DY260444

Overview
NameDY260444
Unique NameDY260444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1339
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1531 contig Ccv1_Contig1531:1..1339. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_MOUSE (60S ribosomal protein L40 OS=Mus musculus GN=Uba52 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.418e-19
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNC KKKCGH+N LRPK K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_MACFA (60S ribosomal protein L40 OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.418e-19
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNC KKKCGH+N LRPK K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_HUMAN (60S ribosomal protein L40 OS=Homo sapiens GN=UBA52 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.418e-19
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNC KKKCGH+N LRPK K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_FELCA (60S ribosomal protein L40 OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.418e-19
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNC KKKCGH+N LRPK K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_CHICK (60S ribosomal protein L40 OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.418e-19
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNC KKKCGH+N LRPK K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_CANFA (60S ribosomal protein L40 OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.418e-19
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNC KKKCGH+N LRPK K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_BOVIN (60S ribosomal protein L40 OS=Bos taurus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.418e-19
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNC KKKCGH+N LRPK K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_ACACA (60S ribosomal protein L40 OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.944e-19
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            +IEPSL  LARKYN DK++CRKCYARLHPRAVNC KKKCGHSN  RPK K+K
Sbjct:    1 VIEPSLQVLARKYNCDKVVCRKCYARLHPRAVNCRKKKCGHSNHWRPKKKLK 52
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_DROME (60S ribosomal protein L40 OS=Drosophila melanogaster GN=RpL40 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.299e-18
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL  LA+KYN DKMICRKCYARLHPRA NC KKKCGH+N LRPK K+K
Sbjct:    1 IIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK 52
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_DICDI (60S ribosomal protein L40 OS=Dictyostelium discoideum GN=ubqB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.215e-18
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 3 
Query:  105 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKI 254
            IEPSL+ LARKY  DKMICRKCYARLHPRAVNC KKKCGHSN LRPK K+
Sbjct:    1 IEPSLVILARKYKCDKMICRKCYARLHPRAVNCRKKKCGHSNNLRPKKKL 50
The following BLAST results are available for this feature:
BLAST of DY260444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RL40_MOUSE3.418e-1982.6960S ribosomal protein L40 OS=Mus musculus GN=Uba52... [more]
RL40_MACFA3.418e-1982.6960S ribosomal protein L40 OS=Macaca fascicularis G... [more]
RL40_HUMAN3.418e-1982.6960S ribosomal protein L40 OS=Homo sapiens GN=UBA52... [more]
RL40_FELCA3.418e-1982.6960S ribosomal protein L40 OS=Felis catus GN=UBA52 ... [more]
RL40_CHICK3.418e-1982.6960S ribosomal protein L40 OS=Gallus gallus GN=UBA5... [more]
RL40_CANFA3.418e-1982.6960S ribosomal protein L40 OS=Canis familiaris GN=U... [more]
RL40_BOVIN3.418e-1982.6960S ribosomal protein L40 OS=Bos taurus GN=UBA52 P... [more]
RL40_ACACA9.944e-1978.8560S ribosomal protein L40 OS=Acanthamoeba castella... [more]
RL40_DROME1.299e-1880.7760S ribosomal protein L40 OS=Drosophila melanogast... [more]
RL40_DICDI2.215e-1884.0060S ribosomal protein L40 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YI03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260444 ID=DY260444; Name=DY260444; organism=Citrus clementina; type=EST; length=1339bp
TTATCTTCGCTGTTTAGCAACTTGAGGATGGCCGTACTCTAGCCGATTAC
AATATCCAAAAGGAGTCAACTCTGCCTCTGGTTCTGATGCTTCGTGGTGG
TATTATTGAGCCTTCTTTGATGGCATTGGCAAGGAAGTATAACCAGGACA
AGATGATCTGCCGAAAATGTTATGCACGCCTGCACCCCCGTGCTGTGAAC
TGCACGAAGAAGAAATGTGGGCACAGCAACCAGCTGAGGCCAAAGAACAA
GATCAAGTAGATATTCTGCAGACAAATGCTACATTTTATACTGAAACACG
ATGTTTTGCCTATAATATGTACCATCAACTATTGCCTAATAATAGTTGTC
ACTTAGTACGTGATTTCTGTTTCAAGATGTTTCCCAGGTTGACAGTATTT
GTAGACTGATTACTATCCCCTCTATGTGCCGTGCCTACGAGCCCTTTATT
AGAAACAAAAAGCATACACCCCCAACCTCTCCTGAACCAAGTAGACCATA
TAACAACACCATGCCTTACCTGTTTCTCACACCGACCTGCTCGCTACCTC
CTCAACCTGCAATCCCTTTTTCTCCCCCCCCACCTGACCCCCCCACCTCC
CGCACGCCACTTACCCCTTCCAGGCGCTTTCACTTTGCTGATCCTTCACC
CCTGATCCAAATCACTCGACTGCCACACTCCACCACCTACCTCCACCCAC
CCATCAACCCCAAAACCCACCCATGACCCCTCCACCTCCCAACGTTTCTT
GTCACTCCCTCTACCTGATATTTACTCTTTTCCCCCTTTCAACTCACAAC
CCCATCTTACCTCCCATCGCCAATTTCCCTTCCCTCACCTCGCCCCTACC
CCATCCTACCACCACTCACATCACAATCCACCCCACCCCCCCACAACTTT
CCACACTCCTCACCCCCCACCTGTAAATCATCTCTCACTCACTTCCACAA
CCACAGATCCCAGTCTCACACACTCCGCTACATTCCCCCCATACGCTCTA
CCCCTTTACAGCTCCCCCTTCCCCACCACCCCTCCCCGACCCAACATCCC
CTACCACGCCACCCCCACCTCTATACATCCTCACCTCTCCCAGAACTCCT
TACCCACCCCCCCCTCCCATTTTCGTCAACTCCCCTGCCCACTCTCTCCC
CACTCAATCCTCCATCACTCTCTAACTGCCCATCACTCCTCCCAACACAA
CCATTATCGCACATTCCTGCCCCACCGTCCCACCATTTATTCCGTCGCTC
CCCACTACCACACCAGCTTATACCTCCGACCTCCCACGTAGACAGCCTCA
CTCCCTATTTAATTAACACCACTCCCTATCCGGACTGAT
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