DY260430

Overview
NameDY260430
Unique NameDY260430
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1117
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: SAR1A_BRACM (GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.588e-14
Identity = 40/115 (34.78%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   85 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQD 429
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VD+ D++R  E++ EL  +L+++ L      +L NK D
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLATVPFLILGNKID 132          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.415e-14
Identity = 40/115 (34.78%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   85 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQD 429
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VD+ D++R  E++ EL  +L+++ L      +L NK D
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDEALATVPFLILGNKID 132          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARL10_HUMAN (ADP-ribosylation factor-like protein 10 OS=Homo sapiens GN=ARL10 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.737e-13
Identity = 44/119 (36.97%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   88 KEMRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNA 441
            ++  +L++GLD AGK+T L  L     +   IPT GFN   +  K+    + ++GG   +R  W+ +      L+FVVDS DR R+  AR ELH++L++D   D  + V+ NKQD + A
Sbjct:   76 EQREVLVLGLDGAGKSTFLRVLSGKPPLEGHIPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVVDSADRLRLPWARQELHKLLDKDP--DLPVVVVANKQDLSEA 192          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.397e-12
Identity = 36/98 (36.73%), Postives = 58/98 (59.18%), Query Frame = 1
Query:   85 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 378
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VDS D++R  E++ EL  +L+
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLS 115          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARL9_HUMAN (ADP-ribosylation factor-like protein 9 OS=Homo sapiens GN=ARL9 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.397e-12
Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 1
Query:   85 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLP-----NKQD 429
            +K  +IL++GLD AGKT++L+ L    +  ++ PT GF+   +  ++      ++GG    R  W  Y      LIFVVDS D  R+ EA+  LH+++       AA PVLP     NKQD
Sbjct:   16 EKNKQILVLGLDGAGKTSVLHSLASNRVQHSVAPTQGFHAVCINTEDSQMEFLEIGGSKPFRSYWEMYLSKGLLLIFVVDSADHSRLPEAKKYLHQLI-------AANPVLPLVVFANKQD 129          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARL10_MOUSE (ADP-ribosylation factor-like protein 10 OS=Mus musculus GN=Arl10 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 7.048e-12
Identity = 40/121 (33.06%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   88 KEMRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATN 447
            ++  +L++GLD +GK+T L  L     +   +PT GFN   +  KN    + ++G    +R  W+ +      L+F+VDS DR R+  AR EL ++L+ D   D  + ++ NKQD + A N
Sbjct:   75 EQREVLVLGLDGSGKSTFLRMLAGKPPVEGHVPTWGFNSVRLPTKNFEVDLLEIGDSQNLRFYWKEFVNEVDVLVFMVDSTDRLRLPWARQELQKLLDRDP--DLPVVIVANKQDLSGAMN 193          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: SAR1_ENCCU (Small COPII coat GTPase SAR1 OS=Encephalitozoon cuniculi GN=SAR1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.205e-12
Identity = 46/137 (33.58%), Postives = 67/137 (48.91%), Query Frame = 1
Query:   55 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPD 465
            F      LF K    IL +G+D AGKTT++ KLK       +PT   +   +E  N+   V D+GG    R  WR YF +  G++F+VD +D +R  E R+    +L+ +  + A + VL NK D    T      D
Sbjct:   24 FQNFVKSLFGKPSS-ILFLGIDNAGKTTLVNKLKSDSTDVYMPTHHPSTSYIEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVFIVDVHDVERFQEVREAYETVLSLE--KRAPVVVLMNKIDLEGHTPETAEAD 157          
The following BLAST results are available for this feature:
BLAST of DY260430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
SAR1A_BRACM2.588e-1434.78GTP-binding protein SAR1A OS=Brassica campestris G... [more]
SAR1B_ARATH4.415e-1434.78GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
ARL10_HUMAN3.737e-1336.97ADP-ribosylation factor-like protein 10 OS=Homo sa... [more]
SAR1_TOBAC5.397e-1236.73GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
ARL9_HUMAN5.397e-1236.36ADP-ribosylation factor-like protein 9 OS=Homo sap... [more]
ARL10_MOUSE7.048e-1233.06ADP-ribosylation factor-like protein 10 OS=Mus mus... [more]
SAR1_ENCCU9.205e-1233.58Small COPII coat GTPase SAR1 OS=Encephalitozoon cu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YH13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260430 ID=DY260430; Name=DY260430; organism=Citrus clementina; type=EST; length=1117bp
CTTAAGCAGCCTCCTTTTTCAGATCTCGTGAGATAACAGAAAATGGGGCT
GTCATTTACGAAACTTTTTAGCCGGCTTTTTGCCAAGAAAGAGATGCGAA
TTCTGATGGTGGGTCTCGACGCTGCTGGTAAGACCACCATTTTGTACAAG
CTCAAGCTCGGTGAGATTGTGACAACCATTCCTACCATTGGTTTCAACGT
GGAGACTGTGGAATATAAGAACATTAGCTTCACTGTTTGGGATGTTGGGG
GTCAGGATAAGATTCGTCCTTTGTGGAGACATTACTTCCAAAACACTCAA
GGACTTATCTTTGTGGTTGATAGCAATGATCGTGACCGTGTGGTTGAAGC
TAGAGATGAACTGCACCGGATGCTGAATGAGGATGAGTTGAGGGATGCTG
CGCTGCCTGTTTTACCCAACAAGCAAGATCGTACAAATGCCACGAACCGC
CCAAAGAACCCTGACAAGCATCGACCTCCTCCNCNNCNCCNNNCCCCCNC
CTNCTTCCCCCTCCTTCCTCCCCCTCTNCCTCTCCCCAACCAAACGCCTG
TACCGCCCCCTCATCCCTCTTCACCACTCAATCAACCCATACACACCCCC
TCCCCCACCCCCTCCGCAACGACCCATGCATAACCCTACCCACGCCTTTT
CTCACCCCATCGAATTCACCCCCCCTCTCCCCTCTCCCCCTTCCACACCC
ACCCGCGCTACCCCGACACACCTACCCTACCCCCCACCCCACCCCCTCCG
ACCCCACCTTCCCTCCCCACTCCTCCTCCCCCACCTCCTCATCGTAACCA
ATCTCTACAATATAACTCCTAACCACCTCCAACACAGCCCCTCCACAGCA
ATGTCACCACCCCCGCCACCCTCTAACCTCTTCACCCTATCCTCTCCTCC
ACCCTGAACACCTCCCCCAATCCCTCCTCATATCACAACACAAAATCCAC
ACACACCACACCACAAACGAATCCGACCCGTACCTCCACCTCAATCATCT
CGCACGCCCACTTATCACACCGCTCACCCCCAACCCCACATTCGCTTCAC
TCAAACATGACTCTATATCAGGCATCTAACCCCTCTATGCTGCCTATCCA
CGCCTCATCATACCTGA
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