DY260430

Overview
NameDY260430
Unique NameDY260430
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1117
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF5_RAT (ADP-ribosylation factor 5 OS=Rattus norvegicus GN=Arf5 PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 1.712e-58
Identity = 114/142 (80.28%), Postives = 122/142 (85.92%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MGL+ + LFSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV E+ DEL +ML EDELRDA L V  NKQD  NA    +  DK
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDK 142          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF5_MOUSE (ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 1.712e-58
Identity = 114/142 (80.28%), Postives = 122/142 (85.92%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MGL+ + LFSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV E+ DEL +ML EDELRDA L V  NKQD  NA    +  DK
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDK 142          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF5_HUMAN (ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 1.712e-58
Identity = 114/142 (80.28%), Postives = 122/142 (85.92%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MGL+ + LFSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV E+ DEL +ML EDELRDA L V  NKQD  NA    +  DK
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDK 142          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF12_CAEBR (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 1.712e-58
Identity = 117/142 (82.39%), Postives = 120/142 (84.51%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDA L V  NKQD   A N  +  DK
Sbjct:    1 MGNVFGSLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDK 142          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF2_DROME (ADP-ribosylation factor 2 OS=Drosophila melanogaster GN=Arf102F PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 2.236e-58
Identity = 114/144 (79.17%), Postives = 120/144 (83.33%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDKHR 474
            MGL+ + L +RLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+ EA  EL  ML EDELRDA L V  NKQD  NA    +  DK R
Sbjct:    1 MGLTISSLLTRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRITEAERELQNMLQEDELRDAVLLVFANKQDLPNAMTAAELTDKLR 144          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 3.814e-58
Identity = 116/142 (81.69%), Postives = 120/142 (84.51%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MG  F  LF  LF K+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDA L V  NKQD   A N  +  DK
Sbjct:    1 MGNVFGSLFKGLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDK 142          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 6.506e-58
Identity = 112/142 (78.87%), Postives = 121/142 (85.21%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MGL+ + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E  +EL +ML EDELRDA L +  NKQD  NA    +  DK
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAMAISEMTDK 142          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF3_TAKRU (ADP-ribosylation factor 3 OS=Takifugu rubripes GN=arf3 PE=3 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 6.506e-58
Identity = 116/142 (81.69%), Postives = 119/142 (83.80%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDA L V  NKQD  NA N  +  DK
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDK 142          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF3_RAT (ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 6.506e-58
Identity = 116/142 (81.69%), Postives = 119/142 (83.80%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDA L V  NKQD  NA N  +  DK
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDK 142          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 6.506e-58
Identity = 116/142 (81.69%), Postives = 119/142 (83.80%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDA L V  NKQD  NA N  +  DK
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDK 142          
The following BLAST results are available for this feature:
BLAST of DY260430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF5_RAT1.712e-5880.28ADP-ribosylation factor 5 OS=Rattus norvegicus GN=... [more]
ARF5_MOUSE1.712e-5880.28ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 ... [more]
ARF5_HUMAN1.712e-5880.28ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 ... [more]
ARF12_CAEBR1.712e-5882.39ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF2_DROME2.236e-5879.17ADP-ribosylation factor 2 OS=Drosophila melanogast... [more]
ARF12_CAEEL3.814e-5881.69ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF4_BOVIN6.506e-5878.87ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]
ARF3_TAKRU6.506e-5881.69ADP-ribosylation factor 3 OS=Takifugu rubripes GN=... [more]
ARF3_RAT6.506e-5881.69ADP-ribosylation factor 3 OS=Rattus norvegicus GN=... [more]
ARF3_PONAB6.506e-5881.69ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YH13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260430 ID=DY260430; Name=DY260430; organism=Citrus clementina; type=EST; length=1117bp
CTTAAGCAGCCTCCTTTTTCAGATCTCGTGAGATAACAGAAAATGGGGCT
GTCATTTACGAAACTTTTTAGCCGGCTTTTTGCCAAGAAAGAGATGCGAA
TTCTGATGGTGGGTCTCGACGCTGCTGGTAAGACCACCATTTTGTACAAG
CTCAAGCTCGGTGAGATTGTGACAACCATTCCTACCATTGGTTTCAACGT
GGAGACTGTGGAATATAAGAACATTAGCTTCACTGTTTGGGATGTTGGGG
GTCAGGATAAGATTCGTCCTTTGTGGAGACATTACTTCCAAAACACTCAA
GGACTTATCTTTGTGGTTGATAGCAATGATCGTGACCGTGTGGTTGAAGC
TAGAGATGAACTGCACCGGATGCTGAATGAGGATGAGTTGAGGGATGCTG
CGCTGCCTGTTTTACCCAACAAGCAAGATCGTACAAATGCCACGAACCGC
CCAAAGAACCCTGACAAGCATCGACCTCCTCCNCNNCNCCNNNCCCCCNC
CTNCTTCCCCCTCCTTCCTCCCCCTCTNCCTCTCCCCAACCAAACGCCTG
TACCGCCCCCTCATCCCTCTTCACCACTCAATCAACCCATACACACCCCC
TCCCCCACCCCCTCCGCAACGACCCATGCATAACCCTACCCACGCCTTTT
CTCACCCCATCGAATTCACCCCCCCTCTCCCCTCTCCCCCTTCCACACCC
ACCCGCGCTACCCCGACACACCTACCCTACCCCCCACCCCACCCCCTCCG
ACCCCACCTTCCCTCCCCACTCCTCCTCCCCCACCTCCTCATCGTAACCA
ATCTCTACAATATAACTCCTAACCACCTCCAACACAGCCCCTCCACAGCA
ATGTCACCACCCCCGCCACCCTCTAACCTCTTCACCCTATCCTCTCCTCC
ACCCTGAACACCTCCCCCAATCCCTCCTCATATCACAACACAAAATCCAC
ACACACCACACCACAAACGAATCCGACCCGTACCTCCACCTCAATCATCT
CGCACGCCCACTTATCACACCGCTCACCCCCAACCCCACATTCGCTTCAC
TCAAACATGACTCTATATCAGGCATCTAACCCCTCTATGCTGCCTATCCA
CGCCTCATCATACCTGA
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