DY260441

Overview
NameDY260441
Unique NameDY260441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1052
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA3_YEAST (Proteasome component C1 OS=Saccharomyces cerevisiae GN=PRE10 PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 2.210e-44
Identity = 95/205 (46.34%), Postives = 120/205 (58.54%), Query Frame = 2
Query:   71 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGK 685
            M+SIGTGYDLS + FSPDGR FQ+EYA KAV+N                             T IGIKC DG+V  VEKLI SK+++P  N +I  V RH G   +GL  DGR +V R + EA +++ +Y  PIP+   A R+  YV   TLY  +RPFG   I GG D++G  LYM+EPSG  + Y G A GKGR +AK E+ K
Sbjct:    1 MTSIGTGYDLSNSVFSPDGRNFQVEYAVKAVENG---------------------------TTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEK 178          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA3_SCHPO (Probable proteasome subunit alpha type-3 OS=Schizosaccharomyces pombe GN=SPCC1795.04c PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 4.169e-43
Identity = 93/205 (45.37%), Postives = 123/205 (60.00%), Query Frame = 2
Query:   71 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGK 685
            MSSIGTGYDL +  FSPDGR+FQ EYA KAV+N+                            T IGIKC+DG+++ +EK++ SK++ P  N RI SV RH G+A  G   DG+ IV RA+ EAT++   YG PIP   +A R+ +YV L T Y  +RPFG    +  YD +GP LYM+EP+G+ + Y G A GKGR  A+ E+ K
Sbjct:    1 MSSIGTGYDLGLF-FSPDGRLFQAEYAYKAVENAS---------------------------TCIGIKCEDGVILALEKVVTSKLLKPRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYDSEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEK 177          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA3_CAEEL (Proteasome subunit alpha type-3 OS=Caenorhabditis elegans GN=pas-7 PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 6.446e-36
Identity = 86/208 (41.35%), Postives = 124/208 (59.62%), Query Frame = 2
Query:   71 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFE 691
            MSSIGTGYDL+ +TFSPDGR+FQ+EYA KAVDN+G                           T+I I+ K+G+V+  +KLI+SK+    +N R+ +V+ + G+AVAG   DG  +   A  EA  +   Y EP+P++ +A  VA Y+H+ TL    RPFG G     +++  G +L+++EPSG++Y Y   A+GK R AAK EI K +
Sbjct:    1 MSSIGTGYDLAASTFSPDGRIFQVEYAQKAVDNAG---------------------------TMIAIRGKNGVVVVADKLISSKLYTDNANPRMFNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHTL-GISRPFGAGAFFMSWNKQTGGRLFLVEPSGLNYEYKAWAVGKHRQAAKAEIEKLK 180          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 6.243e-31
Identity = 79/227 (34.80%), Postives = 115/227 (50.66%), Query Frame = 2
Query:   86 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFEAFRNDLPNKGFIELPKNHLRRCPNE 766
            T YD ++T FSPDGR+FQ+EYA +AV                               T +GIK ++G+V+GV+K + SK++ P S  +++ +  H G A AGL AD R +V RA+ EA  Y   YGEPI V  L + +     + T +  +RPFG  +++ G D  G +L+  +PSG    +  TAIG+GR  A       E +R D+  +  IEL    L     E
Sbjct:    8 TAYDRAITVFSPDGRLFQVEYAREAVKRG---------------------------TTALGIKVEEGVVLGVDKRVTSKLIEPESIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVDTKGCRLFETDPSGALTEHKATAIGEGRQEALDVFE--EEYREDMTLQEAIELAVRALYEASRE 205          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 3.099e-30
Identity = 79/215 (36.74%), Postives = 113/215 (52.56%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFEAFRNDLPNKGFIEL 733
            GYD ++T FSPDGR+FQ+EYA +AV                               T +G+K K+GIV+ V+K   SK++ P S  +I  +  H G A +GL AD R I+ +A+ EA      Y EPI V+ LA+++     + T +  +RPFG  +I+GG +  G +L+  +PSG    Y  TAIG GRPAA  E  K   + +D+     IEL
Sbjct:    8 GYDRAITVFSPDGRLFQVEYAREAVKRG---------------------------TTSLGVKSKEGIVLVVDKRPTSKLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYTQHGGVRPFGTALIIGGVNGRGCRLFETDPSGALIEYKATAIGAGRPAAMEEFEK--KYSDDMNLNQAIEL 193          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 9.016e-30
Identity = 68/193 (35.23%), Postives = 104/193 (53.89%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAA 667
            GYD ++T FSPDGR+FQ++YA +AV                               T +G+KCKDG+V+ VEK + SK++ P S  +I  +  H   A +G+ AD R +V RA+ EA  Y   YGEP+P+  L +++     + T Y  +RPFG  +++ G + + P+L+  +PSG  + +   AIG GR  A
Sbjct:    9 GYDRAITVFSPDGRLFQVQYAREAVKRGA---------------------------TAVGVKCKDGVVLAVEKRVTSKLIEPESYEKIFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMHTQYGGVRPFGAALLMAGVN-EKPELFETDPSGAYFEWKAVAIGSGRNTA 173          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_ARCFU (Proteasome subunit alpha OS=Archaeoglobus fulgidus GN=psmA PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.177e-29
Identity = 77/207 (37.20%), Postives = 112/207 (54.11%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFEAFRNDL 709
            GYD ++T FSPDGR+FQ+EYA +AV                               T IGIKCK+G+++  +K + SK++   +  +I+ +  H   A +GL AD R ++ RA+ EA      Y EPI VKELA+++  +    T Y  +RPFG  +++ G D + P+LY  +PSG    Y  TAIG GR A  TE  + E +R+DL
Sbjct:    7 GYDRAITVFSPDGRLFQVEYAREAVKRGA---------------------------TAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVD-EVPKLYETDPSGALLEYKATAIGMGRNAV-TEFFEKE-YRDDL 183          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.538e-29
Identity = 76/216 (35.19%), Postives = 113/216 (52.31%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFE-AFRNDLPNKGFIEL 733
            GYD ++T FSPDGR+FQ+ YA +AV                               T +G+K K+G+V+ VEK I SK++ P S  +I  +  H   A +G+ AD R +V RA+ EA  Y   YGEP+P+  L +++       T Y  +RPFG  +++ G + D P+LY  +PSG  + +   AIG GR    T +  FE  + +DL  +G I+L
Sbjct:    9 GYDRAITVFSPDGRLFQVNYAREAVKRGA---------------------------TAVGVKWKEGVVLAVEKRITSKLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVN-DKPELYETDPSGAYFEWRAVAIGSGR---NTAMAIFEDHYSDDLDMEGAIKL 193          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.623e-29
Identity = 73/215 (33.95%), Postives = 111/215 (51.63%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFEAFRNDLPNKGFIEL 733
            GYD ++T FSPDGR+FQ+ YA +AV                               T +G+KC +G+V+ VEK I S+++ P S  +I  +  H   A +G+ AD R +V RA+ EA  Y   YGEP PV  + +++     + T Y  +RPFG  +++ G + D P+LY  +PSG  + +   AIG GR  A       E +R+D+  +  I+L
Sbjct:    9 GYDRAITVFSPDGRLFQVNYAREAVKRGA---------------------------TAVGVKCGEGVVLAVEKRITSRLIEPDSYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMHTQYGGVRPFGAALLMAGIN-DRPELYETDPSGAYFAWKAVAIGSGRNTAMAIFE--EKYRDDMNLEDAIKL 193          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.474e-29
Identity = 72/208 (34.62%), Postives = 110/208 (52.88%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFE-AFRNDL 709
            GYD ++T FSPDGR+FQ+ YA +AV                               T +G+KCKDG+V+ VEK I S+++ P S  +I  +  H   A +G+ AD R +V RA+ EA  +   YGEP P+  + +++     + T Y  +RPFG  +++ G + D P+LY  +PSG  + +   AIG GR    T +  FE  +R+D+
Sbjct:    9 GYDRAITVFSPDGRLFQVNYAREAVKRGA---------------------------TAVGVKCKDGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVN-DKPELYETDPSGAYFAWKAVAIGSGR---NTAMAIFEDKYRDDM 185          
The following BLAST results are available for this feature:
BLAST of DY260441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA3_YEAST2.210e-4446.34Proteasome component C1 OS=Saccharomyces cerevisia... [more]
PSA3_SCHPO4.169e-4345.37Probable proteasome subunit alpha type-3 OS=Schizo... [more]
PSA3_CAEEL6.446e-3641.35Proteasome subunit alpha type-3 OS=Caenorhabditis ... [more]
PSMA_METKA6.243e-3134.80Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSMA_METTH3.099e-3036.74Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSMA_THESM9.016e-3035.23Proteasome subunit alpha OS=Thermococcus sibiricus... [more]
PSMA_ARCFU1.177e-2937.20Proteasome subunit alpha OS=Archaeoglobus fulgidus... [more]
PSMA_THEON1.538e-2935.19Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSMA_PYRFU2.623e-2933.95Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]
PSMA_PYRAB4.474e-2934.62Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YH24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260441 ID=DY260441; Name=DY260441; organism=Citrus clementina; type=EST; length=1052bp
CGCTTTCTCAGTAGAAGGGAAAGGGAAATCAAATTGACTCAAAAATCGAA
AAAGAAAGAAGAGAGCAAGCATGAGCAGCATAGGCACAGGCTACGATCTG
TCGGTGACCACATTCTCTCCCGACGGTCGCGTTTTCCAGATCGAATACGC
CGCCAAAGCCGTCGACAACAGCGGGTAGGTTAACTCACTCTCTCTTTCGC
TCTTTTTTTTATTCTCCATTCTTAATATCCTTATTTTTTCAATCTTCGCT
CGCAGGACTGTGATTGGAATTAAATGCAAAGATGGCATCGTTATGGGAGT
GGAGAAGCTAATAGCGTCGAAGATGATGTTGCCTGGTTCCAATAGAAGAA
TCCATTCCGTTCATCGTCACTCCGGCATGGCTGTTGCAGGATTAGCAGCA
GATGGGAGACAAATTGTTACCAGGGCCAAGTCTGAAGCTACAAACTATGA
AAGTGTATATGGCGAACCAATTCCTGTTAAAGAACTTGCTCAACGAGTTG
CTAGCTATGTGCATCTATGTACTCTATATTGGTGGCTCAGACCTTTTGGA
TGTGGTGTAATTCTTGGAGGTTATGACAGAGATGGACCGCAATTGTATAT
GATTGAACCTTCTGGTATCTCCTATAGGTATTTTGGAACTGCAATTGGAA
AGGGCAGGCCAGCCGCTAAAACCGAGATTGGAAAATTTGAAGCTTTTCGA
AATGACCTGCCCAACAAGGGGTTCATTGAATTACCCAAGAACCATTTAAG
GAGGTGCCCGAATGAGGCCTAAGGCAAGGGCCTTTGAACTTGGAAATGGA
CCGGGGTCCGTGAAGAATCCAAACCCCCCCCCACCCAAAGGGTACAAAAA
GAACCTTTTTGAAGGGAAAACAAAGGCCAGCCCCCCCCAAACCCCCCTTT
GGAAAAAAAGGGTGGCAAATTATTGGACCCAAAATTCAAAAAATTTTGTT
TTCTACTTTTGCTGCCCCCTTTCAAGGCCCTTCCCCGCAAACAATCTTTC
CCACCAATTTTTCAAAAAAATATAAACAAACAAGGGGGGAACCTCTCCCC
TC
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