DY260437

Overview
NameDY260437
Unique NameDY260437
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1252
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO1_PETHY (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Petunia hybrida GN=ACO1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.832e-12
Identity = 34/106 (32.08%), Postives = 62/106 (58.49%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQ---SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            ++  L+ LA  L+  + + L ++   L+  F          +++ YPPCP+P+ + GL  H+D   + +L Q ++V GLQ+  DG+WI + P+ ++ +VN+GD LE
Sbjct:  117 FAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLE 222          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.832e-12
Identity = 35/107 (32.71%), Postives = 64/107 (59.81%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQS----MRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            ++ EL++LA  L+  + + L ++   L + F     +     +++ YPPCP+P+ V GL  H+D   + +L Q + V GLQ+  DG+W+ + P+ ++ +VN+GD LE
Sbjct:  122 FAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVEGLRAHTDAGGIILLFQDDRVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLE 228          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO_TOBAC (1-aminocyclopropane-1-carboxylate oxidase OS=Nicotiana tabacum GN=ACO PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.698e-12
Identity = 36/107 (33.64%), Postives = 64/107 (59.81%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDN----GFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            ++  L+ LA  L+  + + L ++   L++ F       F S +++ YPPCP+P+ + GL  H+D   + +L Q ++V GLQ+  DG+WI + P+  + +VN+GD LE
Sbjct:  117 FAKRLEKLAEELLDLLCENLGLEKGYLKKIFYGTKGPNFGS-KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGQWIDVPPMRLSIVVNLGDQLE 222          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: FLS_MATIN (Flavonol synthase/flavanone 3-hydroxylase (Fragment) OS=Matthiola incana PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.830e-12
Identity = 38/105 (36.19%), Postives = 64/105 (60.95%), Query Frame = 2
Query:    2 EVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNG-FQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTL 313
            E Y+  +K+L+  ++  + + L +  E ++E   NG +  M +N+YPP P  +   GL PH+D + LT+++  NE+ GLQ+  D  WI +  +P+A IVNIGD +
Sbjct:  117 EEYARHVKTLSEKIMEWLSEGLGLGREAIKEV--NGCWYVMNINHYPPYPHSDSFNGLEPHTDINGLTLIIT-NEIPGLQVFKDDHWIEVEYIPSAIIVNIGDQI 218          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.830e-12
Identity = 35/107 (32.71%), Postives = 65/107 (60.75%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQS----MRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            +   L++LA +L+  + + L ++   L++ F +G +      +++ YP CP+PE + GL  H+D   + +L Q ++V GLQ+  DG WI + PL ++ ++N+GD LE
Sbjct:  120 FGKRLENLAEDLLDLLCENLGLEKGYLKKVF-HGTKGPTFGTKVSNYPACPKPEMIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGDWIDVPPLNHSIVINLGDQLE 225          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 4.830e-12
Identity = 32/106 (30.19%), Postives = 64/106 (60.38%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQ---SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            ++ +++ L+  L+  + + L ++   L++ F    +     +++ YPPCP P+ V GL  H+D   + +L Q ++V GLQ+  DG+W+ + P+ ++ +VN+GD LE
Sbjct:  117 FAGKIEKLSEELLDLLCENLGLEKGYLKKVFYGSKRPTFGTKVSNYPPCPNPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPVKHSIVVNLGDQLE 222          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 6.308e-12
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            YS  +++L + L   + + L +K   L E        +  +YYP CPQPE   G + HSD   LTIL+Q +++ GLQI  + +WI +  +P A ++NI D L+
Sbjct:  211 YSNYVRNLGLILFELLSEALGLKPNHLEEMDCAEGLILLGHYYPACPQPELTFGTSKHSDSGFLTILMQ-DQIGGLQILLENQWIDVPFIPGALVINIADLLQ 312          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO_DIACA (Probable 1-aminocyclopropane-1-carboxylate oxidase OS=Dianthus caryophyllus GN=ACO PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.308e-12
Identity = 31/106 (29.25%), Postives = 63/106 (59.43%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFF---DNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            ++ +++ L+  L+  + + L ++   L+  F   +      +++ YPPCP+P+ + GL  H+D   + +L Q ++V GLQ+  DG W+ + P+ ++ +VN+GD LE
Sbjct:  123 FAAQIERLSEQLLDLLCENLGLEKAYLKNAFYGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGHWVDVPPMKHSIVVNLGDQLE 228          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.835e-11
Identity = 39/103 (37.86%), Postives = 54/103 (52.43%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            YS E+  LA  +   + + L +    L+E        M  + +PPCP+P +  G   H+D S LTILL  N   GLQ+  DG WI + P P A I N+GD L+
Sbjct:  174 YSKEVMKLAELMFEILSEALGLSPNHLKEMDCAKGLWMLCHCFPPCPEPNRTFGGAQHTDRSFLTILLNDNN-GGLQVLYDGYWIDVPPNPEALIFNVGDFLQ 275          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO4_PETHY (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Petunia hybrida GN=ACO4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.835e-11
Identity = 32/106 (30.19%), Postives = 62/106 (58.49%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQ---SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            ++  L+ LA  L+  + + L ++   L++ F          +++ YPPCP+P+ + GL  H+D   + +L Q ++V GLQ+  D +WI + P+ ++ ++N+GD LE
Sbjct:  117 FAKRLEKLAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMRHSIVINLGDQLE 222          
The following BLAST results are available for this feature:
BLAST of DY260437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ACCO1_PETHY2.832e-1232.081-aminocyclopropane-1-carboxylate oxidase 1 OS=Pet... [more]
ACCO1_ORYSJ2.832e-1232.711-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO_TOBAC3.698e-1233.641-aminocyclopropane-1-carboxylate oxidase OS=Nicot... [more]
FLS_MATIN4.830e-1236.19Flavonol synthase/flavanone 3-hydroxylase (Fragmen... [more]
ACCO1_BRAJU4.830e-1232.711-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
ACCO1_ARATH4.830e-1230.191-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
DV4H_CATRO6.308e-1235.92Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
ACCO_DIACA6.308e-1229.25Probable 1-aminocyclopropane-1-carboxylate oxidase... [more]
GSL_ARATH1.835e-1137.86Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
ACCO4_PETHY1.835e-1130.191-aminocyclopropane-1-carboxylate oxidase 4 OS=Pet... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YH20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260437 ID=DY260437; Name=DY260437; organism=Citrus clementina; type=EST; length=1252bp
GGAAGTTTACTCAATGGAGTTAAAATCTTTGGCCATGAACCTGATATCGA
AAATGGGAAAAGTTTTAAATATCAAAGATGAAGAATTGAGAGAATTCTTT
GACAATGGTTTCCAATCAATGAGGATGAACTATTACCCTCCATGTCCTCA
GCCAGAAAAGGTTATGGGCCTCACCCCTCATTCTGATGGCTCTGCTCTTA
CCATTCTGCTACAAATCAATGAAGTAGAAGGTCTCCAGATCAAGAACGAT
GGAAAATGGATTCCTATCACACCGCTGCCAAATGCTTTCATTGTCAACAT
CGGAGACACATTAGAGCATTGAGCATCGTGCAATTGTGAACTCTATACAA
GAAAGACTTTCCATTGCCACATTTTACACAAAGAGATTAGATGGTGAAAT
ATATCCAGCATCCAGTTTGATATCTGAAAAAACTCCTGCATTGTTTCGAA
GAGTGACGGTTGAAGAATACTTTAGGAGCCGATTTGCTCGTGAGCTTAGG
GGAAAATCTCACCTGGATGACCTGAGAATTCAACATGGTCGAGGCTAGCA
TAAATTATTTTGGATAGTTGCAGATTTGTGCCAGGGAATTTTCTGATGAT
AATTGTGCTTATTTTGGACCCGTGTCCTTTCATTTTTGGAATAAAATTTT
TGCCGGCCTTGTCAGTTTTTTATCAGATTTCCAAGACACATTTTCCCTTA
AAAAAAAAAAAAAAAAAAAAAAACCCCCACTTTCTTGGAAAAAGTTGGGA
TCAATAAAAAAGCCTTTGCCTTACCATTTTGTTGGCACTAAACGGGTCCA
CCATCCATACAAAAAAAAAACCATTTTTTTCCCCCCACCCCCAGAAACAC
CCCCCCATAGGTGATTCAACATAACCTGGCCACAACCTTTTTTCCGCCTC
CCCCCCCCGCGCCCGCCTCCCCAAAAACCTCAAATGTGACACTCCTCCCC
ACTAAAACAAACCTCTCTCTCACTCTCTGTAACTAAAACCCTCTTGCGTC
CTTCGACACACCAACAGCCAAACTTTCTCTCCATACACCGATAGAACACT
CACTCCCCTTCATCATTCAAAAAAAAACCTGCTCTTTCCTCAAATAGCCA
GACAACAACACCAACCCCAACGAGCGGCACTATACTATCACAAAGCATGG
CCACCGCACCCGCGCGCGCACACGCACACCACCCAACTCTACGCACCCCC
TCCCTCCTCATCGCTCGCTAACAATATAACCCCGACGTCAACCACCGGTC
TT
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