DY260444

Overview
NameDY260444
Unique NameDY260444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1339
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_TRYBB (60S ribosomal protein L40 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.177e-11
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            ++EP+L ALA+KYN +K +CR+CYARL  RA NC KK CGH + LR K K++
Sbjct:    1 VMEPTLEALAKKYNWEKKVCRRCYARLPVRATNCRKKGCGHCSNLRMKKKLR 52
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_TRYCR (60S ribosomal protein L40 OS=Trypanosoma cruzi GN=FUS1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.538e-11
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            ++EP+L ALA+KYN +K +CR+CYARL  RA NC KK CGH + LR K K++
Sbjct:    1 VMEPTLEALAKKYNWEKKVCRRCYARLPVRASNCRKKACGHCSNLRMKKKLR 52
The following BLAST results are available for this feature:
BLAST of DY260444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RL40_TRYBB1.177e-1157.6960S ribosomal protein L40 OS=Trypanosoma brucei br... [more]
RL40_TRYCR1.538e-1157.6960S ribosomal protein L40 OS=Trypanosoma cruzi GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YI03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260444 ID=DY260444; Name=DY260444; organism=Citrus clementina; type=EST; length=1339bp
TTATCTTCGCTGTTTAGCAACTTGAGGATGGCCGTACTCTAGCCGATTAC
AATATCCAAAAGGAGTCAACTCTGCCTCTGGTTCTGATGCTTCGTGGTGG
TATTATTGAGCCTTCTTTGATGGCATTGGCAAGGAAGTATAACCAGGACA
AGATGATCTGCCGAAAATGTTATGCACGCCTGCACCCCCGTGCTGTGAAC
TGCACGAAGAAGAAATGTGGGCACAGCAACCAGCTGAGGCCAAAGAACAA
GATCAAGTAGATATTCTGCAGACAAATGCTACATTTTATACTGAAACACG
ATGTTTTGCCTATAATATGTACCATCAACTATTGCCTAATAATAGTTGTC
ACTTAGTACGTGATTTCTGTTTCAAGATGTTTCCCAGGTTGACAGTATTT
GTAGACTGATTACTATCCCCTCTATGTGCCGTGCCTACGAGCCCTTTATT
AGAAACAAAAAGCATACACCCCCAACCTCTCCTGAACCAAGTAGACCATA
TAACAACACCATGCCTTACCTGTTTCTCACACCGACCTGCTCGCTACCTC
CTCAACCTGCAATCCCTTTTTCTCCCCCCCCACCTGACCCCCCCACCTCC
CGCACGCCACTTACCCCTTCCAGGCGCTTTCACTTTGCTGATCCTTCACC
CCTGATCCAAATCACTCGACTGCCACACTCCACCACCTACCTCCACCCAC
CCATCAACCCCAAAACCCACCCATGACCCCTCCACCTCCCAACGTTTCTT
GTCACTCCCTCTACCTGATATTTACTCTTTTCCCCCTTTCAACTCACAAC
CCCATCTTACCTCCCATCGCCAATTTCCCTTCCCTCACCTCGCCCCTACC
CCATCCTACCACCACTCACATCACAATCCACCCCACCCCCCCACAACTTT
CCACACTCCTCACCCCCCACCTGTAAATCATCTCTCACTCACTTCCACAA
CCACAGATCCCAGTCTCACACACTCCGCTACATTCCCCCCATACGCTCTA
CCCCTTTACAGCTCCCCCTTCCCCACCACCCCTCCCCGACCCAACATCCC
CTACCACGCCACCCCCACCTCTATACATCCTCACCTCTCCCAGAACTCCT
TACCCACCCCCCCCTCCCATTTTCGTCAACTCCCCTGCCCACTCTCTCCC
CACTCAATCCTCCATCACTCTCTAACTGCCCATCACTCCTCCCAACACAA
CCATTATCGCACATTCCTGCCCCACCGTCCCACCATTTATTCCGTCGCTC
CCCACTACCACACCAGCTTATACCTCCGACCTCCCACGTAGACAGCCTCA
CTCCCTATTTAATTAACACCACTCCCTATCCGGACTGAT
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