DY260451

Overview
NameDY260451
Unique NameDY260451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1302
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260451_ssr13 microsatellite DY260451_ssr13:13..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1536 contig Ccv1_Contig1536:1..1302. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260451 vs. ExPASy Swiss-Prot
Match: TCTP_PSEMZ (Translationally-controlled tumor protein homolog OS=Pseudotsuga menziesii GN=TCTP PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 2.578e-56
Identity = 112/156 (71.79%), Postives = 123/156 (78.85%), Query Frame = 3
Query:   90 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVHTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSNLSDLQFFVGESMHDDGRLVFAYYKARATHPNF 557
            M+VYQDLL+GDELLSDSFPYKE+ NG+LWEVEGKWVVQGAVDVDIGANPS               KVVDIV TFRLQEQP FDKK F+ ++KR+IK L  KLSEERQ  FKKN+EGA K L+S LSDLQFFVGESMHDDG +VFAYYK  AT P F
Sbjct:    1 MIVYQDLLSGDELLSDSFPYKELYNGVLWEVEGKWVVQGAVDVDIGANPSAEGGDEEGVKIRLV-KVVDIVDTFRLQEQPPFDKKQFLGFIKRYIKNLATKLSEERQAEFKKNVEGAAKMLVSKLSDLQFFVGESMHDDGSMVFAYYKDGATDPTF 155          
BLAST of DY260451 vs. ExPASy Swiss-Prot
Match: TCTP_MEDSA (Translationally-controlled tumor protein homolog OS=Medicago sativa GN=TCTP PE=2 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 2.578e-56
Identity = 112/163 (68.71%), Postives = 125/163 (76.69%), Query Frame = 3
Query:   90 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVHTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSNLSDLQFFVGESMHDDGRLVFAYYKARATHPNFSAYGCCL 578
            MLVYQDLLTGDELLSDS+PYKEIENG+LWEVEGKWV +G V+VDIGAN S               KVVDIV  FRLQEQPAFDKK F+ ++KR+IKLLTPKL  E+QE+FKK+IEGATK+LL  L DLQFFVGESMHDDG LVFAYYK  A  P F  +   L
Sbjct:    1 MLVYQDLLTGDELLSDSYPYKEIENGMLWEVEGKWVTKGVVEVDIGANASAEGGEDEGVDDTAV-KVVDIVDVFRLQEQPAFDKKQFLGFVKRYIKLLTPKLDAEKQELFKKHIEGATKYLLCKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFAYAL 162          
BLAST of DY260451 vs. ExPASy Swiss-Prot
Match: TCTP_BRAOL (Translationally-controlled tumor protein homolog OS=Brassica oleracea GN=TCTP PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 2.578e-56
Identity = 108/156 (69.23%), Postives = 120/156 (76.92%), Query Frame = 3
Query:   90 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVHTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSNLSDLQFFVGESMHDDGRLVFAYYKARATHPNF 557
            MLVY DLLTGDELLSDSFPYKEIENGILWEVEGKW  +G V+V+IGANPS               KVVDIV TFRLQEQP +DKK F+ Y+K++IKLLTPKL+ E+QE FKK IEGATKFLL  L D QFFVGE MHDD  +VFAYYK  AT+P F
Sbjct:    1 MLVYTDLLTGDELLSDSFPYKEIENGILWEVEGKWTTKGCVEVNIGANPSAEEGGEDEGVDDSVEKVVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLTPEQQEEFKKGIEGATKFLLPKLKDFQFFVGEGMHDDSTIVFAYYKEGATNPTF 156          
BLAST of DY260451 vs. ExPASy Swiss-Prot
Match: TCTP_HORVU (Translationally-controlled tumor protein homolog OS=Hordeum vulgare GN=TCTP PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 9.797e-56
Identity = 107/156 (68.59%), Postives = 120/156 (76.92%), Query Frame = 3
Query:   90 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVHTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSNLSDLQFFVGESMHDDGRLVFAYYKARATHPNF 557
            MLVYQD L+GDELLSDSFPY+E+ENG+LWEV+G WVVQGAVDVDIGANPS               KVVDIV TFRLQEQPAFDKK F+ Y+KR+IK LT KL  E  + FKKN+E ATK+LLS L DLQFFVGESMHDDG +VFAYY+  A  P F
Sbjct:    1 MLVYQDKLSGDELLSDSFPYRELENGVLWEVDGHWVVQGAVDVDIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKNVESATKYLLSKLKDLQFFVGESMHDDGSVVFAYYREGAADPTF 156          
BLAST of DY260451 vs. ExPASy Swiss-Prot
Match: TCTP_WHEAT (Translationally-controlled tumor protein homolog OS=Triticum aestivum GN=TCTP PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 2.182e-55
Identity = 106/156 (67.95%), Postives = 122/156 (78.21%), Query Frame = 3
Query:   90 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVHTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSNLSDLQFFVGESMHDDGRLVFAYYKARATHPNF 557
            MLVYQD L+GDELLSDSFPY+E+ENG+LWEV+G WVVQGAVDVDIGANPS               KVVDIV TFRLQEQPAFDKK F+++MKR+IK L+ KL  +  ++FKKN+E ATK+LLS L DLQFFVGESMHDDG +VFAYYK  A  P F
Sbjct:    1 MLVYQDKLSGDELLSDSFPYRELENGVLWEVDGHWVVQGAVDVDIGANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFISHMKRYIKNLSAKLEGDDLDVFKKNVESATKYLLSKLKDLQFFVGESMHDDGGVVFAYYKEGAADPTF 156          
BLAST of DY260451 vs. ExPASy Swiss-Prot
Match: TCTP_TOBAC (Translationally-controlled tumor protein homolog OS=Nicotiana tabacum GN=TCTP PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 4.862e-55
Identity = 108/156 (69.23%), Postives = 122/156 (78.21%), Query Frame = 3
Query:   90 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVHTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSNLSDLQFFVGESMHDDGRLVFAYYKARATHPNF 557
            MLVYQDLL+GDEL SDSF Y E+ NG+LWEV+GKWVVQGAVDV+IGANPS               KVVDIV TFRLQEQP+FDKK FV YMK++IK LTPKL  E++E+FK NI+GATK+LLS LSDLQFFVGESM DD  +VFAYYK  AT P F
Sbjct:    1 MLVYQDLLSGDELPSDSFSYTELGNGVLWEVQGKWVVQGAVDVNIGANPSAEGADEDEGVDDQAIKVVDIVDTFRLQEQPSFDKKQFVAYMKKYIKNLTPKLGAEQEEVFKNNIQGATKYLLSKLSDLQFFVGESMADDTGMVFAYYKDGATDPTF 156          
BLAST of DY260451 vs. ExPASy Swiss-Prot
Match: TCTP_CUCME (Translationally-controlled tumor protein homolog OS=Cucumis melo GN=TCTP PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 7.762e-53
Identity = 104/156 (66.67%), Postives = 119/156 (76.28%), Query Frame = 3
Query:   90 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVHTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSNLSDLQFFVGESMHDDGRLVFAYYKARATHPNF 557
            MLVYQDL++GDELLSDSFPYKEIENG++WEVEGKWVV+GAVDVDIGANPS               KVVDIV TFRLQEQP+ DKK F++ +K++IK LTP L  E+QE FK  IEGA K+LL  + DLQFFVGESM DD  +VFAYYK  AT P F
Sbjct:    1 MLVYQDLVSGDELLSDSFPYKEIENGMIWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPSMDKKVFLSCIKKYIKKLTPLLQGEQQEAFKNKIEGAVKYLLPKVKDLQFFVGESMADDSAMVFAYYKEGATDPTF 156          
BLAST of DY260451 vs. ExPASy Swiss-Prot
Match: TCTP_MAIZE (Translationally-controlled tumor protein homolog OS=Zea mays GN=TCTP PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.464e-51
Identity = 105/156 (67.31%), Postives = 117/156 (75.00%), Query Frame = 3
Query:   90 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVHTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSNLSDLQFFVGESMHDDGRLVFAYYKARATHPNF 557
            MLVYQDLL+GDELLSDSF YKE+ENG+LWEVEGKWV QG VDVDIGANPS               KVVDIV TFRLQEQP FDKK FV+Y+K++IK LT  L  E+ + FKK +EGATKFLLS L DLQFFVGESM DD  + FAYYK  AT+  F
Sbjct:    1 MLVYQDLLSGDELLSDSFTYKELENGVLWEVEGKWVTQGPVDVDIGANPSAEGGEDESVDDTAV-KVVDIVDTFRLQEQPPFDKKSFVSYIKKYIKNLTAVLEPEKADEFKKGVEGATKFLLSKLKDLQFFVGESMKDDASVAFAYYKDGATNSTF 155          
BLAST of DY260451 vs. ExPASy Swiss-Prot
Match: TCTP_CRYNE (Translationally-controlled tumor protein homolog OS=Cryptococcus neoformans GN=CNM01460 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.757e-23
Identity = 62/162 (38.27%), Postives = 96/162 (59.26%), Query Frame = 3
Query:   90 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVHTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSNLSDLQFFVGESMHDDGRLVFAYYKARATHPNFSAY 566
            ML+YQD+LTGDE++SD+FP KEI   I +EV+   ++    DVDIG NPS               +V ++VH+FRLQ   +FDKK ++TY+K ++K +  KL E   +R   F+K  +   K +++N  D +F++GESM+ DG +    Y+     P F+ +
Sbjct:    1 MLIYQDVLTGDEMISDAFPIKEI-GDIAYEVDCANIIIKEGDVDIGGNPS--AEEAAEALEEGAQQVNNVVHSFRLQ-STSFDKKSYLTYLKGYMKAIKSKLQESNPDRVAAFEKGAQDFAKKIVANFKDYEFYIGESMNPDGMVCLLNYREDGVTPYFTMW 158          
BLAST of DY260451 vs. ExPASy Swiss-Prot
Match: TCTP_KLULA (Translationally-controlled tumor protein homolog OS=Kluyveromyces lactis GN=KLLA0C12716g PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.209e-21
Identity = 59/157 (37.58%), Postives = 92/157 (58.60%), Query Frame = 3
Query:   90 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVHTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQE---IFKKNIEGATKFLLSNLSDLQFFVGESMHDDGRLVFAYYKARATHP 551
            M++Y D+++GDELLSD++  K ++ G+++E +   V  G  ++DIGANPS                V ++VH+FRLQ Q AFDKK F+TY+K ++K +  +L E   +   +F+K  +   K ++ +  D +FF GESM  DG LV   Y+   T P
Sbjct:    1 MIIYTDIISGDELLSDAYDLKLVD-GVIYEADCDMVKVGGDNIDIGANPSAEDGGDDVEDGTEL--VNNVVHSFRLQ-QTAFDKKSFLTYIKGYMKEIKGRLQESNPDEVSVFEKGAQAYVKKVIGSFKDWEFFTGESMDPDGMLVLLNYREDGTTP 153          
The following BLAST results are available for this feature:
BLAST of DY260451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
TCTP_PSEMZ2.578e-5671.79Translationally-controlled tumor protein homolog O... [more]
TCTP_MEDSA2.578e-5668.71Translationally-controlled tumor protein homolog O... [more]
TCTP_BRAOL2.578e-5669.23Translationally-controlled tumor protein homolog O... [more]
TCTP_HORVU9.797e-5668.59Translationally-controlled tumor protein homolog O... [more]
TCTP_WHEAT2.182e-5567.95Translationally-controlled tumor protein homolog O... [more]
TCTP_TOBAC4.862e-5569.23Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCME7.762e-5366.67Translationally-controlled tumor protein homolog O... [more]
TCTP_MAIZE1.464e-5167.31Translationally-controlled tumor protein homolog O... [more]
TCTP_CRYNE3.757e-2338.27Translationally-controlled tumor protein homolog O... [more]
TCTP_KLULA1.209e-2137.58Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YI10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260451 ID=DY260451; Name=DY260451; organism=Citrus clementina; type=EST; length=1302bp
CTCACCGCTGCGTCTCTCTCTCTCTCTCTCTCTCCAGTTTTCTCCGTTGA
TTATTTTTCTTTTTTGTGTTCGCGAGAGAGACTGCAATCATGTTGGTCTA
TCAAGATCTCCTCACCGGTGATGAGCTTCTCTCCGATTCTTTTCCCTACA
AGGAAATTGAGAATGGGATTCTGTGGGAAGTTGAGGGAAAGTGGGTTGTA
CAAGGAGCCGTTGATGTTGACATTGGTGCAAATCCTTCTGCCGAAGGAGC
TGATGAGGATGAGGGTGTTGATGACCAAGCCGTGAAGGTGGTTGACATTG
TCCACACATTCAGGCTACAGGAGCAACCCGCTTTTGACAAGAAGCCGTTT
GTAACATACATGAAGAGATTCATCAAGTTGCTGACGCCCAAGCTGAGTGA
GGAGAGGCAGGAGATATTTAAGAAGAATATTGAGGGAGCGACCAAGTTCT
TGCTCTCGAACCTCAGTGACCTTCAATTCTTTGTTGGGGAGAGCATGCAT
GATGATGGCCGGCTTGTCTTTGCTTACTACAAGGCACGTGCGACCCACCC
CAACTTTTCTGCATACGGCTGCTGCCTTGCAGGAAGCCCACCTGCTACCC
CGGCCTTCCACAAAAACGCACCCGCACCACTTACCCATCTCAACAACCCC
CCCCCCCAATCCTTACACCACCCTAAGACCACAGCCCCCCCACAACCCGC
AATCCAAGCCTACTAATTATTATCCTTCACAACACCTAAAACGCCATTTA
ACGCGCCAAATCACTCCACTCTCTATTCCCGACATAACAAAACAATAACA
CCACACCGAATACATCTACATACTCCACCACCCACACCCATCTTCACAAT
TCACACCCTTCCCCCCTCTCATCAACCCTCACCTCCCACAACCTCACCCC
CACCCCACCGCCCTCTACCCCCTCACGACCAATCCCCCACCCTCTTCTCC
CGAGGCCTCCCATTGTTATGCTAGTCGTTGGACCGTGCTCCCCCTAGCCC
ATCCGCCAGGTTTCGACCTCGCGTTCCTCTTCCCCAGCCCTCATCTCCAC
TACACATACCCCATACCCCTCCCTATTTTTACCTTCTACCTCCTCGCCAC
CCAACCCCAGAACTACCACTATCCTCCCCACACCTACCACTCCTCACTCC
ACCCTCCAATCCCCACATCTACACGTCTATCCCTCCCTCTACACCTCCAC
ATCCCATATCCATCACATTGTCTGTCATCCCTGCTCAGACAGTGAACCTC
ATCTCAAACAGAATCACACATGCCTGCCCTCTCAGCTTCACAGCAATCCA
AT
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