
Query:  252 QSFPERPGEPECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCTFYLQNGRCKFGATCKFDHP 485
            Q +P RPG P+C Y+++ G CKFG  C ++HP              L  P RPG   C  YL+ GRCK+G  C+F+HP
Sbjct:   74 QEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHA-----GGCDKLEHPQRPGEHDCLHYLRFGRCKYGMNCRFNHP 146
The following BLAST results are available for this feature:
BLAST of DY260387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
C3H42_ORYSJ4.221e-1643.16Zinc finger CCCH domain-containing protein 42 OS=O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YF10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260387 ID=DY260387; Name=DY260387; organism=Citrus clementina; type=EST; length=1254bp
CGCTTTTAGCTAGTTCTTATGTGCAAGGAGCTTATGGTCCAGTGCTTTTT
TCTCCGGGAGTAGTTCCTTTTTCTGGCTGGAATCCCTACTCGGCATCTGT
AAGTCCTGTGTTATCTCCTGGTGCACAACCTGCAGTTGGAGCTACTTCTC
TATATGGAGTAACTCAGATATCTTCTTCAATGCCTGCACTTGCAGGGCTT
TATCCCTCCTTGCCCTCATCTGCTGGTCCTTCGAGTAGTGGCCAGATGGA
ACAATCATTTCCAGAGAGACCAGGAGAACCTGAATGCCAGTATTTCTTGA
AAACTGGGGACTGTAAGTTTGGATCATCTTGCAGGTTTCATCATCCTCGG
GATAGGGTTGTGCCAAGAACAAACTGTGCCCTCAGCCCACTTGGTCTCCC
TCTGCGTCCGGGTGCACAGCCTTGTACTTTCTACTTGCAGAATGGGCGCT
GCAAGTTTGGGGCCACTTGCAAATTTGATCATCCAATGGGAGCAATGAGA
TATAGTCCGTCAGCTTCATCTCTCATAGAGACGCCAGTGGCTCCCTACCC
AGTTGGGTCTTTGCTATCCACTCTGGCCCCTGCATCCTCCTCTTCTGATC
TGCGGCCTGAATTGATTTCTGGGTCCAAAAAGGATTCATTGTTGAGCAGA
ATTCCTTCCTCTGGAAACACCTCCAGTAGTTCGGTTGGTTTAATTTTCCC
CCAAACGGGAACCCGTTCCCCCTTCCGATTTTGCAACCTTTCAGGTCCAA
GTTTCGTTCCCCTGAGTAACCACAAAAATGCCAAGGCAGGTGTTGAAATT
TCCCCGTTAAATTTAACATTAACCCAAAAAACACTATCTCCCACCCCCTG
GAGGAAGCGGAATCCCCCACCCCTTAAATCTTCCTCGCAAAAACAACCAA
TCAAAATTACAGTAACCCGCGCCCAACTTTACCCGCGCTCTGGCGTCACC
TACCCCAGTAAAATACCGCACGCGCCAACGCATTAGTAAAAGACCGCCCC
CTCATCCTTACCCCCACCCCCCACAAAACCTTTCACAAGCCGAACAACCC
CTAGAAAACTCTTCCCCCTTGCTCTCTTCCTTCTACCACCGCCACATGAA
ACCCTCCCTAACCCTAGACACACCCAAGTTCTGCGCCTCCCCCGCCCTCG
CCTCCGCTCCCTCTTACACCCCTACCACCCCACACCTGCCCCGCAATCTA
CCACCAAAGAATCTCCCACTATCACCCCATCTACTCTCTCATACCCCCCA
CAAC
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