DY260430

Overview
NameDY260430
Unique NameDY260430
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1117
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 2.314e-55
Identity = 103/142 (72.54%), Postives = 124/142 (87.32%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MGL  ++LF+RLF KK++RILMVGLDAAGKTTILYK+KLGE+VTTIPTIGFNVETVE++NISFTVWDVGGQDKIRPLWRHY+ NT GLIFVVDSNDR+R+ +AR+ LHRM+NE+EL+DA + V  NKQD  NA +  +  +K
Sbjct:    1 MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREGLHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEK 142          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 2.166e-53
Identity = 102/142 (71.83%), Postives = 119/142 (83.80%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MGL  +KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKNISFTVWDVGGQD+IR LWRHY++NT+G+IFVVDSNDR R+ EAR+ + RMLNEDELR+AA  V  NKQD   A +  +  +K
Sbjct:    1 MGLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEK 142          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 8.230e-53
Identity = 100/142 (70.42%), Postives = 118/142 (83.10%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPKNPDK 468
            MGL  +KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKNISFTVWDVGGQD+IR LWRHY++NT+G+IFV+DSNDR R+ EAR+ + RMLNEDELR+A   V  NKQD   A +  +  +K
Sbjct:    1 MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEK 142          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 2.927e-50
Identity = 97/135 (71.85%), Postives = 114/135 (84.44%), Query Frame = 1
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAALPVLPNKQDRTNA 441
            MG   +K+F +LF+KKE+RILMVGLDAAGKTTILYKL LGE+VTT+PTIGFNVETVEYKNI+FTVWDVGGQD IRPLWRHY+QNT  LI+V+DS D +  R+ +A++ELH +L EDELRDAAL V  NKQD   A
Sbjct:    1 MGQGASKIFGKLFSKKEVRILMVGLDAAGKTTILYKLMLGEVVTTVPTIGFNVETVEYKNINFTVWDVGGQDSIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGEDELRDAALLVFANKQDLPKA 135          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 4.227e-49
Identity = 92/127 (72.44%), Postives = 107/127 (84.25%), Query Frame = 1
Query:   61 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNA 441
            K+FS++F  KEMRILM GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA + +  NKQD  +A
Sbjct:    3 KMFSKIFGNKEMRILMRGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 129          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 195.282 bits (495), Expect = 5.520e-49
Identity = 92/127 (72.44%), Postives = 107/127 (84.25%), Query Frame = 1
Query:   61 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNA 441
            KL S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA + +  NKQD  +A
Sbjct:    3 KLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDA 129          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 9.416e-49
Identity = 91/127 (71.65%), Postives = 107/127 (84.25%), Query Frame = 1
Query:   61 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNA 441
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA + +  NKQD  +A
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 129          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 9.416e-49
Identity = 91/127 (71.65%), Postives = 107/127 (84.25%), Query Frame = 1
Query:   61 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNA 441
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA + +  NKQD  +A
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 129          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 9.416e-49
Identity = 91/127 (71.65%), Postives = 107/127 (84.25%), Query Frame = 1
Query:   61 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNA 441
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA + +  NKQD  +A
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 129          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 9.416e-49
Identity = 91/127 (71.65%), Postives = 107/127 (84.25%), Query Frame = 1
Query:   61 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNA 441
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA + +  NKQD  +A
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 129          
The following BLAST results are available for this feature:
BLAST of DY260430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF1_PLAFO2.314e-5572.54ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF1_YEAST2.166e-5371.83ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF2_YEAST8.230e-5370.42ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF_GIALA2.927e-5071.85ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF6_XENLA4.227e-4972.44ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARF3_DROME5.520e-4972.44ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF6_RAT9.416e-4971.65ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG9.416e-4971.65ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE9.416e-4971.65ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN9.416e-4971.65ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YH13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260430 ID=DY260430; Name=DY260430; organism=Citrus clementina; type=EST; length=1117bp
CTTAAGCAGCCTCCTTTTTCAGATCTCGTGAGATAACAGAAAATGGGGCT
GTCATTTACGAAACTTTTTAGCCGGCTTTTTGCCAAGAAAGAGATGCGAA
TTCTGATGGTGGGTCTCGACGCTGCTGGTAAGACCACCATTTTGTACAAG
CTCAAGCTCGGTGAGATTGTGACAACCATTCCTACCATTGGTTTCAACGT
GGAGACTGTGGAATATAAGAACATTAGCTTCACTGTTTGGGATGTTGGGG
GTCAGGATAAGATTCGTCCTTTGTGGAGACATTACTTCCAAAACACTCAA
GGACTTATCTTTGTGGTTGATAGCAATGATCGTGACCGTGTGGTTGAAGC
TAGAGATGAACTGCACCGGATGCTGAATGAGGATGAGTTGAGGGATGCTG
CGCTGCCTGTTTTACCCAACAAGCAAGATCGTACAAATGCCACGAACCGC
CCAAAGAACCCTGACAAGCATCGACCTCCTCCNCNNCNCCNNNCCCCCNC
CTNCTTCCCCCTCCTTCCTCCCCCTCTNCCTCTCCCCAACCAAACGCCTG
TACCGCCCCCTCATCCCTCTTCACCACTCAATCAACCCATACACACCCCC
TCCCCCACCCCCTCCGCAACGACCCATGCATAACCCTACCCACGCCTTTT
CTCACCCCATCGAATTCACCCCCCCTCTCCCCTCTCCCCCTTCCACACCC
ACCCGCGCTACCCCGACACACCTACCCTACCCCCCACCCCACCCCCTCCG
ACCCCACCTTCCCTCCCCACTCCTCCTCCCCCACCTCCTCATCGTAACCA
ATCTCTACAATATAACTCCTAACCACCTCCAACACAGCCCCTCCACAGCA
ATGTCACCACCCCCGCCACCCTCTAACCTCTTCACCCTATCCTCTCCTCC
ACCCTGAACACCTCCCCCAATCCCTCCTCATATCACAACACAAAATCCAC
ACACACCACACCACAAACGAATCCGACCCGTACCTCCACCTCAATCATCT
CGCACGCCCACTTATCACACCGCTCACCCCCAACCCCACATTCGCTTCAC
TCAAACATGACTCTATATCAGGCATCTAACCCCTCTATGCTGCCTATCCA
CGCCTCATCATACCTGA
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