DY260433

Overview
NameDY260433
Unique NameDY260433
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260433_ssr1180 microsatellite DY260433_ssr1180:1180..1189. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1527 contig Ccv1_Contig1527:1..1283. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRI_PROM9 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9312) GN=petC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 9.099e-14
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN +    WL TH  GDR+L +GLK
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLATHQAGDRSLVQGLK 84          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRI_PROM2 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9215) GN=petC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.188e-13
Identity = 39/83 (46.99%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            T + +  VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN I    WL TH  GDR+L +GLK
Sbjct:    2 TQLSSKDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLK 84          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRI_PROMA (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus GN=petC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.027e-13
Identity = 40/80 (50.00%), Postives = 48/80 (60.00%), Query Frame = 3
Query:  168 PADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            P+D VP MG+RQ MNLL  G  +      L P A FF P   G   GGTTAKD +GN + A  WL+ H  GDR+L +GLK
Sbjct:    6 PSD-VPSMGRRQFMNLLTFGTATGVALGALYPVANFFMPLRAGGGTGGTTAKDELGNAVTATGWLSNHPAGDRSLVQGLK 84          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRI_PROMP (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=petC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.647e-13
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN +    WL +H  GDR+L +GLK
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLASHQAGDRSLVQGLK 84          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRI_PROM5 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9515) GN=petC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.457e-13
Identity = 37/83 (44.58%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN +    WL  H  GDR+L +GLK
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLANHQAGDRSLVQGLK 84          
The following BLAST results are available for this feature:
BLAST of DY260433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
UCRI_PROM99.099e-1445.78Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM21.188e-1346.99Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMA2.027e-1350.00Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMP2.647e-1344.58Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM53.457e-1344.58Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YH16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260433 ID=DY260433; Name=DY260433; organism=Citrus clementina; type=EST; length=1283bp
CAATGGCTTCCTCCTCTTCTCTCTCCTCAGCAACTCCTTCTCAGCTATGC
TCAAGCAAGAGTGGTATGTTCTGTCCATCGAGAGCTTTTCTTGTGAAACC
AGCAAGGACCCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAGT
GCCAGGCTACAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAGG
CAGCTCATGAATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGATT
TATGTTGGTTCCTTATGCGACCTTCTTTGCCCCACCTGGTTTAGGAAGTG
CTGGTGGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCC
GCTGATTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGG
ATTGAAGGTACAAATCAATTTCTTTGAAAATTATTGCTTAGTTCATTGCA
AACTTGACTCTTGGTTCTAAAAAACTTAATAAATTGTCATGAGATAATCT
GCAATTGCCATGAACCTCAATTTTTGGTTGTGTTTACACGTGAAGCAGGA
TTTCTCACATTTGCCACTTATTCTGTAGCCCCAATTGTGAACTCCTTCCC
CTGAATGCTGGAGTTTTCTCGTACGTGAAAGGTCGCTCTACAAGTAGATT
CATAAGGAGATCCCACCCTACCTTGTTGTGGAAAAAGACAAAACACCTTG
CATCCAAGGGAATCCATGCCGTCCGCCCTCCCCCTTGAAGTGGGGTGCCC
TGGGAATTCACCTGAGAACAAATTCCCCCGGCCCCGGCCCCGAATCCCCA
TAACAATACCCAGGAAAAATTGGTGAAAAGGCCCGCCCCCTTGTCCTTGG
CACTTGGGCCCCAGCCCACCATTGAAAAAGGGAAAGGGACTCCTCCCTTC
CCCGGAACCGAAAAACAAATTTCCAAACGGGGGAAACCCCCCGGGGGGGC
CTAAAAAACCTTGTTCCCGGGCCCCCGCCCTTCCAAAAATCCAAATTTTT
TGGCCCCGGCGCGGTTTTCCTCTTCCGCCACCCCCCCAAAAACCAACCTG
GAAACGCAAAACCCGCCTATTCACAAAAAAAAGCTCATACAACAAAGAAA
AAACATCCCCTCGGGCCTGAACCCCACCCCCCCTCCCTGGGAACCCCGCG
GGCCAACCTTCGAAAACCATTTTTTCCCCCTCTCTCTCTCCCCTCCCTTT
CTCCTTGTTACTCCCCACCACAAACACCCCTTCACACCCCCCCCACCCCA
CCAAAGGGCGTCGGCAGGCTGCCCCCCCCCCGC
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