DY260444

Overview
NameDY260444
Unique NameDY260444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1339
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1531 contig Ccv1_Contig1531:1..1339. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_NEUCR (60S ribosomal protein L40 OS=Neurospora crassa GN=ubi-1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.436e-17
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 3
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL ALA K+N DKMICRKCYARL PRA NC K+KCGH+NQLRPK K+K
Sbjct:    1 IIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 52          
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_SCHPO (60S ribosomal protein L40 OS=Schizosaccharomyces pombe GN=ubi1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.449e-17
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 3
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL ALA KYN +K ICRKCYARL PRA NC KKKCGH+NQLRPK K+K
Sbjct:    1 IIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 52          
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_YEAST (60S ribosomal protein L40 OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.199e-17
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 3
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL ALA KYN DK +CRKCYARL PRA NC K+KCGH+NQLRPK K+K
Sbjct:    1 IIEPSLKALASKYNCDKSVCRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 52          
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_CRYNE (60S ribosomal protein L40 OS=Cryptococcus neoformans GN=UBI1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.879e-16
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 3
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL ALA KYN +K ICRKCYARL PRA NC K+KCGHS+Q+RPK  +K
Sbjct:    1 IIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKRKCGHSSQIRPKKALK 52          
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_EIMBO (60S ribosomal protein L40 OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.755e-15
Identity = 39/52 (75.00%), Postives = 42/52 (80.77%), Query Frame = 3
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL  LA KYN +K ICRKCYARL PRA NC KKKCGH++QLRPK K K
Sbjct:    1 IIEPSLALLASKYNCEKKICRKCYARLPPRATNCRKKKCGHTSQLRPKKKPK 52          
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_CAEEL (60S ribosomal protein L40 OS=Caenorhabditis elegans GN=ubq-2 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.755e-15
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 3
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL  LA+KYN DK ICRKCYARL PRA NC KKKCGHS++LR K K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKQICRKCYARLPPRASNCRKKKCGHSSELRIKKKLK 52          
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_TOBAC (60S ribosomal protein L40 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.780e-13
Identity = 39/72 (54.17%), Postives = 44/72 (61.11%), Query Frame = 3
Query:  102 IIEPSLMALARKYNQDKMICRKCY--------------------ARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL ALA K+N DKMICRKCY                    ARL PRA NC K+KCGH+N +RPK K+K
Sbjct:    1 IIEPSLKALASKFNCDKMICRKCYVRCPRRTPQRTCRVLTWIPQARLPPRATNCRKRKCGHTNHVRPKKKLK 72          
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_TETPY (60S ribosomal protein L40 OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.065e-12
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 3
Query:  105 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            +EP++ ALA+KYN +K +CR CYARL P+A NC K+KCGHSN LR K K K
Sbjct:    2 MEPTIAALAKKYNCEKKVCRDCYARLPPKATNCRKRKCGHSNSLRLKKKPK 52          
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_LEITA (60S ribosomal protein L40 OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.047e-12
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 3
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            ++EP+L+ALA+KYN +K +CR+CYARL  RA NC KK CGH + LR K K++
Sbjct:    1 VMEPTLVALAKKYNWEKKVCRRCYARLPVRATNCRKKACGHCSNLRMKKKLR 52          
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_LEIMA (60S ribosomal protein L40 OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.047e-12
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 3
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            ++EP+L+ALA+KYN +K +CR+CYARL  RA NC KK CGH + LR K K++
Sbjct:    1 VMEPTLVALAKKYNWEKKVCRRCYARLPVRATNCRKKACGHCSNLRMKKKLR 52          
The following BLAST results are available for this feature:
BLAST of DY260444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RL40_NEUCR1.436e-1778.8560S ribosomal protein L40 OS=Neurospora crassa GN=... [more]
RL40_SCHPO2.449e-1778.8560S ribosomal protein L40 OS=Schizosaccharomyces p... [more]
RL40_YEAST3.199e-1776.9260S ribosomal protein L40 OS=Saccharomyces cerevis... [more]
RL40_CRYNE7.879e-1673.0860S ribosomal protein L40 OS=Cryptococcus neoforma... [more]
RL40_EIMBO1.755e-1575.0060S ribosomal protein L40 OS=Eimeria bovis PE=2 SV... [more]
RL40_CAEEL1.755e-1575.0060S ribosomal protein L40 OS=Caenorhabditis elegan... [more]
RL40_TOBAC4.780e-1354.1760S ribosomal protein L40 OS=Nicotiana tabacum PE=... [more]
RL40_TETPY1.065e-1262.7560S ribosomal protein L40 OS=Tetrahymena pyriformi... [more]
RL40_LEITA4.047e-1257.6960S ribosomal protein L40 OS=Leishmania tarentolae... [more]
RL40_LEIMA4.047e-1257.6960S ribosomal protein L40 OS=Leishmania major GN=U... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YI03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260444 ID=DY260444; Name=DY260444; organism=Citrus clementina; type=EST; length=1339bp
TTATCTTCGCTGTTTAGCAACTTGAGGATGGCCGTACTCTAGCCGATTAC
AATATCCAAAAGGAGTCAACTCTGCCTCTGGTTCTGATGCTTCGTGGTGG
TATTATTGAGCCTTCTTTGATGGCATTGGCAAGGAAGTATAACCAGGACA
AGATGATCTGCCGAAAATGTTATGCACGCCTGCACCCCCGTGCTGTGAAC
TGCACGAAGAAGAAATGTGGGCACAGCAACCAGCTGAGGCCAAAGAACAA
GATCAAGTAGATATTCTGCAGACAAATGCTACATTTTATACTGAAACACG
ATGTTTTGCCTATAATATGTACCATCAACTATTGCCTAATAATAGTTGTC
ACTTAGTACGTGATTTCTGTTTCAAGATGTTTCCCAGGTTGACAGTATTT
GTAGACTGATTACTATCCCCTCTATGTGCCGTGCCTACGAGCCCTTTATT
AGAAACAAAAAGCATACACCCCCAACCTCTCCTGAACCAAGTAGACCATA
TAACAACACCATGCCTTACCTGTTTCTCACACCGACCTGCTCGCTACCTC
CTCAACCTGCAATCCCTTTTTCTCCCCCCCCACCTGACCCCCCCACCTCC
CGCACGCCACTTACCCCTTCCAGGCGCTTTCACTTTGCTGATCCTTCACC
CCTGATCCAAATCACTCGACTGCCACACTCCACCACCTACCTCCACCCAC
CCATCAACCCCAAAACCCACCCATGACCCCTCCACCTCCCAACGTTTCTT
GTCACTCCCTCTACCTGATATTTACTCTTTTCCCCCTTTCAACTCACAAC
CCCATCTTACCTCCCATCGCCAATTTCCCTTCCCTCACCTCGCCCCTACC
CCATCCTACCACCACTCACATCACAATCCACCCCACCCCCCCACAACTTT
CCACACTCCTCACCCCCCACCTGTAAATCATCTCTCACTCACTTCCACAA
CCACAGATCCCAGTCTCACACACTCCGCTACATTCCCCCCATACGCTCTA
CCCCTTTACAGCTCCCCCTTCCCCACCACCCCTCCCCGACCCAACATCCC
CTACCACGCCACCCCCACCTCTATACATCCTCACCTCTCCCAGAACTCCT
TACCCACCCCCCCCTCCCATTTTCGTCAACTCCCCTGCCCACTCTCTCCC
CACTCAATCCTCCATCACTCTCTAACTGCCCATCACTCCTCCCAACACAA
CCATTATCGCACATTCCTGCCCCACCGTCCCACCATTTATTCCGTCGCTC
CCCACTACCACACCAGCTTATACCTCCGACCTCCCACGTAGACAGCCTCA
CTCCCTATTTAATTAACACCACTCCCTATCCGGACTGAT
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