DY260422

Overview
NameDY260422
Unique NameDY260422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1207
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH60_POLSQ (60 kDa chaperonin OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=groL PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.146e-29
Identity = 73/183 (39.89%), Postives = 110/183 (60.11%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIA 740
            D ++G   A+ A +  L   ++P T+ ++IA  G+ +AN D  IG+ IA+A EK     +  + D K+    EL++  GM  DRGYLSPYFI   + +  VL  PY+++ +KK++N    DLL  +  V + +G  +LIIAED+E + LA+ V+N +    K C +K PGFG+ RKA L DIA
Sbjct:  115 DLKRGIDKAVTAAIAELAKISKPCTTTKEIAQVGSISANSDHSIGQRIAEAMEKVGKEGVITVEDGKSLED-ELEVVEGMQFDRGYLSPYFINQPEKQVAVLESPYVLLFDKKIAN--IRDLLPVLEQVAK-SGRPLLIIAEDVEGEALATLVVNNIRGIIKTCAVKAPGFGDRRKAMLEDIA 293          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH602_VIBVY (60 kDa chaperonin 2 OS=Vibrio vulnificus (strain YJ016) GN=groL2 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.146e-29
Identity = 79/190 (41.58%), Postives = 114/190 (60.00%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIANSPMGKV 761
            D ++G   A+D+ V  L + AQP +  E I   G+ +AN DR IG++IA+A EK  G N  +  +     S EL +  GM  DRGYLSPYFITN  +    L +PYI++++KKVS+    +LL  +  V + +   +LIIAEDI+ + LA+ V+N +    +A  +K PGFG++RKA L DIA    G V
Sbjct:  115 DLKRGIDKAVDSAVEKLRAMAQPCSDKESITQVGSISANSDRAIGDIIAEAMEKV-GRNGVITVEEGQGLSNELSVVEGMQFDRGYLSPYFITNQDSGAVELDNPYILLVDKKVSS--IRELLPVLESVAKAS-RSLLIIAEDIDGEALATLVVNNLRGIVRAAAVKAPGFGDNRKAMLEDIAVLTAGTV 300          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH602_VIBVU (60 kDa chaperonin 2 OS=Vibrio vulnificus GN=groL2 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.146e-29
Identity = 79/190 (41.58%), Postives = 114/190 (60.00%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIANSPMGKV 761
            D ++G   A+D+ V  L + AQP +  E I   G+ +AN DR IG++IA+A EK  G N  +  +     S EL +  GM  DRGYLSPYFITN  +    L +PYI++++KKVS+    +LL  +  V + +   +LIIAEDI+ + LA+ V+N +    +A  +K PGFG++RKA L DIA    G V
Sbjct:  115 DLKRGIDKAVDSAVEKLRAMAQPCSDKESITQVGSISANSDRAIGDIIAEAMEKV-GRNGVITVEEGQGLSNELSVVEGMQFDRGYLSPYFITNQDSGAVELDNPYILLVDKKVSS--IRELLPVLESVAKAS-RSLLIIAEDIDGEALATLVVNNLRGIVRAAAVKAPGFGDNRKAMLEDIAVLTAGTV 300          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH602_ERYLH (60 kDa chaperonin 2 OS=Erythrobacter litoralis (strain HTCC2594) GN=groL2 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.146e-29
Identity = 79/190 (41.58%), Postives = 107/190 (56.32%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIANSPMGKV 761
            D ++G  +A+  +V NL S ++ +   E+IA  G  +ANGDR +GE IA+A EK  G    +  D       EL+   GM  DRGYLSPYFITN       L +PYI+I EKK+SN      +  I      +G  +LIIAEDIE + LA+ V+N +    K   +K PGFG+ RKA L DIA    G++
Sbjct:  115 DLKRGIDIAVTKVVENLKSRSKDVAGSEEIAQVGIISANGDREVGEKIAEAMEKV-GKEGVITVDESKGLEFELETVEGMQFDRGYLSPYFITNPDKMTVELENPYILIHEKKLSN---LQAMLPILEAAVQSGRPLLIIAEDIEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLQDIAILTKGEM 300          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH602_ANADE (60 kDa chaperonin 2 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=groL2 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.146e-29
Identity = 74/183 (40.44%), Postives = 110/183 (60.11%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIA 740
            D ++G   A++A+VG L   ++P    ++IA  G  +ANGD  IG +IA+A EK     +  + + K   +  L +  GM  DRGYLSPYF+T+ +  E VL D YI+I EKK+SN    DLL  +  + R +G  ++I+AE++E + LA+ V+N +      C +K PGFG+ RKA L DIA
Sbjct:  115 DVKRGIDKAVEAIVGELKKLSKPTKDHKEIAQVGIISANGDTTIGNIIAEAMEKVGKEGVITVEEAKGLETT-LDVVEGMQFDRGYLSPYFVTDAERMEAVLEDAYILINEKKISN--MKDLLPLLEQIAR-SGKPLIIVAEEVEGEALATLVVNKLRGTLHVCAVKAPGFGDRRKAMLEDIA 293          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: HSP60_CANAL (Heat shock protein 60, mitochondrial OS=Candida albicans GN=HSP60 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.415e-29
Identity = 75/192 (39.06%), Postives = 117/192 (60.94%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIANSPMGKVWT 767
            D R+G++ A++A++  L    + IT+ E+IA   T +ANGD+ IG+L+A A EK     +  + + KT    EL++  GM  DRG++SPYFITN KT +    +P I++ EKK+S+    D+L  +  +       +LIIAED++ + LA+ +LN +    + C +K PGFG++RK TL DIA    G V+T
Sbjct:  131 DLRRGSQAAVEAVIEFLQKNKKEITTSEEIAQVATISANGDKHIGDLLANAMEKVGKEGVITVKEGKTLED-ELEVTEGMKFDRGFISPYFITNTKTGKVEFENPLILLSEKKISSIQ--DILPSL-ELSNQTRRPLLIIAEDVDGEALAACILNKLRGQVQVCAVKAPGFGDNRKNTLGDIAILSGGTVFT 318          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH60_VEREI (60 kDa chaperonin OS=Verminephrobacter eiseniae (strain EF01-2) GN=groL PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.415e-29
Identity = 78/203 (38.42%), Postives = 117/203 (57.64%), Query Frame = 3
Query:  153 KGEFYMREDAEVPDQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIANSPMGKV 761
            +G  Y+       D ++G   A+ ALV  L   ++P T+ ++IA  G+ +AN D  IG+LIA A +K     +  + D K+  S EL +  GM  DRGYLSPYFI N   +  +L +P++++ +KK+SN    DLL  +  V +  G  +L+IAE++E + LA+ V+N +    K   +K PGFG+ RKA L DIA    GKV
Sbjct:  102 EGFKYVAAGINPMDLKRGIDKAVTALVAELKKASKPTTTSKEIAQVGSISANADETIGKLIADAMDKVGKEGVITVEDGKSLES-ELDVVEGMQFDRGYLSPYFINNPDKQAALLDNPFVLLFDKKISN--IRDLLPTLEQVAKA-GRPLLVIAEEVEGEALATLVVNTIRGILKVVAVKAPGFGDRRKAMLEDIAILTGGKV 300          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH60_RHOMR (60 kDa chaperonin OS=Rhodothermus marinus GN=groL PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.415e-29
Identity = 77/183 (42.08%), Postives = 109/183 (59.56%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIA 740
            D ++G   A++ +V  L   +Q +    +IA   T +ANGD+ IG+LIA AFEK   + +  + + K   +  L++  GM  DRGYLSPYF+TN  T E VL D YI+I +KK+S     DLL  +  V +  G  +LIIAED+E + LA+ V+N +    K   +K PGFG+ RKA L DIA
Sbjct:  115 DLKRGIDKAVEVVVAELRKMSQEVQDKNRIAQVATISANGDKAIGQLIADAFEKVGKDGVITVEEAKGTETT-LEVVEGMQFDRGYLSPYFVTNPDTMEAVLEDAYILIHDKKIS--AMKDLLPILEKVVQ-TGRPLLIIAEDVEGEALATLVVNKLRGVLKVAAVKAPGFGDRRKAMLEDIA 293          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH60_POLNS (60 kDa chaperonin OS=Polynucleobacter necessarius (strain STIR1) GN=groL PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.415e-29
Identity = 73/183 (39.89%), Postives = 111/183 (60.66%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIA 740
            D ++G   A+ A +  L   ++P T+ ++IA  G+ +AN D+ IG+ IA+A EK     +  + D K+    EL++  GM  DRGYLSPYFI   + +  VL  PY+++ +KK++N    DLL  +  V + +G  +LIIAED+E + LA+ V+N +    K C +K PGFG+ RKA L DIA
Sbjct:  115 DLKRGIDKAVTAAIEELAKISKPCTTTKEIAQVGSISANSDQSIGQRIAEAMEKVGKEGVITVEDGKSLED-ELEVVEGMQFDRGYLSPYFINQPEKQVAVLESPYVLLFDKKIAN--IRDLLPVLEQVAK-SGRPLLIIAEDVEGEALATLVVNNIRGIIKTCAVKAPGFGDRRKAMLEDIA 293          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH60_CHLT3 (60 kDa chaperonin OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=groL PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.415e-29
Identity = 75/186 (40.32%), Postives = 112/186 (60.22%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPV---RRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIA 740
            D ++G   A+  ++  L   ++PI   ++IA  G  +AN D  IG+LIA+A EK   + +  + + K   + EL++  GM  DRGYLSPYF+TN  + E VL +PYI+I +KK+SN      + E+ P+      +G  +LIIAE+IE + LA+ V+N +    K C +K PGFG+ RKA L DIA
Sbjct:  115 DLKRGIDKAVTGVIIELKKISRPIADKKEIAQVGCISANNDSEIGDLIAEAMEKVGKDGVITVEEAKGTET-ELKVVEGMQFDRGYLSPYFVTNADSMEAVLDEPYILIYDKKISN------MKELLPILEKTAQSGRPLLIIAEEIEGEALATLVVNKLRGTLKVCAVKAPGFGDRRKAMLEDIA 293          
The following BLAST results are available for this feature:
BLAST of DY260422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_POLSQ4.146e-2939.8960 kDa chaperonin OS=Polynucleobacter sp. (strain ... [more]
CH602_VIBVY4.146e-2941.5860 kDa chaperonin 2 OS=Vibrio vulnificus (strain Y... [more]
CH602_VIBVU4.146e-2941.5860 kDa chaperonin 2 OS=Vibrio vulnificus GN=groL2 ... [more]
CH602_ERYLH4.146e-2941.5860 kDa chaperonin 2 OS=Erythrobacter litoralis (st... [more]
CH602_ANADE4.146e-2940.4460 kDa chaperonin 2 OS=Anaeromyxobacter dehalogena... [more]
HSP60_CANAL5.415e-2939.06Heat shock protein 60, mitochondrial OS=Candida al... [more]
CH60_VEREI5.415e-2938.4260 kDa chaperonin OS=Verminephrobacter eiseniae (s... [more]
CH60_RHOMR5.415e-2942.0860 kDa chaperonin OS=Rhodothermus marinus GN=groL ... [more]
CH60_POLNS5.415e-2939.8960 kDa chaperonin OS=Polynucleobacter necessarius ... [more]
CH60_CHLT35.415e-2940.3260 kDa chaperonin OS=Chloroherpeton thalassium (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YH04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260422 ID=DY260422; Name=DY260422; organism=Citrus clementina; type=EST; length=1207bp
GATTTTTGGATTGTGAAACATCTTCTGGATTTTCTTAATTAAGAAATTAG
ATTTGCTGTGAATGGGAATGGAGTTAATTAATGGATACAGATCATCTGAT
CAAATTCAATTGACATCTATCTTCTGTCTGCAGGCACCAATTCTAAAGTT
AAAAGGGAGAATTTTATATGCGGGAGGATGCGGAAGTGCCAGACCAAAGA
CAAGGGGCTAGAATGGCAATTGATGCACTTGTGGGAAATTTATACAGCAC
AGCACAACCCATCACATCATTCGAACAAATAGCCCTGTTTGGAACGGCTG
CAGCAAATGGTGACAGAGTGATTGGCGAGCTCATAGCCAAGGCTTTTGAG
AAAGGTTGGGGAAACAATCTTCATGTGTTAGCTGATCGGAAAACACCACC
CAGTATTGAACTTCAGTTGTATTGGGGAATGACCCTAGACAGGGGCTATT
TGTCACCTTACTTCATCACCAATCATAAGACGAAAGAATGTGTTTTACGA
GATCCTTATATCATGATCCTTGAGAAAAAGGTTTCGAACTGCGTCTTCTT
TGACTTATTGACAGAGATTGGACCAGTTAGAAGATATAATGGCACAGATG
TACTGATCATTGCTGAAGATATTGAAAATGATCTCCTAGCAAGTCCTGTC
TTAAATGGAGTGGCTACAGCAACCAAGGCTTGTGTCATAAAACCTCCTGG
ATTTGGAGAAAGTAGGAAGGCTACCCTTCCGGACATTGCCAATTCCCCTA
TGGGAAAGGTCTGGACAGGAAAAGATTTTGAATGCCTATCTCTTGGCCCG
CCTGAAAAAAATTACGGAATCAAGGAACCAAACGTTATCCCTTCTTTTGA
AGGCTGGCCTAGGAACCCCAAAAATTTGTTACTGGGGAAATTTCCCAAAG
GAAAAATTTAAAAAAATTTCCCCGGAAAAAAACCGGTAAAAACCCCCCCC
TTCCCCCCCCTCCTCTTAAAACGGTTCGTGGGAAATAAAAAAACCCTAAA
TTGCCCGAAAAAAAAAAAAAAAAATTTTCCAAACGCCCCAAACTGCCCCC
TCCGGGCCCCCCAAGAAAACGCCAGTTTTAGAGGGGTGTGGTTCCCCTTT
TTTTACCCCCCCCCTCCCCGCCCGCTGGCACAAAAAAATTTCCAAAAACA
CTCAAACACCCCCCGCGCCCCACAAAAAAGAAGGGGGGGGGTATTAAACC
CCTAGCC
back to top