DY260441

Overview
NameDY260441
Unique NameDY260441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1052
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_THEK1 (Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.632e-29
Identity = 80/254 (31.50%), Postives = 124/254 (48.82%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFEAFRNDLPNKGFIELPKNHLRRCPNEA*GKGL*TWKWTGVREESKPPPTQRVQK 850
            GYD ++T FSPDGR+FQ+ YA +AV                               T +G+K KDG+V+ VEK I SK++ P S  +I  +  H   A +G+ AD R +V RA+ EA  Y   YGEP+P+  L +++       T Y  +RPFG  +++ G + + P+L+  +PSG  + +   AIG GR  A       E +R+D+     I+L    L +   E   +G+     T   +  K  P + ++K
Sbjct:    9 GYDRAITVFSPDGRLFQVNYAREAVKRGA---------------------------TAVGVKWKDGVVLAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVN-EKPELFETDPSGAYFEWKAVAIGSGRNTAMAIFE--EHYRDDIGKDDAIKLAILALAKTLEEPTAEGIEVAYITMDEKRWKKLPREELEK 232          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_PYRKO (Proteasome subunit alpha OS=Pyrococcus kodakaraensis GN=psmA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.632e-29
Identity = 80/254 (31.50%), Postives = 124/254 (48.82%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFEAFRNDLPNKGFIELPKNHLRRCPNEA*GKGL*TWKWTGVREESKPPPTQRVQK 850
            GYD ++T FSPDGR+FQ+ YA +AV                               T +G+K KDG+V+ VEK I SK++ P S  +I  +  H   A +G+ AD R +V RA+ EA  Y   YGEP+P+  L +++       T Y  +RPFG  +++ G + + P+L+  +PSG  + +   AIG GR  A       E +R+D+     I+L    L +   E   +G+     T   +  K  P + ++K
Sbjct:    9 GYDRAITVFSPDGRLFQVNYAREAVKRGA---------------------------TAVGVKWKDGVVLAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVN-EKPELFETDPSGAYFEWKAVAIGSGRNTAMAIFE--EHYRDDIGKDDAIKLAILALAKTLEEPTAEGIEVAYITMDEKRWKKLPREELEK 232          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_THEGJ (Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.900e-28
Identity = 72/215 (33.49%), Postives = 110/215 (51.16%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFEAFRNDLPNKGFIEL 733
            GYD ++T FSPDGR+FQ+ YA +AV                               T +G+K K G+V+ VEK I S+++ P S  +I  +  H   A +G+ AD R +V RA+ EA  Y   YGEP+P+  L +++       T Y  +RPFG  +++ G + + P+LY  +PSG  + +   AIG GR  A       E + +D+  +G I+L
Sbjct:    9 GYDRAITVFSPDGRLFQVNYAREAVKRGA---------------------------TAVGVKWKGGVVLAVEKRITSRLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVN-EKPELYETDPSGAYFEWKAVAIGSGRNTAMAIFE--EHYSDDIDMEGAIKL 193          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 8.438e-28
Identity = 71/216 (32.87%), Postives = 111/216 (51.39%), Query Frame = 2
Query:   86 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFEAFRNDLPNKGFIEL 733
            + YD ++T FSP+GR++Q+EYA +AV                               T IGI CKDG+V+ V++ I SK++   S  +I  +  H   A +GL AD R ++ RA+ EA  Y   YGE I ++ LA+++       T +  +RPFG  +++ G D++  +L+  +PSG    Y  TAIG GRP     + K   +R+D+     +EL
Sbjct:    7 SAYDRAITVFSPEGRLYQVEYAREAVRRG---------------------------TTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEK--EYRDDITLDEGLEL 193          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_METAC (Proteasome subunit alpha OS=Methanosarcina acetivorans GN=psmA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.102e-27
Identity = 73/208 (35.10%), Postives = 109/208 (52.40%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFEA-FRNDL 709
            GYD ++T FSPDGR+FQ+EYA +AV                               T +GIK  DG+V+ V+K I S+++   S  +I  +  H G A +GL AD R +V RA+ EA      Y EPI V+ +++++  +    T Y  +RP+G  +++ G D + P+L+  +PSG    Y  TAIG GR A    +  FEA +R D+
Sbjct:    6 GYDRAITVFSPDGRLFQVEYAREAVKRG---------------------------TTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDEHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNKPRLFETDPSGALLEYKATAIGAGRNAV---VEVFEADYREDM 183          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.439e-27
Identity = 69/215 (32.09%), Postives = 111/215 (51.63%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFEAFRNDLPNKGFIEL 733
            GYD ++T FSPDGR+FQ+ YA +AV                               T +G+KC +G+V+ VEK I S+++ P S  +I  +  H   A +G+ AD R +V RA+ EA  +   YGEP P+  + +++     + T Y  +RPFG  +++ G + + P+LY  +PSG  + +   AIG GR  A       E +++D+  +  I+L
Sbjct:    9 GYDRAITVFSPDGRLFQVNYAREAVKRGA---------------------------TAVGVKCNEGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVN-EKPELYETDPSGAYFAWKAVAIGSGRNTAMAIFE--EKYKDDMSLEEAIKL 193          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.439e-27
Identity = 69/194 (35.57%), Postives = 101/194 (52.06%), Query Frame = 2
Query:   86 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAA 667
            +GYD ++T FSP+GR++Q+EYA +AV                               T +GIKCKDG+V+ V++ I SK++   S  +I  +  H   A +GL AD R ++ RA+ EA      YGE I V+ LA+++       T +   RPFG  +++ G DR   +L+  +PSG    Y  TAIG GRP A
Sbjct:    8 SGYDRAITIFSPEGRLYQVEYAREAVRRG---------------------------TTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIA 174          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.439e-27
Identity = 69/194 (35.57%), Postives = 101/194 (52.06%), Query Frame = 2
Query:   86 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAA 667
            +GYD ++T FSP+GR++Q+EYA +AV                               T +GIKCKDG+V+ V++ I SK++   S  +I  +  H   A +GL AD R ++ RA+ EA      YGE I V+ LA+++       T +   RPFG  +++ G DR   +L+  +PSG    Y  TAIG GRP A
Sbjct:    8 SGYDRAITIFSPEGRLYQVEYAREAVRRG---------------------------TTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIA 174          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.439e-27
Identity = 69/194 (35.57%), Postives = 101/194 (52.06%), Query Frame = 2
Query:   86 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAA 667
            +GYD ++T FSP+GR++Q+EYA +AV                               T +GIKCKDG+V+ V++ I SK++   S  +I  +  H   A +GL AD R ++ RA+ EA      YGE I V+ LA+++       T +   RPFG  +++ G DR   +L+  +PSG    Y  TAIG GRP A
Sbjct:    8 SGYDRAITIFSPEGRLYQVEYAREAVRRG---------------------------TTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIA 174          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_METVS (Proteasome subunit alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.880e-27
Identity = 69/194 (35.57%), Postives = 101/194 (52.06%), Query Frame = 2
Query:   86 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAA 667
            +GYD ++T FSP+GR++Q+EYA +AV                               T +GIKCKDG+V+ V++ I SK++   S  +I  +  H   A +GL AD R ++ RA+ EA      YGE I V+ LA+++       T +   RPFG  +++ G DR   +L+  +PSG    Y  TAIG GRP A
Sbjct:    8 SGYDRAITIFSPEGRLYQVEYAREAVRRG---------------------------TTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARVEAQVNRISYGEAITVEALAKKICDIKQAYTHHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPVA 174          
The following BLAST results are available for this feature:
BLAST of DY260441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSMA_THEK17.632e-2931.50Proteasome subunit alpha OS=Thermococcus sp. (stra... [more]
PSMA_PYRKO7.632e-2931.50Proteasome subunit alpha OS=Pyrococcus kodakaraens... [more]
PSMA_THEGJ2.900e-2833.49Proteasome subunit alpha OS=Thermococcus gammatole... [more]
PSMA_METJA8.438e-2832.87Proteasome subunit alpha OS=Methanocaldococcus jan... [more]
PSMA_METAC1.102e-2735.10Proteasome subunit alpha OS=Methanosarcina acetivo... [more]
PSMA_PYRHO1.439e-2732.09Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]
PSMA_METMP1.439e-2735.57Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM71.439e-2735.57Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM51.439e-2735.57Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METVS1.880e-2735.57Proteasome subunit alpha OS=Methanococcus vannieli... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YH24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260441 ID=DY260441; Name=DY260441; organism=Citrus clementina; type=EST; length=1052bp
CGCTTTCTCAGTAGAAGGGAAAGGGAAATCAAATTGACTCAAAAATCGAA
AAAGAAAGAAGAGAGCAAGCATGAGCAGCATAGGCACAGGCTACGATCTG
TCGGTGACCACATTCTCTCCCGACGGTCGCGTTTTCCAGATCGAATACGC
CGCCAAAGCCGTCGACAACAGCGGGTAGGTTAACTCACTCTCTCTTTCGC
TCTTTTTTTTATTCTCCATTCTTAATATCCTTATTTTTTCAATCTTCGCT
CGCAGGACTGTGATTGGAATTAAATGCAAAGATGGCATCGTTATGGGAGT
GGAGAAGCTAATAGCGTCGAAGATGATGTTGCCTGGTTCCAATAGAAGAA
TCCATTCCGTTCATCGTCACTCCGGCATGGCTGTTGCAGGATTAGCAGCA
GATGGGAGACAAATTGTTACCAGGGCCAAGTCTGAAGCTACAAACTATGA
AAGTGTATATGGCGAACCAATTCCTGTTAAAGAACTTGCTCAACGAGTTG
CTAGCTATGTGCATCTATGTACTCTATATTGGTGGCTCAGACCTTTTGGA
TGTGGTGTAATTCTTGGAGGTTATGACAGAGATGGACCGCAATTGTATAT
GATTGAACCTTCTGGTATCTCCTATAGGTATTTTGGAACTGCAATTGGAA
AGGGCAGGCCAGCCGCTAAAACCGAGATTGGAAAATTTGAAGCTTTTCGA
AATGACCTGCCCAACAAGGGGTTCATTGAATTACCCAAGAACCATTTAAG
GAGGTGCCCGAATGAGGCCTAAGGCAAGGGCCTTTGAACTTGGAAATGGA
CCGGGGTCCGTGAAGAATCCAAACCCCCCCCCACCCAAAGGGTACAAAAA
GAACCTTTTTGAAGGGAAAACAAAGGCCAGCCCCCCCCAAACCCCCCTTT
GGAAAAAAAGGGTGGCAAATTATTGGACCCAAAATTCAAAAAATTTTGTT
TTCTACTTTTGCTGCCCCCTTTCAAGGCCCTTCCCCGCAAACAATCTTTC
CCACCAATTTTTCAAAAAAATATAAACAAACAAGGGGGGAACCTCTCCCC
TC
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