DY260462
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA1_MAIZE (Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV=1) HSP 1 Score: 271.937 bits (694), Expect = 2.116e-78 Identity = 132/173 (76.30%), Postives = 139/173 (80.35%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVKAWLPYLP 654 MRE ISIHIGQAGIQVGN+CWELYCLEHGI DG MP D TIG DAFNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVFNAV VDYGK+ K P Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPGDKTIGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYP 173 HSP 2 Score: 43.5134 bits (101), Expect = 2.116e-78 Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 3 Query: 693 TVFRPLTSLLNTHMF------AVLLDNEPILNFGQKSQNIERPTYPILNRL 827 +V P S+L+TH A+LLDNE I + ++S +IERPTY LNRL Sbjct: 180 SVVEPYNSVLSTHSLLEHTDVAILLDNEAIYDICRRSLDIERPTYTNLNRL 230
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA_PLAFK (Tubulin alpha chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1) HSP 1 Score: 261.922 bits (668), Expect = 4.695e-78 Identity = 121/166 (72.89%), Postives = 137/166 (82.53%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVK 633 MRE+ISIH+GQAGIQVGN+CWEL+CLEHGI PDG MPSD DAFNTFFSET AG+HVPR VFVDLEPTV+DEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKE++D+CLDR+RKL+DNCTGLQGFL+F+AV VDYGK+ K Sbjct: 1 MREVISIHVGQAGIQVGNACWELFCLEHGIQPDGQMPSDKASRANDDAFNTFFSETGAGKHVPRCVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEVIDVCLDRIRKLADNCTGLQGFLMFSAVGGGTGSGFGCLMLERLSVDYGKKSK 166 HSP 2 Score: 52.373 bits (124), Expect = 4.695e-78 Identity = 28/38 (73.68%), Postives = 29/38 (76.32%), Query Frame = 2 Query: 623 KKSKLGFPIYPSPQVSTAVVEP*NSVPSTHFPPEHTHV 736 KKSKL F +PSPQVSTAVVEP NSV STH EHT V Sbjct: 163 KKSKLNFCCWPSPQVSTAVVEPYNSVLSTHSLLEHTDV 200
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA_TETTH (Tubulin alpha chain OS=Tetrahymena thermophila PE=1 SV=1) HSP 1 Score: 272.322 bits (695), Expect = 4.695e-78 Identity = 129/173 (74.57%), Postives = 141/173 (81.50%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVKAWLPYLP 654 MRE+ISIH+GQ GIQVGN+CWEL+CLEHGI PDG MPSD TIG DAFNTFFSET AG+HVPRAVF+DLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVFN+V VDYGK+ K P Sbjct: 1 MREVISIHVGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYP 173 HSP 2 Score: 41.9726 bits (97), Expect = 4.695e-78 Identity = 23/50 (46.00%), Postives = 31/50 (62.00%), Query Frame = 3 Query: 696 VFRPLTSLLNTHMF------AVLLDNEPILNFGQKSQNIERPTYPILNRL 827 V P S+L+TH AV+LDNE I + +++ +IERPTY LNRL Sbjct: 181 VVEPYNSILSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRL 230
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA_TETPY (Tubulin alpha chain OS=Tetrahymena pyriformis PE=3 SV=1) HSP 1 Score: 272.322 bits (695), Expect = 4.695e-78 Identity = 129/173 (74.57%), Postives = 141/173 (81.50%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVKAWLPYLP 654 MRE+ISIH+GQ GIQVGN+CWEL+CLEHGI PDG MPSD TIG DAFNTFFSET AG+HVPRAVF+DLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVFN+V VDYGK+ K P Sbjct: 1 MREVISIHVGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYP 173 HSP 2 Score: 41.9726 bits (97), Expect = 4.695e-78 Identity = 23/50 (46.00%), Postives = 31/50 (62.00%), Query Frame = 3 Query: 696 VFRPLTSLLNTHMF------AVLLDNEPILNFGQKSQNIERPTYPILNRL 827 V P S+L+TH AV+LDNE I + +++ +IERPTY LNRL Sbjct: 181 VVEPYNSILSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRL 230
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA2_CHLRE (Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii GN=TUBA2 PE=1 SV=1) HSP 1 Score: 271.166 bits (692), Expect = 6.123e-78 Identity = 129/173 (74.57%), Postives = 140/173 (80.92%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVKAWLPYLP 654 MRE+ISIHIGQAGIQVGN+CWELYCLEHGI PDG MPSD TIG DAFNTFFSET AG+HVPR +F+DLEPTV+DEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDL LDR+RKL+DNCTGLQGFLVFNAV VDYGK+ K P Sbjct: 1 MREVISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCIFLDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLALDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYP 173 HSP 2 Score: 42.743 bits (99), Expect = 6.123e-78 Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 3 Query: 696 VFRPLTSLLNTHMF------AVLLDNEPILNFGQKSQNIERPTYPILNRL 827 V P S+L+TH AV+LDNE I + ++S +IERPTY LNRL Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRSLDIERPTYTNLNRL 230
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA1_VOLCA (Tubulin alpha-1/alpha-2 chain OS=Volvox carteri GN=TUBA1 PE=3 SV=1) HSP 1 Score: 271.166 bits (692), Expect = 6.123e-78 Identity = 129/173 (74.57%), Postives = 140/173 (80.92%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVKAWLPYLP 654 MRE+ISIHIGQAGIQVGN+CWELYCLEHGI PDG MPSD TIG DAFNTFFSET AG+HVPR +F+DLEPTV+DEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDL LDR+RKL+DNCTGLQGFLVFNAV VDYGK+ K P Sbjct: 1 MREVISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCIFLDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLALDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYP 173 HSP 2 Score: 42.743 bits (99), Expect = 6.123e-78 Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 3 Query: 696 VFRPLTSLLNTHMF------AVLLDNEPILNFGQKSQNIERPTYPILNRL 827 V P S+L+TH AV+LDNE I + ++S +IERPTY LNRL Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRSLDIERPTYTNLNRL 230
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA1_CHLRE (Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii GN=TUBA1 PE=1 SV=1) HSP 1 Score: 271.166 bits (692), Expect = 6.123e-78 Identity = 129/173 (74.57%), Postives = 140/173 (80.92%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVKAWLPYLP 654 MRE+ISIHIGQAGIQVGN+CWELYCLEHGI PDG MPSD TIG DAFNTFFSET AG+HVPR +F+DLEPTV+DEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDL LDR+RKL+DNCTGLQGFLVFNAV VDYGK+ K P Sbjct: 1 MREVISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCIFLDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLALDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYP 173 HSP 2 Score: 42.743 bits (99), Expect = 6.123e-78 Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 3 Query: 696 VFRPLTSLLNTHMF------AVLLDNEPILNFGQKSQNIERPTYPILNRL 827 V P S+L+TH AV+LDNE I + ++S +IERPTY LNRL Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRSLDIERPTYTNLNRL 230
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA1_GOSHI (Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 270.781 bits (691), Expect = 7.987e-78 Identity = 130/173 (75.14%), Postives = 140/173 (80.92%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVKAWLPYLP 654 MRE ISIHIGQAGIQVGN+CWELYCLEHGI PDG MPSD T+G DAF TFFSET AG+HVPRA+FVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVF+AV VDYGK+ K P Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFYTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYP 173 HSP 2 Score: 42.743 bits (99), Expect = 7.987e-78 Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 3 Query: 693 TVFRPLTSLLNTHMF------AVLLDNEPILNFGQKSQNIERPTYPILNRL 827 +V P S+L+TH +VLLDNE I + ++S +IERPTY LNRL Sbjct: 180 SVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRL 230
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA2_ELEIN (Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 PE=2 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 7.987e-78 Identity = 131/173 (75.72%), Postives = 142/173 (82.08%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVKAWLPYLP 654 MREIISIHIGQAGIQVGNSCWELYCLEHGI PDG+MPSD ++GVA DAFNTFFSET AG+HVPRA+FVDLEPTVIDEV+TG YRQLFHPEQLIS KEDAANNFARGHYTVG+EIVD CLDR+RKL+DNCTGLQGFLVFNAV VDYG++ K P Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSLGVARDAFNTFFSETGAGKHVPRALFVDLEPTVIDEVKTGPYRQLFHPEQLISYKEDAANNFARGHYTVGREIVDPCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGRKSKLGFTIYP 173 HSP 2 Score: 41.9726 bits (97), Expect = 7.987e-78 Identity = 24/50 (48.00%), Postives = 30/50 (60.00%), Query Frame = 3 Query: 696 VFRPLTSLLNTHMF------AVLLDNEPILNFGQKSQNIERPTYPILNRL 827 V P S+L+TH VLLDNE I + ++S +IERPTY LNRL Sbjct: 181 VVEPYNSVLSTHSLIEHTDVVVLLDNEAIYDICKRSLDIERPTYTNLNRL 230
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA13_NAEGR (Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUBA13 PE=2 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 1.042e-77 Identity = 127/173 (73.41%), Postives = 143/173 (82.66%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVKAWLPYLP 654 MRE+ISIHIGQAG+QVGN+CWELYCLEHGI PDG+MPS TIGV DAFNTFFSET AG+HVPRAVF+DLEPTV+DEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVF++V VDYGK+ K P Sbjct: 1 MREVISIHIGQAGVQVGNACWELYCLEHGIQPDGLMPSSKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFSSVGGGTGSGLGALLLERLSVDYGKKSKLGFTVYP 173 HSP 2 Score: 41.5874 bits (96), Expect = 1.042e-77 Identity = 23/50 (46.00%), Postives = 31/50 (62.00%), Query Frame = 3 Query: 696 VFRPLTSLLNTHMF------AVLLDNEPILNFGQKSQNIERPTYPILNRL 827 V P S+L+TH AV+LDNE I + ++S +I+RPTY LNRL Sbjct: 181 VVEPYNSVLSTHALLEHTDVAVMLDNEAIYDICRRSLDIQRPTYTNLNRL 230 The following BLAST results are available for this feature:
BLAST of DY260462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 408
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY260462 ID=DY260462; Name=DY260462; organism=Citrus clementina; type=EST; length=1189bpback to top |