DY260462
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_BABBO (Tubulin beta chain OS=Babesia bovis PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.966e-31 Identity = 61/141 (43.26%), Postives = 89/141 (63.12%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558 MREI+ I GQ G Q+G WE+ EHGI G D+ + + + + F++E + GR+VPRAV +DLEP +D VR G + QLF P+ + G+ A NN+A+GHYT G E++D LD VRK ++ C LQGF + +++ Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDQSGTYHGDSDLQL--ERIDVFYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSL 139 HSP 2 Score: 31.187 bits (69), Expect = 1.966e-31 Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 2 Query: 641 FPIYPSPQVSTAVVEP*NSVPSTH 712 F ++PSP+VS VVEP N+ S H Sbjct: 167 FSVFPSPKVSDTVVEPYNATLSVH 190
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_PHYCI (Tubulin beta chain OS=Phytophthora cinnamomi PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 2.560e-31 Identity = 60/141 (42.55%), Postives = 91/141 (64.54%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558 MRE++ I GQ G Q+G WE+ EHG+ P G D+ + + + N +++E + GR+VPRA+ +DLEP +D VR G Y QLF P+ + G+ A NN+A+GHYT G E++D LD VRK +++C LQGF + +++ Sbjct: 1 MRELVHIQGGQCGNQIGAKFWEVISDEHGVDPTGSYHGDSDLQL--ERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPYGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSL 139 HSP 2 Score: 28.1054 bits (61), Expect = 2.560e-31 Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = 2 Query: 641 FPIYPSPQVSTAVVEP*NSVPSTH 712 + + PSP+VS VVEP N+ S H Sbjct: 167 YSVCPSPKVSDTVVEPYNATLSVH 190
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB3_OOMCK (Tubulin beta-3 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB3 PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 2.560e-31 Identity = 59/135 (43.70%), Postives = 86/135 (63.70%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGF 540 MREI+ I GQ G Q+G W++ EHG+ P G D+ + + + N +++E + GR+VPRAV +DLEP +D VR G + QLF P+ + G+ A NN+A+GHYT G E++D LD VR +++C LQGF Sbjct: 1 MREIVHIQAGQCGNQIGAKFWQVISDEHGVDPTGTYKGDSDLQL--ERINVYYNEATGGRYVPRAVLIDLEPGTMDAVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRNEAESCDCLQGF 133 HSP 2 Score: 30.4166 bits (67), Expect = 2.560e-31 Identity = 15/30 (50.00%), Postives = 19/30 (63.33%), Query Frame = 2 Query: 641 FPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730 F + PSP+VS VVEP N+ S H E+T Sbjct: 167 FSVCPSPKVSDTVVEPYNATLSVHQIVENT 196
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_ONCGI (Tubulin beta chain OS=Onchocerca gibsoni GN=TBB PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 2.560e-31 Identity = 61/135 (45.19%), Postives = 86/135 (63.70%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGF 540 MREI+ I GQ G Q+G+ WE+ EHGI P G D+ + + + N +++E R+VPRA+ VDLEP +D VR G++ QLF P+ + G+ A NN+A+GHYT G E+VD LD +RK ++ C LQGF Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPLGQYHGDSDLQL--ERINVYYNEVQKKRYVPRAILVDLEPGTMDSVRAGAFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDSVLDVIRKEAEACDCLQGF 133 HSP 2 Score: 30.8018 bits (68), Expect = 2.560e-31 Identity = 15/30 (50.00%), Postives = 19/30 (63.33%), Query Frame = 2 Query: 641 FPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730 F + PSP+VS VVEP N+ S H E+T Sbjct: 167 FSVVPSPKVSDTVVEPYNATLSVHQLVENT 196
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB2_XENLA (Tubulin beta-2 chain OS=Xenopus laevis GN=tubb2 PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 2.560e-31 Identity = 60/135 (44.44%), Postives = 86/135 (63.70%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGF 540 MREI+ + GQ G Q+G WE+ EHGI P G D+ + + + N +++E + + VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD VRK S++C LQGF Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNKFVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGF 133 HSP 2 Score: 30.8018 bits (68), Expect = 2.560e-31 Identity = 15/30 (50.00%), Postives = 19/30 (63.33%), Query Frame = 2 Query: 641 FPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730 F + PSP+VS VVEP N+ S H E+T Sbjct: 167 FSVMPSPKVSDTVVEPYNATLSVHQLVENT 196
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB4_MAIZE (Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 3.334e-31 Identity = 57/141 (40.43%), Postives = 87/141 (61.70%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558 MREI+ I GQ G Q+G WE+ C EH + G ++ + + N +++E GR+VPRAV +DLEP ++ +R G + +F P+ + G+ A NN+A+GHYT G E++D LD VRK ++NC LQGF V +++ Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHCVDSTGRYSGTSSQQLELERINVYYNEAGGGRYVPRAVLMDLEPGTMESIRAGPFGGIFRPDNFVYGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 141 HSP 2 Score: 34.2686 bits (77), Expect = 3.334e-31 Identity = 16/46 (34.78%), Postives = 25/46 (54.35%), Query Frame = 2 Query: 635 LGFPIYPSPQVSTAVVEP*NSVPSTHFPPEHTHVCRAIGQ*TYFEL 772 L F ++PSP+VS VVEP N+ S H E+ C + +++ Sbjct: 167 LTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDI 212
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB1_CAEEL (Tubulin beta-1 chain OS=Caenorhabditis elegans GN=mec-7 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 4.342e-31 Identity = 61/135 (45.19%), Postives = 87/135 (64.44%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGF 540 MREI+ I GQ G Q+G+ WE+ EHGI P G D+ + + + N +++E + ++VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD LD VRK +++ LQGF Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQL--ERINVYYNEAGSNKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVLDVVRKEAESTDCLQGF 133 HSP 2 Score: 30.8018 bits (68), Expect = 4.342e-31 Identity = 15/30 (50.00%), Postives = 19/30 (63.33%), Query Frame = 2 Query: 641 FPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730 F + PSP+VS VVEP N+ S H E+T Sbjct: 167 FSVVPSPKVSDTVVEPYNATLSVHQLVENT 196
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB1_TRIVI (Tubulin beta-1 chain OS=Trichoderma viride GN=tub1 PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 5.653e-31 Identity = 64/143 (44.76%), Postives = 92/143 (64.34%), Query Frame = 1 Query: 136 MREIISIHI--GQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558 MREI+S+H+ GQ G QVG++ W+ EHG+ G+ T D N +F+E S ++VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD LD VR+ ++NC LQGF + +++ Sbjct: 1 MREIVSVHLQTGQCGNQVGSAFWQTISGEHGLDSSGVY--GGTSDQQLDRLNVYFNEASNNKYVPRAVLVDLEPGTMDAVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAENCECLQGFQITHSL 141 HSP 2 Score: 29.261 bits (64), Expect = 5.653e-31 Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 2 Query: 641 FPIYPSPQVSTAVVEP*NSVPSTH 712 F + PSP+VS VVEP N+ S H Sbjct: 169 FSVVPSPKVSDTVVEPYNATLSMH 192
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB1_SOYBN (Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 5.653e-31 Identity = 62/144 (43.06%), Postives = 92/144 (63.89%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAH---DAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558 MREI+ + GQ G Q+G WE+ C EHGI G N +G H + N +++E S GR+VPRAV +DLEP +D +R+G + ++F P+ + G+ A NN+A+GHYT G E++D LD VRK ++NC LQGF + +++ Sbjct: 1 MREILHVQAGQCGNQIGGKFWEVMCDEHGIDATG-----NYVGNFHLQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRSGPFGKIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSL 139 HSP 2 Score: 26.5646 bits (57), Expect = 5.653e-31 Identity = 13/46 (28.26%), Postives = 22/46 (47.83%), Query Frame = 2 Query: 635 LGFPIYPSPQVSTAVVEP*NSVPSTHFPPEHTHVCRAIGQ*TYFEL 772 L F ++ P+ S VVEP N+ S H E+ C + +++ Sbjct: 165 LTFSVFAVPEGSDTVVEPYNATLSVHQLVENADECMVLDNEALYDI 210
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB1_CAEBR (Tubulin beta-1 chain OS=Caenorhabditis briggsae GN=mec-7 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 5.654e-31 Identity = 61/135 (45.19%), Postives = 87/135 (64.44%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGF 540 MREI+ I GQ G Q+G+ WE+ EHGI P G D+ + + + N +++E + ++VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD LD VRK +++ LQGF Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGQYVGDSDLQL--ERINVYYNEAGSNKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVLDVVRKEAESTDCLQGF 133 HSP 2 Score: 30.8018 bits (68), Expect = 5.654e-31 Identity = 15/30 (50.00%), Postives = 19/30 (63.33%), Query Frame = 2 Query: 641 FPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730 F + PSP+VS VVEP N+ S H E+T Sbjct: 167 FSVVPSPKVSDTVVEPYNATLSVHQLVENT 196 The following BLAST results are available for this feature:
BLAST of DY260462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 408
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260462 ID=DY260462; Name=DY260462; organism=Citrus clementina; type=EST; length=1189bpback to top |