DY260430

Overview
NameDY260430
Unique NameDY260430
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1117
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 6.506e-58
Identity = 116/142 (81.69%), Postives = 119/142 (83.80%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDA L V  NKQD  NA N  +  DK
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDK 142          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 6.506e-58
Identity = 116/142 (81.69%), Postives = 119/142 (83.80%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDA L V  NKQD  NA N  +  DK
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDK 142          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 6.506e-58
Identity = 116/142 (81.69%), Postives = 119/142 (83.80%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDA L V  NKQD  NA N  +  DK
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDK 142          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 1.110e-57
Identity = 110/133 (82.71%), Postives = 119/133 (89.47%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNA 441
            MGL+ + +FSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV E+ +EL +ML EDELRDA L V  NKQD  NA
Sbjct:    1 MGLTVSAIFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAEELQKMLQEDELRDAVLLVFANKQDMPNA 133          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 223.016 bits (567), Expect = 2.472e-57
Identity = 108/142 (76.06%), Postives = 122/142 (85.92%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MG+SF+KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE+VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF+NT+G+IFVVDSNDR R+ EAR+ L RMLNEDE+R+A L V  NKQD   A +  +  +K
Sbjct:    1 MGVSFSKLFSNLFGHKEMRILMVGLDGAGKTTVLYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRSRIAEAREVLQRMLNEDEIRNAVLLVFANKQDLPEAMSAAEITEK 142          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF4_PONAB (ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 PE=2 SV=3)

HSP 1 Score: 220.32 bits (560), Expect = 1.602e-56
Identity = 110/142 (77.46%), Postives = 120/142 (84.51%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MGL+ + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQD+IRPLW+HYFQNTQGLIFVVDSNDR+R+ E  DEL +ML  DELRDA L +  NKQD  NA    +  DK
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDK 142          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF4_HUMAN (ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 PE=1 SV=3)

HSP 1 Score: 220.32 bits (560), Expect = 1.602e-56
Identity = 110/142 (77.46%), Postives = 120/142 (84.51%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MGL+ + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQD+IRPLW+HYFQNTQGLIFVVDSNDR+R+ E  DEL +ML  DELRDA L +  NKQD  NA    +  DK
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDK 142          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFA (ADP-ribosylation factor 1 OS=Plasmodium falciparum GN=ARF1 PE=2 SV=3)

HSP 1 Score: 219.164 bits (557), Expect = 3.570e-56
Identity = 104/142 (73.24%), Postives = 125/142 (88.03%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MGL  ++LF+RLF KK++RILMVGLDAAGKTTILYK+KLGE+VTTIPTIGFNVETVE++NISFTVWDVGGQDKIRPLWRHY+ NT GLIFVVDSNDR+R+ +AR+ELHRM+NE+EL+DA + V  NKQD  NA +  +  +K
Sbjct:    1 MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEK 142          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF4_RAT (ADP-ribosylation factor 4 OS=Rattus norvegicus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 7.953e-56
Identity = 110/142 (77.46%), Postives = 119/142 (83.80%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MGL+ + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E    L +ML EDEL+DA L +  NKQD  NA    +  DK
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDK 142          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF4_MOUSE (ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 7.953e-56
Identity = 110/142 (77.46%), Postives = 119/142 (83.80%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MGL+ + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E    L +ML EDEL+DA L +  NKQD  NA    +  DK
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDK 142          
The following BLAST results are available for this feature:
BLAST of DY260430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF3_MOUSE6.506e-5881.69ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ... [more]
ARF3_HUMAN6.506e-5881.69ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
ARF3_BOVIN6.506e-5881.69ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARF5_CHICK1.110e-5782.71ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARF_ASHGO2.472e-5776.06ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARF4_PONAB1.602e-5677.46ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 ... [more]
ARF4_HUMAN1.602e-5677.46ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 ... [more]
ARF1_PLAFA3.570e-5673.24ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF4_RAT7.953e-5677.46ADP-ribosylation factor 4 OS=Rattus norvegicus GN=... [more]
ARF4_MOUSE7.953e-5677.46ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YH13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260430 ID=DY260430; Name=DY260430; organism=Citrus clementina; type=EST; length=1117bp
CTTAAGCAGCCTCCTTTTTCAGATCTCGTGAGATAACAGAAAATGGGGCT
GTCATTTACGAAACTTTTTAGCCGGCTTTTTGCCAAGAAAGAGATGCGAA
TTCTGATGGTGGGTCTCGACGCTGCTGGTAAGACCACCATTTTGTACAAG
CTCAAGCTCGGTGAGATTGTGACAACCATTCCTACCATTGGTTTCAACGT
GGAGACTGTGGAATATAAGAACATTAGCTTCACTGTTTGGGATGTTGGGG
GTCAGGATAAGATTCGTCCTTTGTGGAGACATTACTTCCAAAACACTCAA
GGACTTATCTTTGTGGTTGATAGCAATGATCGTGACCGTGTGGTTGAAGC
TAGAGATGAACTGCACCGGATGCTGAATGAGGATGAGTTGAGGGATGCTG
CGCTGCCTGTTTTACCCAACAAGCAAGATCGTACAAATGCCACGAACCGC
CCAAAGAACCCTGACAAGCATCGACCTCCTCCNCNNCNCCNNNCCCCCNC
CTNCTTCCCCCTCCTTCCTCCCCCTCTNCCTCTCCCCAACCAAACGCCTG
TACCGCCCCCTCATCCCTCTTCACCACTCAATCAACCCATACACACCCCC
TCCCCCACCCCCTCCGCAACGACCCATGCATAACCCTACCCACGCCTTTT
CTCACCCCATCGAATTCACCCCCCCTCTCCCCTCTCCCCCTTCCACACCC
ACCCGCGCTACCCCGACACACCTACCCTACCCCCCACCCCACCCCCTCCG
ACCCCACCTTCCCTCCCCACTCCTCCTCCCCCACCTCCTCATCGTAACCA
ATCTCTACAATATAACTCCTAACCACCTCCAACACAGCCCCTCCACAGCA
ATGTCACCACCCCCGCCACCCTCTAACCTCTTCACCCTATCCTCTCCTCC
ACCCTGAACACCTCCCCCAATCCCTCCTCATATCACAACACAAAATCCAC
ACACACCACACCACAAACGAATCCGACCCGTACCTCCACCTCAATCATCT
CGCACGCCCACTTATCACACCGCTCACCCCCAACCCCACATTCGCTTCAC
TCAAACATGACTCTATATCAGGCATCTAACCCCTCTATGCTGCCTATCCA
CGCCTCATCATACCTGA
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