DY260462

Overview
NameDY260462
Unique NameDY260462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1189
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_BABBO (Tubulin beta chain OS=Babesia bovis PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.966e-31
Identity = 61/141 (43.26%), Postives = 89/141 (63.12%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ I  GQ G Q+G   WE+   EHGI   G    D+ + +  +  + F++E + GR+VPRAV +DLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E++D  LD VRK ++ C  LQGF + +++
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDQSGTYHGDSDLQL--ERIDVFYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSL 139          

HSP 2 Score: 31.187 bits (69), Expect = 1.966e-31
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 2
Query:  641 FPIYPSPQVSTAVVEP*NSVPSTH 712
            F ++PSP+VS  VVEP N+  S H
Sbjct:  167 FSVFPSPKVSDTVVEPYNATLSVH 190          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_PHYCI (Tubulin beta chain OS=Phytophthora cinnamomi PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.560e-31
Identity = 60/141 (42.55%), Postives = 91/141 (64.54%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MRE++ I  GQ G Q+G   WE+   EHG+ P G    D+ + +  +  N +++E + GR+VPRA+ +DLEP  +D VR G Y QLF P+  + G+  A NN+A+GHYT G E++D  LD VRK +++C  LQGF + +++
Sbjct:    1 MRELVHIQGGQCGNQIGAKFWEVISDEHGVDPTGSYHGDSDLQL--ERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPYGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSL 139          

HSP 2 Score: 28.1054 bits (61), Expect = 2.560e-31
Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  641 FPIYPSPQVSTAVVEP*NSVPSTH 712
            + + PSP+VS  VVEP N+  S H
Sbjct:  167 YSVCPSPKVSDTVVEPYNATLSVH 190          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB3_OOMCK (Tubulin beta-3 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB3 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.560e-31
Identity = 59/135 (43.70%), Postives = 86/135 (63.70%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGF 540
            MREI+ I  GQ G Q+G   W++   EHG+ P G    D+ + +  +  N +++E + GR+VPRAV +DLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E++D  LD VR  +++C  LQGF
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWQVISDEHGVDPTGTYKGDSDLQL--ERINVYYNEATGGRYVPRAVLIDLEPGTMDAVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRNEAESCDCLQGF 133          

HSP 2 Score: 30.4166 bits (67), Expect = 2.560e-31
Identity = 15/30 (50.00%), Postives = 19/30 (63.33%), Query Frame = 2
Query:  641 FPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730
            F + PSP+VS  VVEP N+  S H   E+T
Sbjct:  167 FSVCPSPKVSDTVVEPYNATLSVHQIVENT 196          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_ONCGI (Tubulin beta chain OS=Onchocerca gibsoni GN=TBB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.560e-31
Identity = 61/135 (45.19%), Postives = 86/135 (63.70%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGF 540
            MREI+ I  GQ G Q+G+  WE+   EHGI P G    D+ + +  +  N +++E    R+VPRA+ VDLEP  +D VR G++ QLF P+  + G+  A NN+A+GHYT G E+VD  LD +RK ++ C  LQGF
Sbjct:    1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPLGQYHGDSDLQL--ERINVYYNEVQKKRYVPRAILVDLEPGTMDSVRAGAFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDSVLDVIRKEAEACDCLQGF 133          

HSP 2 Score: 30.8018 bits (68), Expect = 2.560e-31
Identity = 15/30 (50.00%), Postives = 19/30 (63.33%), Query Frame = 2
Query:  641 FPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730
            F + PSP+VS  VVEP N+  S H   E+T
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVHQLVENT 196          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB2_XENLA (Tubulin beta-2 chain OS=Xenopus laevis GN=tubb2 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.560e-31
Identity = 60/135 (44.44%), Postives = 86/135 (63.70%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGF 540
            MREI+ +  GQ G Q+G   WE+   EHGI P G    D+ + +  +  N +++E +  + VPRA+ VDLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E+VD  LD VRK S++C  LQGF
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNKFVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGF 133          

HSP 2 Score: 30.8018 bits (68), Expect = 2.560e-31
Identity = 15/30 (50.00%), Postives = 19/30 (63.33%), Query Frame = 2
Query:  641 FPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730
            F + PSP+VS  VVEP N+  S H   E+T
Sbjct:  167 FSVMPSPKVSDTVVEPYNATLSVHQLVENT 196          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB4_MAIZE (Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.334e-31
Identity = 57/141 (40.43%), Postives = 87/141 (61.70%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ I  GQ G Q+G   WE+ C EH +   G     ++  +  +  N +++E   GR+VPRAV +DLEP  ++ +R G +  +F P+  + G+  A NN+A+GHYT G E++D  LD VRK ++NC  LQGF V +++
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHCVDSTGRYSGTSSQQLELERINVYYNEAGGGRYVPRAVLMDLEPGTMESIRAGPFGGIFRPDNFVYGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 141          

HSP 2 Score: 34.2686 bits (77), Expect = 3.334e-31
Identity = 16/46 (34.78%), Postives = 25/46 (54.35%), Query Frame = 2
Query:  635 LGFPIYPSPQVSTAVVEP*NSVPSTHFPPEHTHVCRAIGQ*TYFEL 772
            L F ++PSP+VS  VVEP N+  S H   E+   C  +     +++
Sbjct:  167 LTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDI 212          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB1_CAEEL (Tubulin beta-1 chain OS=Caenorhabditis elegans GN=mec-7 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.342e-31
Identity = 61/135 (45.19%), Postives = 87/135 (64.44%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGF 540
            MREI+ I  GQ G Q+G+  WE+   EHGI P G    D+ + +  +  N +++E  + ++VPRAV VDLEP  +D VR+G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VRK +++   LQGF
Sbjct:    1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQL--ERINVYYNEAGSNKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVLDVVRKEAESTDCLQGF 133          

HSP 2 Score: 30.8018 bits (68), Expect = 4.342e-31
Identity = 15/30 (50.00%), Postives = 19/30 (63.33%), Query Frame = 2
Query:  641 FPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730
            F + PSP+VS  VVEP N+  S H   E+T
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVHQLVENT 196          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB1_TRIVI (Tubulin beta-1 chain OS=Trichoderma viride GN=tub1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.653e-31
Identity = 64/143 (44.76%), Postives = 92/143 (64.34%), Query Frame = 1
Query:  136 MREIISIHI--GQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+S+H+  GQ G QVG++ W+    EHG+   G+     T     D  N +F+E S  ++VPRAV VDLEP  +D VR+G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ ++NC  LQGF + +++
Sbjct:    1 MREIVSVHLQTGQCGNQVGSAFWQTISGEHGLDSSGVY--GGTSDQQLDRLNVYFNEASNNKYVPRAVLVDLEPGTMDAVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAENCECLQGFQITHSL 141          

HSP 2 Score: 29.261 bits (64), Expect = 5.653e-31
Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  641 FPIYPSPQVSTAVVEP*NSVPSTH 712
            F + PSP+VS  VVEP N+  S H
Sbjct:  169 FSVVPSPKVSDTVVEPYNATLSMH 192          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB1_SOYBN (Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.653e-31
Identity = 62/144 (43.06%), Postives = 92/144 (63.89%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAH---DAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ +  GQ G Q+G   WE+ C EHGI   G     N +G  H   +  N +++E S GR+VPRAV +DLEP  +D +R+G + ++F P+  + G+  A NN+A+GHYT G E++D  LD VRK ++NC  LQGF + +++
Sbjct:    1 MREILHVQAGQCGNQIGGKFWEVMCDEHGIDATG-----NYVGNFHLQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRSGPFGKIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSL 139          

HSP 2 Score: 26.5646 bits (57), Expect = 5.653e-31
Identity = 13/46 (28.26%), Postives = 22/46 (47.83%), Query Frame = 2
Query:  635 LGFPIYPSPQVSTAVVEP*NSVPSTHFPPEHTHVCRAIGQ*TYFEL 772
            L F ++  P+ S  VVEP N+  S H   E+   C  +     +++
Sbjct:  165 LTFSVFAVPEGSDTVVEPYNATLSVHQLVENADECMVLDNEALYDI 210          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB1_CAEBR (Tubulin beta-1 chain OS=Caenorhabditis briggsae GN=mec-7 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 5.654e-31
Identity = 61/135 (45.19%), Postives = 87/135 (64.44%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGF 540
            MREI+ I  GQ G Q+G+  WE+   EHGI P G    D+ + +  +  N +++E  + ++VPRAV VDLEP  +D VR+G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VRK +++   LQGF
Sbjct:    1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGQYVGDSDLQL--ERINVYYNEAGSNKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVLDVVRKEAESTDCLQGF 133          

HSP 2 Score: 30.8018 bits (68), Expect = 5.654e-31
Identity = 15/30 (50.00%), Postives = 19/30 (63.33%), Query Frame = 2
Query:  641 FPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730
            F + PSP+VS  VVEP N+  S H   E+T
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVHQLVENT 196          
The following BLAST results are available for this feature:
BLAST of DY260462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
TBB_BABBO1.966e-3143.26Tubulin beta chain OS=Babesia bovis PE=3 SV=1[more]
TBB_PHYCI2.560e-3142.55Tubulin beta chain OS=Phytophthora cinnamomi PE=3 ... [more]
TBB3_OOMCK2.560e-3143.70Tubulin beta-3 chain OS=Oomycete-like sp. (strain ... [more]
TBB_ONCGI2.560e-3145.19Tubulin beta chain OS=Onchocerca gibsoni GN=TBB PE... [more]
TBB2_XENLA2.560e-3144.44Tubulin beta-2 chain OS=Xenopus laevis GN=tubb2 PE... [more]
TBB4_MAIZE3.334e-3140.43Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=... [more]
TBB1_CAEEL4.342e-3145.19Tubulin beta-1 chain OS=Caenorhabditis elegans GN=... [more]
TBB1_TRIVI5.653e-3144.76Tubulin beta-1 chain OS=Trichoderma viride GN=tub1... [more]
TBB1_SOYBN5.653e-3143.06Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 ... [more]
TBB1_CAEBR5.654e-3145.19Tubulin beta-1 chain OS=Caenorhabditis briggsae GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260462 ID=DY260462; Name=DY260462; organism=Citrus clementina; type=EST; length=1189bp
GAGCAATACAAGATCATTTTCGCCGGTTTTTGAGATCGAACAACGTGGTT
TAGCTTTAAAGTGTAGGGGAACAGAAAGCAAAAGGGAGGAAATTAGGGTT
CTTGGGCTTGTGGGTATTTTGAAAAAGGCAAAGAAATGAGAGAAATTATA
AGTATACACATTGGGCAAGCTGGGATTCAAGTGGGGAATTCATGCTGGGA
GCTTTATTGCCTAGAACATGGCATTCATCCTGATGGCATGATGCCCAGTG
ACAATACAATAGGTGTAGCCCATGATGCCTTCAATACATTCTTCAGTGAA
ACCAGTGCTGGCAGGCATGTGCCCAGAGCTGTGTTTGTTGATCTTGAACC
AACTGTCATTGATGAAGTTAGAACGGGTAGCTACCGCCAGCTTTTCCACC
CAGAGCAGCTTATCTCTGGCAAGGAAGATGCTGCTAACAATTTTGCAAGA
GGGCATTATACTGTTGGGAAGGAAATTGTGGATCTTTGCCTTGATCGTGT
TCGAAAGTTATCTGATAACTGCACTGGGTTGCAAGGGTTTTTGGTGTTCA
ATGCTGTTGGGGGTGGTACTGGTTCCGGTCTGGGGTCGTTGTTACTGGAA
CGCCTATCTGTAGATTATGGAAAAGAAGTCAAAGCTTGGCTTCCCTATCT
ACCCCTCTCCTCAGGTATCAACCGCAGTTGTGGAGCCTTAAAACAGTGTT
CCGTCCACTCACTTCCCTCCTGAACACACACATGTTTGCCGTGCTATTGG
ACAATGAACCTATTTTGAACTTCGGCCAGAAATCCCAAAATATTGAAAGG
CCCACTTACCCAATTTTGAACCGCTTGGAAACCCCAAAATCCACCCCCCC
TTGAAACATTTCCTTGGGGGGTTTAAGGGGGCCAATAAGGGGGAAAATTA
ACAAATTCCCCAACCCCCCCCTTGCCCCCACCCCCCCGAACCCTTTTCTG
GCCCTTCCACCAAAGCCCCCCGCCTCACCCCGCGCGCGAAAAAAACAAAC
CTAAAAAACCACTTCTTTTTTCCCAAAAAAAACCCCCCCAATGCCGCCCT
TTTAACCCCCTCCAACAGGAAAAGGGGGCCCAAACAAAGCCCCCCCCCGC
GCGGCGGAGAAAAAGAATAAGGGCGCTTGCCGCGGCCCTTTTAATACGTA
ACCCCACAAGGAAAAAATAATTTTTTCTCCCTCCCCCCC
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