DY260431

Overview
NameDY260431
Unique NameDY260431
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1253
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260431 vs. ExPASy Swiss-Prot
Match: SPY_HORVU (Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Hordeum vulgare GN=SPY PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.987e-17
Identity = 49/138 (35.51%), Postives = 72/138 (52.17%), Query Frame = 2
Query:   71 ARAFGNLTNTYNERGPAHVAILYYNQAIRCDPRFLEAYNNLGNALKDVGRVYEAVRCYNRCLSLQPNHPQTLTNLGNIYMEWNMLPAAATYYKATLTVTTRLSAPFNNLAVIYKQQGNYADAISCYNELLLIDPLAAN 484
            A A  NL   Y E     +AI++Y  A+  +PR  EA NNLG   KD   + +AV CY   LS++PN  Q+L NLG +Y     + AAA+  +  +      +  +NNL V+Y+  G+   ++  Y   L IDP + N
Sbjct:  286 ADAMYNLGVAYGEMLNFEMAIVFYELALHFNPRCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAYNNLGVLYRDAGSITLSVQAYERCLQIDPDSRN 423          
BLAST of DY260431 vs. ExPASy Swiss-Prot
Match: SPY_EUSGR (Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Eustoma grandiflorum GN=SPY PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.513e-16
Identity = 48/136 (35.29%), Postives = 70/136 (51.47%), Query Frame = 2
Query:   77 AFGNLTNTYNERGPAHVAILYYNQAIRCDPRFLEAYNNLGNALKDVGRVYEAVRCYNRCLSLQPNHPQTLTNLGNIYMEWNMLPAAATYYKATLTVTTRLSAPFNNLAVIYKQQGNYADAISCYNELLLIDPLAAN 484
            A  NL   Y E     +AI++   A   +P   EA NNLG   KD   + +AV CY + LS++PN  Q+L NLG ++     + AAA+  +  +      +  +NNL V+Y+  GN   AI  Y + L IDP + N
Sbjct:  274 AMYNLGVAYGEMLKFDMAIIFDELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQKALSIKPNFSQSLNNLGVVFTVQGKMDAAASMIEKAIVANPTYAEAYNNLGVLYRDAGNIFLAIEAYEQCLKIDPDSRN 409          

HSP 2 Score: 60.8474 bits (146), Expect = 2.317e-12
Identity = 48/166 (28.92%), Postives = 68/166 (40.96%), Query Frame = 2
Query:   29 AIVCYPRADPTRPN-ARAFGNLTNTYNERGPAHVAILYYNQAIRCDPRFLEAYNNLGNALKDVGR-------VYEAVRCYNRCLSLQPNHPQTLTNLGNIYMEWNMLPAAATYYKATLTVTTRLSAPFNNLAVIYKQQGNYADAISCYNELLLIDPLAANGLVHTG 502
            A+ CY RA    P  A A+ N    Y  RG   +A+          P F  A NN+G AL D+G        + + V  Y + L    ++   + NLG  Y E      A  + +         +   NNL VIYK + N   A+ CY + L I P  +  L + G
Sbjct:  191 ALSCYERAATESPTYADAYCNTGIIYKNRGDLCLAV---------SPNFEIAKNNMGIALTDLGTKEKLEGDIDQGVAYYKKALYYNWHYSDAMYNLGVAYGEMLKFDMAIIFDELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQKALSIKPNFSQSLNNLG 347          

HSP 3 Score: 33.113 bits (74), Expect = 2.317e-12
Identity = 15/39 (38.46%), Postives = 25/39 (64.10%), Query Frame = 3
Query:  573 PTMAEAHANLASTYKDSVHVEAAIKSYQRALLLSHDFPN 689
            PT AEA+ NL   Y+D+ ++  AI++Y++ L +  D  N
Sbjct:  371 PTYAEAYNNLGVLYRDAGNIFLAIEAYEQCLKIDPDSRN 409          
BLAST of DY260431 vs. ExPASy Swiss-Prot
Match: TMTC4_HUMAN (Transmembrane and TPR repeat-containing protein 4 OS=Homo sapiens GN=TMTC4 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.397e-11
Identity = 41/153 (26.80%), Postives = 72/153 (47.06%), Query Frame = 2
Query:   68 NARAFGNLTNTYNERGPAHVAILYYNQAIRCDPRFLEAYNNLGNALKDVGRVYEAVRCYNRCLSLQPNHPQTLTNLGNIYMEWNMLPAAATYYKATLTVTTRLSAPFNNLAVIYKQQGNYADAISCYNELLLIDP---LAANGLV----HTGN 505
            NA+   N+     ++G    AI YY +A+R +P+++ A NNLGN LK+   + EA    +  + +QP+      NLG +        AA   Y+  +    +    + NL  +Y     + DA++ +    ++ P   LA N ++    +TGN
Sbjct:  481 NAKVHYNIGKNLADKGNQTAAIRYYREAVRLNPKYVHAMNNLGNILKERNELQEAEELLSLAVQIQPDFAAAWMNLGIVQNSLKRFEAAEQSYRTAIKHRRKYPDCYYNLGRLYADLNRHVDALNAWRNATVLKPEHSLAWNNMIILLDNTGN 633          
The following BLAST results are available for this feature:
BLAST of DY260431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
SPY_HORVU4.987e-1735.51Probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]
SPY_EUSGR5.513e-1635.29Probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]
TMTC4_HUMAN2.397e-1126.80Transmembrane and TPR repeat-containing protein 4 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YH14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260431 ID=DY260431; Name=DY260431; organism=Citrus clementina; type=EST; length=1253bp
CCATAATGCTTTGTTTTTGCCCCAAGAGGCTATCGTGTGCTATCCGCGTG
CTGATCCTACACGTCCAAATGCCAGAGCTTTTGGTAACTTGACTAATACC
TACAATGAGCGAGGTCCAGCACACGTGGCAATCCTTTATTATAATCAAGC
GATCCGTTGTGATCCTCGATTTTTGGAGGCTTACAATAATTTGGGTAATG
CATTGAAAGATGTGGGCAGAGTCTATGAGGCAGTTCGATGCTATAATCGA
TGTCTTTCATTACAACCAAACCATCCACAAACACTTACCAATCTTGGAAA
TATATATATGGAATGGAACATGTTGCCTGCTGCTGCTACGTATTATAAAG
CTACCTTAACCGTAACAACACGATTGTCTGCCCCTTTCAACAATCTTGCT
GTCATATATAAACAACAGGGAAATTATGCAGATGCTATATCTTGCTACAA
TGAACTTCTTCTCATTGATCCTTTGGCCGCAAATGGACTGGTCCATACGG
GCAACACTTAGCAGGAGATTGATAGACGTGACTGATGCTCTCCTGGACTA
TATACGAGCTAACAACATCCCCCCCACCATGGCAGAAGCCCATGCTAATT
TGGCTTCCACCTACAAAGACAGTGTACATGTGGAAGCTGCCATAAAGAGC
TACCAACGGGCATTGCTTCTTTCACATGACTTCCCGAATCAACTTGTAAC
CTTCTGGCTACACCGCACTGTGTCTGCCGCCTGGAGGATCCTGATACAAT
GTTCCCCGAATTTGAGGGGATTAACCAGCAACGGTCCACATGTCAGTCCC
CCCTACCCTGGGGCCCTTTCAAGCAATACTTACCCCTTTGACCCAAGCCT
TGCCCTTGAATTAACCCTAAAAAACCATCCATTGCCTCAAAAATTGCTTC
CCCTTTGCCCTCCCCTCTTTCCACCCACCCGGCCCAATTTCCTTTAGGGG
TGAAAGGTGAAATCCCAAAAATAAGGGGGGGGGGATGTAACCCCTCCATT
TAGAAAACCCCCCCCTTTCCCCCCTTAAGGGAAACCCTCTTTTGGGGCGC
CCCACAAAAAAAAAAAAAGTTTTGTAGGATTTCCCGTTTATACCTTTTCA
ACCCCCCCCAGGGGTGAGTCCACCAAAAACGGAACCCCCGCCCCCCCCCC
CCCCCTTCTTCTAGACCGCAAAAACTACTTTTTTTTTTTTGTTTCTCTCC
CCCCCCCCCTTTACCACCCCTCATCACCTAAAAACAGTGACAAATCGTCA
AAC
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