DY260422

Overview
NameDY260422
Unique NameDY260422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1207
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH602_PSYIN (60 kDa chaperonin 2 OS=Psychromonas ingrahamii (strain 37) GN=groL2 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.206e-28
Identity = 78/204 (38.24%), Postives = 114/204 (55.88%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIANSPMGKVWT---GKDFECLSL 794
            D ++G    + A V  L   + P +  + I   GT +AN D  IGE+IA+A +K  GN   +  +       EL +  GM  DRGYLSPYF+TNH++    L +PYI++++KK+ N    +LL  +  V + +   +LIIAED+E + LA+ V+N +    K C +K PGFG+ RKA L DIA    G V +   G D E + L
Sbjct:  114 DLKRGIDQTVKAAVAELKKLSTPCSDSKAITQVGTISANSDHEIGEIIARAMQKV-GNQGVITVEEGQGLETELDVVEGMQFDRGYLSPYFMTNHESGTVELENPYILLVDKKIGN--IRELLPTLEAVAKAS-KPLLIIAEDVEGEALATLVVNNMRGIVKVCAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGLDMEKVQL 313          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH601_ANADF (60 kDa chaperonin 1 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=groL1 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.206e-28
Identity = 75/190 (39.47%), Postives = 107/190 (56.32%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIANSPMGKV 761
            D ++G   A++ +V  L   ++P    + IA  GT +ANGD  IG +IA+A EK     +  + + K   +  L +  GM  DRGY SPYF+TN    E VL DP+I+I EKK+S     DL+  +  V R +G  +LI+AED+E + LA+ V+N +      C +K PGFG+ RK  L DIA    G V
Sbjct:  115 DLKRGIDRAVEVIVAELKKLSKPTQGKKDIAQVGTISANGDETIGNIIAEAMEKVGKEGVITVEEAKGLETT-LDVVEGMQFDRGYSSPYFVTNPDRMEAVLEDPFILITEKKIS--AMADLIPVLEQVAR-SGKPLLIVAEDVEGEALATLVVNKLRGTLHVCAVKAPGFGDRRKEMLKDIATLTGGNV 300          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH60_ZYMMO (60 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.576e-28
Identity = 78/193 (40.41%), Postives = 109/193 (56.48%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRR---YNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIANSPMGKV 761
            D ++G  +A   +V +L S ++P++ F ++A  G  +ANGD  +G  IA+A EK  G    +  +       EL +  GM  DRGYLSPYFITN +     L DPYI+I EKK+SN      L  I P+      +G  +LIIAEDIE + LA+ V+N +    K   +K PGFG+ RKA L DIA    G++
Sbjct:  115 DLKRGIDLAATKVVESLRSRSKPVSDFNEVAQVGIISANGDEEVGRRIAEAMEKV-GKEGVITVEEAKGFDFELDVVEGMQFDRGYLSPYFITNPEKMVAELADPYILIYEKKLSN------LQSILPILESVVQSGRPLLIIAEDIEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTKGEL 300          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH60_METPP (60 kDa chaperonin OS=Methylibium petroleiphilum (strain PM1) GN=groL PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.576e-28
Identity = 77/203 (37.93%), Postives = 119/203 (58.62%), Query Frame = 3
Query:  153 KGEFYMREDAEVPDQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIANSPMGKV 761
            +G  Y+       D ++G   A+ +LV  L   ++P T+ ++IA  GT +AN D  +G++IA A +K     +  + D K+  + EL +  GM  DRGYLSPYFI N + +  VL +P++++ +KK+SN    DLL  +  V + +G  +LIIAE++E + LA+ V+N +    K   +K PGFG+ RKA L DIA    GKV
Sbjct:  102 EGMKYVAAGMNPMDLKRGIDKAVVSLVEQLKKQSKPTTTSKEIAQVGTISANSDDDVGQIIASAMDKVGKEGVITVEDGKSLNN-ELDVVEGMQFDRGYLSPYFINNPEKQSAVLDNPFVLLYDKKISN--IRDLLPTLEQVAK-SGRPLLIIAEEVEGEALATLVVNTIRGILKVVAVKAPGFGDRRKAMLEDIAILTGGKV 300          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH60_CHLPB (60 kDa chaperonin OS=Chlorobium phaeobacteroides (strain BS1) GN=groL PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.576e-28
Identity = 75/183 (40.98%), Postives = 111/183 (60.66%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIA 740
            D ++G   A+  ++G L + +  I+   +IA  GT +AN D  IG+LIA A EK   + +  + + K   + EL++  GM  DRGYLSPYF+TN +  +  L DPYI+I +KK+SN    DLL  +    + +G  ++II+EDIE + LA+ V+N +    K C +K PGFG+ RKA L DIA
Sbjct:  115 DLKRGIDKAVKEVIGELRTISNDISGKIEIAQVGTISANNDPEIGQLIADAMEKVGKDGVITVEEAKGMDT-ELKVVEGMQFDRGYLSPYFVTNSEKMDAELEDPYILIHDKKISN--MKDLLPILEKTAQ-SGRPLMIISEDIEGEALATLVVNKLRGTLKVCAVKAPGFGDRRKAMLEDIA 293          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH60_CHLL2 (60 kDa chaperonin OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=groL PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.576e-28
Identity = 75/186 (40.32%), Postives = 112/186 (60.22%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRR---YNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIA 740
            D ++G   A+  +V  L + ++ I+  ++IA  GT +AN D  IGELIA+A +K   + +  + + K   + EL++  GM  DRGYLSPYF+TN +T E  + DP I+I +KK+ N      + E+ P+      +G  +LIIAEDIE + LA+ V+N +    K C +K PGFG+ RKA L DIA
Sbjct:  115 DLKRGIDRAVKEVVAELRNISRSISGKKEIAQVGTISANNDPEIGELIAEAMDKVGKDGVITVEEAKGMDT-ELKVVEGMQFDRGYLSPYFVTNPETMEAEIEDPLILIHDKKIGN------MKELLPILEKSAQSGRPLLIIAEDIEGEALATLVVNKLRGTLKVCAVKAPGFGDRRKAMLEDIA 293          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH602_CHRVO (60 kDa chaperonin 2 OS=Chromobacterium violaceum GN=groL2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.576e-28
Identity = 77/190 (40.53%), Postives = 113/190 (59.47%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIANSPMGKV 761
            D ++G   A+ +LVG +   A+P  + ++IA  G+ +AN D  IGE+IA A EK     +  + D K+  + EL +  GM  DRGYLSPYFI N   +   L +P+I++ +KK+SN    DLL  +  V + +G  +LIIAED+E + LA+ V+N +    K   +K PGFG+ RKA L DIA    G+V
Sbjct:  115 DLKRGIDKAVVSLVGEIAKIAKPCATSKEIAQVGSISANSDSDIGEIIANAMEKVGKEGVITVEDGKSLNN-ELDVVEGMQFDRGYLSPYFINNQDKQIAALDNPFILLFDKKISN--IRDLLPVLEQVAK-SGRPLLIIAEDVEGEALATLVVNTIRGILKVVAVKAPGFGDRRKAMLTDIAVLTGGEV 300          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH601_PSYIN (60 kDa chaperonin 1 OS=Psychromonas ingrahamii (strain 37) GN=groL1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.576e-28
Identity = 78/204 (38.24%), Postives = 114/204 (55.88%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIANSPMGKVWT---GKDFECLSL 794
            D ++G    + A V  L   + P +  + I   GT +AN D  IGE+IA+A +K  GN   +  +       EL +  GM  DRGYLSPYF+TNH++    L +PYI++++KK+ N    +LL  +  V + +   +LIIAED+E + LA+ V+N +    K C +K PGFG+ RKA L DIA    G V +   G D E + L
Sbjct:  114 DLKRGIDQTVKAAVAELKKLSTPCSDSKAITQVGTISANSDHEIGEIIAQAMQKV-GNQGVITVEEGQGLETELDVVEGMQFDRGYLSPYFMTNHESGTVELENPYILLVDKKIGN--IRELLPTLEAVAKAS-KPLLIIAEDVEGEALATLVVNNMRGIVKVCAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGLDMEKVQL 313          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH60_SULSY (60 kDa chaperonin OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=groL PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.058e-28
Identity = 74/181 (40.88%), Postives = 110/181 (60.77%), Query Frame = 3
Query:  198 RQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIA 740
            ++G   A+  +V  L   ++P+T  ++I    T +AN D  IG++IA A EK   + +  + + K+  ++ L++  GM  DRGYLSPYF+TN +  E VL +PYI+I EKKV N    +LL  +  V + N   +LIIAED+E + LA+ V+N +    + C +K PGFGE RKA L DIA
Sbjct:  117 KRGIDEAVKIIVEELKKISKPVTGRKEIEQVATISANNDPEIGKIIADAMEKVGKDGVITVEESKSAETV-LEVTEGMQFDRGYLSPYFVTNAEKMEAVLENPYILIYEKKVGN--IRELLPVLEKVVQTN-KPLLIIAEDVEGEALATLVVNHIKGVLRVCAVKAPGFGERRKAMLQDIA 293          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH60_PELPB (60 kDa chaperonin OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=groL PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.058e-28
Identity = 74/186 (39.78%), Postives = 113/186 (60.75%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPV---RRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIA 740
            D ++G   A+  +V  L + ++ I+  ++IA  GT +AN D VIG+LIA A +K   + +  + + K   + EL++  GM  DRGYLSPYF+TN +T +  L DP I+I +KK+SN      + E+ P+      +G  +LII+EDIE + LA+ V+N +    + C +K PGFG+ RKA L DIA
Sbjct:  115 DLKRGIDRAVKEVVQELRNISRSISGKKEIAQVGTISANNDPVIGDLIADAMDKVGKDGVITVEEAKGMDT-ELKVVEGMQFDRGYLSPYFVTNSETMDAELEDPLILIYDKKISN------MKELLPILEKSAQSGRPLLIISEDIEGEALATIVVNKLRGTLRVCAVKAPGFGDRRKAMLEDIA 293          
The following BLAST results are available for this feature:
BLAST of DY260422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_PSYIN1.206e-2838.2460 kDa chaperonin 2 OS=Psychromonas ingrahamii (st... [more]
CH601_ANADF1.206e-2839.4760 kDa chaperonin 1 OS=Anaeromyxobacter sp. (strai... [more]
CH60_ZYMMO1.576e-2840.4160 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=... [more]
CH60_METPP1.576e-2837.9360 kDa chaperonin OS=Methylibium petroleiphilum (s... [more]
CH60_CHLPB1.576e-2840.9860 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]
CH60_CHLL21.576e-2840.3260 kDa chaperonin OS=Chlorobium limicola (strain D... [more]
CH602_CHRVO1.576e-2840.5360 kDa chaperonin 2 OS=Chromobacterium violaceum G... [more]
CH601_PSYIN1.576e-2838.2460 kDa chaperonin 1 OS=Psychromonas ingrahamii (st... [more]
CH60_SULSY2.058e-2840.8860 kDa chaperonin OS=Sulfurihydrogenibium sp. (str... [more]
CH60_PELPB2.058e-2839.7860 kDa chaperonin OS=Pelodictyon phaeoclathratifor... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YH04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260422 ID=DY260422; Name=DY260422; organism=Citrus clementina; type=EST; length=1207bp
GATTTTTGGATTGTGAAACATCTTCTGGATTTTCTTAATTAAGAAATTAG
ATTTGCTGTGAATGGGAATGGAGTTAATTAATGGATACAGATCATCTGAT
CAAATTCAATTGACATCTATCTTCTGTCTGCAGGCACCAATTCTAAAGTT
AAAAGGGAGAATTTTATATGCGGGAGGATGCGGAAGTGCCAGACCAAAGA
CAAGGGGCTAGAATGGCAATTGATGCACTTGTGGGAAATTTATACAGCAC
AGCACAACCCATCACATCATTCGAACAAATAGCCCTGTTTGGAACGGCTG
CAGCAAATGGTGACAGAGTGATTGGCGAGCTCATAGCCAAGGCTTTTGAG
AAAGGTTGGGGAAACAATCTTCATGTGTTAGCTGATCGGAAAACACCACC
CAGTATTGAACTTCAGTTGTATTGGGGAATGACCCTAGACAGGGGCTATT
TGTCACCTTACTTCATCACCAATCATAAGACGAAAGAATGTGTTTTACGA
GATCCTTATATCATGATCCTTGAGAAAAAGGTTTCGAACTGCGTCTTCTT
TGACTTATTGACAGAGATTGGACCAGTTAGAAGATATAATGGCACAGATG
TACTGATCATTGCTGAAGATATTGAAAATGATCTCCTAGCAAGTCCTGTC
TTAAATGGAGTGGCTACAGCAACCAAGGCTTGTGTCATAAAACCTCCTGG
ATTTGGAGAAAGTAGGAAGGCTACCCTTCCGGACATTGCCAATTCCCCTA
TGGGAAAGGTCTGGACAGGAAAAGATTTTGAATGCCTATCTCTTGGCCCG
CCTGAAAAAAATTACGGAATCAAGGAACCAAACGTTATCCCTTCTTTTGA
AGGCTGGCCTAGGAACCCCAAAAATTTGTTACTGGGGAAATTTCCCAAAG
GAAAAATTTAAAAAAATTTCCCCGGAAAAAAACCGGTAAAAACCCCCCCC
TTCCCCCCCCTCCTCTTAAAACGGTTCGTGGGAAATAAAAAAACCCTAAA
TTGCCCGAAAAAAAAAAAAAAAAATTTTCCAAACGCCCCAAACTGCCCCC
TCCGGGCCCCCCAAGAAAACGCCAGTTTTAGAGGGGTGTGGTTCCCCTTT
TTTTACCCCCCCCCTCCCCGCCCGCTGGCACAAAAAAATTTCCAAAAACA
CTCAAACACCCCCCGCGCCCCACAAAAAAGAAGGGGGGGGGTATTAAACC
CCTAGCC
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