DY260454

Overview
NameDY260454
Unique NameDY260454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1236
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260454_ssr909 microsatellite DY260454_ssr909:909..920. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1538 contig Ccv1_Contig1538:1..1236. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.557e-15
Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 2 
Query:   71 RTVWCENYELLMPFLDNLLNCFDVLSIDAEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGI 415
            R VW  N +  M  +   L  F +++ D E+PG +  T  ++ + E Y  +K NV+ T LIQ G TL + +G+I   +E NFS+F    D     SI+ L+  GLD  KI  +G+
Sbjct:   10 RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVENTKLIQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGV 124

HSP 2 Score: 31.187 bits (69), Expect = 3.557e-15
Identity = 15/46 (32.61%), Postives = 26/46 (56.52%), Query Frame = 1 
Query:  460 KHRENLKWVTFHGLYDVPYLVKIFTHHPLP-PHTQALSGVAPLFFQ 594
            + ++++++VTF G YD  Y + I  H  LP  H +  + V  +F Q
Sbjct:  140 RSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQ 185
[Close]
BLAST of DY260454 vs. ExPASy Swiss-Prot
Match: POP2_YEAST (Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae GN=POP2 PE=1 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 7.292e-11
Identity = 40/122 (32.79%), Postives = 66/122 (54.10%), Query Frame = 2 
Query:   68 IRTVWCENYELLMPFLDNLLNCFDVLSIDAEFPGFLRNT--PRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKIS----YTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIPKDGI 415
            +R VW  N       +  L++ ++ +SI  EF G L        +     Y  ++ NVD  + IQLG++LSD  G        T++FNF +FD KK++ + +S++LL+ SG++F+K    GI
Sbjct:  160 VRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFNF-EFDPKKEIMSTESLELLRKSGINFEKHENLGI 280

HSP 2 Score: 30.0314 bits (66), Expect = 7.292e-11
Identity = 10/48 (20.83%), Postives = 25/48 (52.08%), Query Frame = 1 
Query:  469 ENLKWVTFHGLYDVPYLVKIFTHHPLPPHTQALSGVAPLFFQSDFDPN 612
            +++ W+T+H  YD+ +L+ I  +  +P + +        +  + +D N
Sbjct:  298 DSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPNFYDLN 345
The following BLAST results are available for this feature:
BLAST of DY260454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CAF1A_ARATH3.557e-1535.65Probable CCR4-associated factor 1 homolog 1 OS=Ara... [more]
POP2_YEAST7.292e-1132.79Poly(A) ribonuclease POP2 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YI14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260454 ID=DY260454; Name=DY260454; organism=Citrus clementina; type=EST; length=1236bp
CTAAGCTACGCCCCCTTTTTAGATACCAATAGACTCCCCTTCTTTAGACT
TGGACATAGTGAGCACCATTCGTACTGTTTGGTGTGAAAATTACGAACTC
CTGATGCCCTTTCTTGACAATCTTTTAAATTGTTTCGACGTGCTATCCAT
CGACGCCGAGTTCCCGGGCTTCCTCCGCAACACCCCCAGAAACGCCCCGG
CCGTTGAGTCTTACAATGATCTCAAGTTCAACGTTGACTGCACCCACCTC
ATTCAACTTGGCATTACTCTCTCCGACAACGAGGGCAAGATCAGCTATAC
TTTTGAATTCAATTTCTCTGACTTTGATCTCAAGAAAGACCTTCACGCTG
GTGATTCTATTCAGCTTTTGAAGGATAGCGGCTTGGATTTTGACAAGATT
CCGAAGGATGGGATTCCCCAGGTGTGTTTTTGCTCCAAGATTCTTGGAGG
TTCTGTCCCAAACACAGAGAGAATCTCAAGTGGGTCACTTTCCATGGTTT
GTATGATGTACCTTACTTGGTTAAAATCTTTACCCACCACCCCTTGCCCC
CCCACACCCAAGCCCTTTCCGGGGTTGCTCCTCTGTTTTTCCAGAGTGAC
TTTGATCCAAACTTCGCACCCAATACCGCCAACGACTAACAGCCTCGCAC
TCGCCACTACAACACTTGCTTCTCCTTTTGAAAGTTCGACTTACACCCTA
CTCCCGCCACCCCCTCCCCCACCCCCTACCACCCCACCACCATCCATACC
ACCCATCCCCCACCCACACCCCTCAACGACCACTCACTTTCAAACCCCTC
TAACCACCCAATATTCCATTAACCACCCAACCCACCAATATCTCCCACAC
ACGCCCAACGCACCCACTCGCCTACCTACCTTCCCTCACCCCCCCCTTTT
CCTCTCCATCCCTCCCTCCCACCCTACAACCCCCCACAACACCCGCACCC
GACCATAATCTACTCCCTACTCACCCCCACCCTGATCACCACCACCCCCC
TCCACCAACCAGCCACAACCCCACCCCCCCTACCACATACTCCAAGCACT
CCCTCATCCACACCCCATCCACAATATCTACCCAGACCACCAATAACCAA
CACCACCAATCAACCAACACCACCCCCGAATCATACCTTCTCACCCCATC
TCCGAGGCCTCTTACCCCACTCCTGCCCACCCGCCTCCCACACTGTGCTA
TCCTTCCCACCTCCTGCCCCGCCTCATCTCCCGGCC
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