DY260441

Overview
NameDY260441
Unique NameDY260441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1052
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_METBF (Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=psmA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.455e-27
Identity = 77/223 (34.53%), Postives = 114/223 (51.12%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFEA-FRNDLPNKGFIELPKNHLRR 754
            GYD ++T FSPDGR+FQ+EYA +AV                               T +GIK  DG+V+ V+K I S+++   S  +I  +  H G A +GL AD R +V RA+ EA      Y EPI V+ +++++  +    T Y  +RP+G  +++ G D + P+L+  +PSG    Y  TAIG GR A    +  FEA +R D+     I L  + L R
Sbjct:    8 GYDRAITVFSPDGRLFQVEYAREAVKRG---------------------------TTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNLPRLFETDPSGALLEYKATAIGAGRNAV---VEVFEAEYRQDMNMDAAILLGMDALYR 200          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 5.470e-27
Identity = 68/194 (35.05%), Postives = 100/194 (51.55%), Query Frame = 2
Query:   86 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAA 667
            +GYD ++T FSP+GR++Q+EYA +AV                               T +GIKC DG+V+ V++ I SK++   S  +I  +  H   A +GL AD R ++ RA+ EA      YGE I V+ LA+++       T +   RPFG  +++ G DR   +L+  +PSG    Y  TAIG GRP A
Sbjct:    8 SGYDRAITIFSPEGRLYQVEYAREAVRRG---------------------------TTAVGIKCNDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIA 174          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.591e-26
Identity = 71/193 (36.79%), Postives = 99/193 (51.30%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAA 667
            GYD ++T FSPDGR+FQ+EYA +AV                               T IGIKC +GIV+ V+K   S ++   S  +I  +  H G A +GL AD R +V RA+ EA   +  Y EPI V  L++++   + + T    +RPFG  +I+GG      +L+  +PSG    Y  TAIG GR AA
Sbjct:    8 GYDRAITVFSPDGRLFQVEYAREAVKRG---------------------------TTSIGIKCSEGIVLAVDKRTTSNLVEATSIEKIFKIDEHIGAATSGLVADARALVERARVEAQINKITYSEPIRVDSLSKKLCDMLQMYTQNGGVRPFGSALIIGGVYDGICKLFETDPSGALIEYKATAIGSGRSAA 173          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.591e-26
Identity = 75/217 (34.56%), Postives = 105/217 (48.39%), Query Frame = 2
Query:   86 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW---------WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFEAFRNDL 709
            T YD  V TFSP+GR+FQ+EYA +A+                               T IG+K K+G+V+ VEK I S ++ P S  +I  +  H G A++GL AD R +V  A+ E  N+   YGEP+ V+   Q       LC L             RPFG  +++ G+D +GP LY  +PSG  ++  G AIG G   A + +   E F  DL
Sbjct:    6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGS---------------------------TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQA------LCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQ--EQFNKDL 187          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_METMJ (Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.078e-26
Identity = 71/216 (32.87%), Postives = 109/216 (50.46%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFE-AFRNDLPNKGFIEL 733
            GYD ++T FSPDGR++Q+EYA +AV                               T +GIKC +G+V+ V+K + S+++ P S  +I  +  H G+A +GL  D R +V RA+ E+      Y EPI V+ LA+++  ++   T +   RP+G  +++ G      +L+  +PSG    Y  T IG GRPA    I  FE  ++ D    G I L
Sbjct:    8 GYDRAITVFSPDGRLYQVEYAREAVKRG---------------------------TTAVGIKCSEGVVLIVDKRVTSRLLEPVSIEKIFKIDAHIGVASSGLVGDARSLVDRARVESQINRVSYNEPINVEILAKKLCDHMQTYTQFGGARPYGTALLIAGVSDGEARLFETDPSGTLLEYKATGIGTGRPAV---IKTFEDEYQEDADFSGAIRL 193          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.715e-26
Identity = 72/208 (34.62%), Postives = 108/208 (51.92%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFEA-FRNDL 709
            GYD ++T FSPDGR+FQ+EYA +AV                               T +GIK  DG+V+ V+K I S+++   S  +I  +  H G A +GL AD R +V RA+ EA      Y E I V+ +++++  +    T Y  +RP+G  +++ G D + P+L+  +PSG    Y  TAIG GR A    +  FEA +R D+
Sbjct:    8 GYDRAITVFSPDGRLFQVEYAREAVKRG---------------------------TTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNKPRLFETDPSGALLEYKATAIGAGRNAV---VEVFEADYREDM 185          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.032e-25
Identity = 71/210 (33.81%), Postives = 99/210 (47.14%), Query Frame = 2
Query:   92 YDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW------------WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGK 685
            YD  V TFSP+GR+FQ+EYA +A+                               T IG+K KD +V+GVEK + S +M   S  ++  +  H G A++GL AD R I+  A+ +  N+   Y EP  ++   Q +      C L                RPFG  +++ G D  GPQLY  EPSG  +RY   AIG G   AK+E+ K
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS---------------------------TAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSI------CDLALRFGEGEDGEERIMSRPFGVALLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVK 184          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.032e-25
Identity = 74/217 (34.10%), Postives = 104/217 (47.93%), Query Frame = 2
Query:   86 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW---------WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFEAFRNDL 709
            T YD  V TFSP+GR+FQ+EYA +A+                               T IG+K K+G+V+ VEK I S ++ P S  +I  +  H G A++GL AD R +V  A+ E  N+   YGEP+ V+   Q       LC L             RPFG  +++ G+D +GP LY  +PSG  ++    AIG G   A + +   E F  DL
Sbjct:    6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGS---------------------------TAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQA------LCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ--EQFNKDL 187          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.347e-25
Identity = 71/208 (34.13%), Postives = 107/208 (51.44%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFEA-FRNDL 709
            GYD ++T FSPDGR+FQ+EYA +AV                               T +GIK  DG+V+ V+K I S+++   S  +I  +  H G A +GL AD R +V RA+ EA      Y E I V+ +++++  +    T Y  +RP+G  +++ G D   P+L+  +PSG    Y  TAIG GR A    +  FEA ++ D+
Sbjct:    6 GYDRAITVFSPDGRLFQVEYAREAVKRG---------------------------TTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARALVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDKRPRLFETDPSGALLEYKATAIGAGRNAV---VEVFEADYKEDM 183          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.347e-25
Identity = 65/193 (33.68%), Postives = 99/193 (51.30%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAA 667
            GYD ++T FSPDGR++Q+EYA +AV                               T +GIK  DG+V+ V+K ++SK++   S  +I  +  H G+A +GL  D R +V RA+ E       Y E I V+ LA+++  ++   T Y  +RP+G  +++ G      +L+  +PSG    Y  T IG GRPAA
Sbjct:    8 GYDRAITVFSPDGRLYQVEYAREAVKRG---------------------------TTAVGIKAHDGVVLIVDKRVSSKLLESSSIEKIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAKKLCDHMQTLTQYGGIRPYGTALLIAGVSDGESRLFETDPSGTLLEYKATGIGIGRPAA 173          
The following BLAST results are available for this feature:
BLAST of DY260441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSMA_METBF2.455e-2734.53Proteasome subunit alpha OS=Methanosarcina barkeri... [more]
PSMA_METM65.470e-2735.05Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METS31.591e-2636.79Proteasome subunit alpha OS=Methanobrevibacter smi... [more]
PSA5_SOYBN1.591e-2634.56Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]
PSMA_METMJ2.078e-2632.87Proteasome subunit alpha OS=Methanoculleus marisni... [more]
PSMA_METMA2.715e-2634.62Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSA5_SCHPO1.032e-2533.81Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSA5A_ARATH1.032e-2534.10Proteasome subunit alpha type-5-A OS=Arabidopsis t... [more]
PSMA_METTE1.347e-2534.13Proteasome subunit alpha OS=Methanosarcina thermop... [more]
PSMA_METB61.347e-2533.68Proteasome subunit alpha OS=Methanoregula boonei (... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YH24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260441 ID=DY260441; Name=DY260441; organism=Citrus clementina; type=EST; length=1052bp
CGCTTTCTCAGTAGAAGGGAAAGGGAAATCAAATTGACTCAAAAATCGAA
AAAGAAAGAAGAGAGCAAGCATGAGCAGCATAGGCACAGGCTACGATCTG
TCGGTGACCACATTCTCTCCCGACGGTCGCGTTTTCCAGATCGAATACGC
CGCCAAAGCCGTCGACAACAGCGGGTAGGTTAACTCACTCTCTCTTTCGC
TCTTTTTTTTATTCTCCATTCTTAATATCCTTATTTTTTCAATCTTCGCT
CGCAGGACTGTGATTGGAATTAAATGCAAAGATGGCATCGTTATGGGAGT
GGAGAAGCTAATAGCGTCGAAGATGATGTTGCCTGGTTCCAATAGAAGAA
TCCATTCCGTTCATCGTCACTCCGGCATGGCTGTTGCAGGATTAGCAGCA
GATGGGAGACAAATTGTTACCAGGGCCAAGTCTGAAGCTACAAACTATGA
AAGTGTATATGGCGAACCAATTCCTGTTAAAGAACTTGCTCAACGAGTTG
CTAGCTATGTGCATCTATGTACTCTATATTGGTGGCTCAGACCTTTTGGA
TGTGGTGTAATTCTTGGAGGTTATGACAGAGATGGACCGCAATTGTATAT
GATTGAACCTTCTGGTATCTCCTATAGGTATTTTGGAACTGCAATTGGAA
AGGGCAGGCCAGCCGCTAAAACCGAGATTGGAAAATTTGAAGCTTTTCGA
AATGACCTGCCCAACAAGGGGTTCATTGAATTACCCAAGAACCATTTAAG
GAGGTGCCCGAATGAGGCCTAAGGCAAGGGCCTTTGAACTTGGAAATGGA
CCGGGGTCCGTGAAGAATCCAAACCCCCCCCCACCCAAAGGGTACAAAAA
GAACCTTTTTGAAGGGAAAACAAAGGCCAGCCCCCCCCAAACCCCCCTTT
GGAAAAAAAGGGTGGCAAATTATTGGACCCAAAATTCAAAAAATTTTGTT
TTCTACTTTTGCTGCCCCCTTTCAAGGCCCTTCCCCGCAAACAATCTTTC
CCACCAATTTTTCAAAAAAATATAAACAAACAAGGGGGGAACCTCTCCCC
TC
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