DY260462

Overview
NameDY260462
Unique NameDY260462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1189
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_ASPFL (Tubulin beta chain OS=Aspergillus flavus PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.748e-29
Identity = 57/141 (40.43%), Postives = 88/141 (62.41%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ +  GQ G Q+G + W+    EHG+   G+    + + +  +  N +F+E S  ++VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  +D VR+ ++ C  LQGF + +++
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDGSGVYNGSSDLQL--ERMNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVVDVVRREAEGCDCLQGFQITHSL 139          

HSP 2 Score: 30.8018 bits (68), Expect = 1.748e-29
Identity = 14/30 (46.67%), Postives = 19/30 (63.33%), Query Frame = 2
Query:  641 FPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730
            + + PSP+VS  VVEP N+  S H   EH+
Sbjct:  167 YSVVPSPKVSDTVVEPYNATLSVHQLVEHS 196          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB2_EMENI (Tubulin beta-2 chain OS=Emericella nidulans GN=tubC PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.276e-29
Identity = 56/141 (39.72%), Postives = 89/141 (63.12%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ +  GQ G QVG++ W+    EHG+   G+   D+ + +  +  N +F+E    ++VPRAV +DLEP  +D +R+G    L+ P+  I G+  A NN+A+GHYT G E+VD  +D VR+ +++C  LQGF V +++
Sbjct:    1 MREIVHLQTGQCGNQVGSAFWQTISGEHGLDASGIYTGDSDLQL--ERMNVYFNEAGGNKYVPRAVLIDLEPGTMDALRSGPNGALYRPDNFIYGQSSAGNNWAKGHYTEGAELVDQVIDVVRREAESCDCLQGFQVTHSL 139          

HSP 2 Score: 31.9574 bits (71), Expect = 2.276e-29
Identity = 15/30 (50.00%), Postives = 19/30 (63.33%), Query Frame = 2
Query:  641 FPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730
            F + PSP+VS  VVEP N+  S H   EH+
Sbjct:  167 FSVMPSPKVSDTVVEPYNATLSVHQLVEHS 196          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_VENIN (Tubulin beta chain OS=Venturia inaequalis PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.276e-29
Identity = 60/141 (42.55%), Postives = 87/141 (61.70%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ +  GQ G Q+G + W+    EHG+  DG    + T  +  +  N +F+E S  + VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ ++ C  LQGF + +++
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGL--DGSGVYNGTSDLQLERMNVYFNEASGNKFVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSL 139          

HSP 2 Score: 29.6462 bits (65), Expect = 2.276e-29
Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  641 FPIYPSPQVSTAVVEP*NSVPSTH 712
            F + PSP+VS  VVEP N+  S H
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVH 190          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_MELLI (Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.276e-29
Identity = 57/141 (40.43%), Postives = 88/141 (62.41%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ +  GQ G Q+G   WE+   EHGI  DG     + + +  +  + +++E +  ++VPRAV +DLEP  +D VR+G +  LF P+  + G+  A NN+A+GHYT G E+VD  LD VRK ++ C  LQGF + +++
Sbjct:    1 MREIVHLQTGQCGNQIGAKFWEVVSDEHGIATDGQYKGTSDLQL--ERISVYYNEVAGNKYVPRAVLIDLEPGTMDSVRSGPFGSLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGCDCLQGFQITHSL 139          

HSP 2 Score: 29.6462 bits (65), Expect = 2.276e-29
Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  641 FPIYPSPQVSTAVVEP*NSVPSTH 712
            F + PSP+VS  VVEP N+  S H
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVH 190          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB2_TRIVE (Tubulin beta-2 chain OS=Trichoderma virens PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.276e-29
Identity = 58/141 (41.13%), Postives = 89/141 (63.12%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ I  GQ G Q+G + W+    EHG+  +G+    + + +  +  N +F+E +  ++VPRAV VDLEP  +D VR G + QLF P+  I G+  A NN+A+GHYT G E+VD  LD +R+ ++ C  LQGF + +++
Sbjct:    1 MREIVHIQTGQCGNQIGAAFWQTISGEHGLDSNGIYGGSSELQL--ERMNVYFNEANNNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFIFGQSSAGNNWAKGHYTEGAELVDNVLDVIRREAEGCDCLQGFQITHSL 139          

HSP 2 Score: 29.6462 bits (65), Expect = 2.276e-29
Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  641 FPIYPSPQVSTAVVEP*NSVPSTH 712
            F + PSP+VS  VVEP N+  S H
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVH 190          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_TRIRU (Tubulin beta chain OS=Trichophyton rubrum PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.276e-29
Identity = 56/141 (39.72%), Postives = 88/141 (62.41%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ +  GQ G Q+G + W+    EHG+   G     + + +  +  N +F+E S+ ++VPRAV VDLEP  +D VR G + QLF P+ ++ G+  A NN+A+GHYT G  +VD  +D VR+ ++ C  LQGF + +++
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTIAGEHGLDGSGHYTGSSDLQL--ERMNVYFNEASSKKYVPRAVLVDLEPAALDAVRAGPFGQLFRPDNVVFGQSGAGNNWAKGHYTEGANLVDQVIDVVRREAEGCDCLQGFQITHSL 139          

HSP 2 Score: 31.187 bits (69), Expect = 2.276e-29
Identity = 15/30 (50.00%), Postives = 18/30 (60.00%), Query Frame = 2
Query:  641 FPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730
            F + PSP VS  VVEP N+  S H   EH+
Sbjct:  167 FSVVPSPMVSDTVVEPYNATLSIHQLVEHS 196          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB8_HUMAN (Tubulin beta-8 chain OS=Homo sapiens GN=TUBB8 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 2.276e-29
Identity = 60/135 (44.44%), Postives = 86/135 (63.70%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGF 540
            MREI+   IGQ G Q+G   WE+   EH I   G    D+ + +  +  N +++E S GR+VPRAV VDLEP  +D VR+G + Q+F P+  I G+  A NN+A+GHYT G E+++  +D VRK +++C  LQGF
Sbjct:    1 MREIVLTQIGQCGNQIGAKFWEVISDEHAIDSAGTYHGDSHLQL--ERINVYYNEASGGRYVPRAVLVDLEPGTMDSVRSGPFGQVFRPDNFIFGQCGAGNNWAKGHYTEGAELMESVMDVVRKEAESCDCLQGF 133          

HSP 2 Score: 30.0314 bits (66), Expect = 2.276e-29
Identity = 14/24 (58.33%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  641 FPIYPSPQVSTAVVEP*NSVPSTH 712
            F I PSP+VS  VVEP N+  S H
Sbjct:  167 FSILPSPKVSDTVVEPYNATLSVH 190          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_EUGGR (Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.276e-29
Identity = 58/141 (41.13%), Postives = 91/141 (64.54%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ I  GQ G Q+G+  WE+   E G+ P  + P D+ + +  +  N +++E + GR+VP A+ +DLEP  +D VR G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK +++C  LQGF + +++
Sbjct:    1 MREIVHIQAGQCGNQIGSKFWEVISDEQGVDPPDI-PGDSDLQL--ERINVYYNEATGGRYVP-AILMDLEPGTMDSVRAGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGPELIDSVLDVVRKEAESCDCLQGFQIAHSL 137          

HSP 2 Score: 31.5722 bits (70), Expect = 2.276e-29
Identity = 16/44 (36.36%), Postives = 23/44 (52.27%), Query Frame = 2
Query:  641 FPIYPSPQVSTAVVEP*NSVPSTHFPPEHTHVCRAIGQ*TYFEL 772
            F + PSP+VS  VVEP N+  S H   E+      IG    +++
Sbjct:  165 FSVIPSPKVSDTVVEPYNTTLSVHQLVENADEVMCIGNEALYDI 208          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_PORPU (Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.962e-29
Identity = 61/141 (43.26%), Postives = 88/141 (62.41%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ I  GQ G Q+G   WE+   EHGI   G    + T  +  D    +++E S GR+VPRAV VDLEP V+D ++ G +  L+ P+  ++G+  A NN+A+GHYT G E+VD  LD VR+ ++ C  LQGF V +++
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISEEHGIDSSGAY--NGTSDLQLDRAEVYYNEGSGGRYVPRAVLVDLEPGVLDTIKAGPHGGLYRPDNFVAGQSGAGNNWAKGHYTEGAELVDSVLDVVRREAEGCDCLQGFQVTHSL 139          

HSP 2 Score: 27.7202 bits (60), Expect = 2.962e-29
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  641 FPIYPSPQVSTAVVEP*NSVPSTH 712
            + + PSP+VS  VVEP N   S H
Sbjct:  167 YSVMPSPKVSDTVVEPYNCTLSVH 190          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_PHANO (Tubulin beta chain OS=Phaeosphaeria nodorum GN=tubA PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.963e-29
Identity = 60/141 (42.55%), Postives = 87/141 (61.70%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ +  GQ G Q+G + W+    EHG+  DG    + T  +  +  N +F+E S  + VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ ++ C  LQGF + +++
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGL--DGSGVYNGTSDLQLERMNVYFNEASGNKFVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSL 139          

HSP 2 Score: 29.261 bits (64), Expect = 2.963e-29
Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  641 FPIYPSPQVSTAVVEP*NSVPSTH 712
            F + PSP+VS  VVEP N+  S H
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSIH 190          
The following BLAST results are available for this feature:
BLAST of DY260462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
TBB_ASPFL1.748e-2940.43Tubulin beta chain OS=Aspergillus flavus PE=3 SV=1[more]
TBB2_EMENI2.276e-2939.72Tubulin beta-2 chain OS=Emericella nidulans GN=tub... [more]
TBB_VENIN2.276e-2942.55Tubulin beta chain OS=Venturia inaequalis PE=3 SV=... [more]
TBB_MELLI2.276e-2940.43Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3... [more]
TBB2_TRIVE2.276e-2941.13Tubulin beta-2 chain OS=Trichoderma virens PE=2 SV... [more]
TBB_TRIRU2.276e-2939.72Tubulin beta chain OS=Trichophyton rubrum PE=2 SV=... [more]
TBB8_HUMAN2.276e-2944.44Tubulin beta-8 chain OS=Homo sapiens GN=TUBB8 PE=1... [more]
TBB_EUGGR2.276e-2941.13Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=... [more]
TBB_PORPU2.962e-2943.26Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 P... [more]
TBB_PHANO2.963e-2942.55Tubulin beta chain OS=Phaeosphaeria nodorum GN=tub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260462 ID=DY260462; Name=DY260462; organism=Citrus clementina; type=EST; length=1189bp
GAGCAATACAAGATCATTTTCGCCGGTTTTTGAGATCGAACAACGTGGTT
TAGCTTTAAAGTGTAGGGGAACAGAAAGCAAAAGGGAGGAAATTAGGGTT
CTTGGGCTTGTGGGTATTTTGAAAAAGGCAAAGAAATGAGAGAAATTATA
AGTATACACATTGGGCAAGCTGGGATTCAAGTGGGGAATTCATGCTGGGA
GCTTTATTGCCTAGAACATGGCATTCATCCTGATGGCATGATGCCCAGTG
ACAATACAATAGGTGTAGCCCATGATGCCTTCAATACATTCTTCAGTGAA
ACCAGTGCTGGCAGGCATGTGCCCAGAGCTGTGTTTGTTGATCTTGAACC
AACTGTCATTGATGAAGTTAGAACGGGTAGCTACCGCCAGCTTTTCCACC
CAGAGCAGCTTATCTCTGGCAAGGAAGATGCTGCTAACAATTTTGCAAGA
GGGCATTATACTGTTGGGAAGGAAATTGTGGATCTTTGCCTTGATCGTGT
TCGAAAGTTATCTGATAACTGCACTGGGTTGCAAGGGTTTTTGGTGTTCA
ATGCTGTTGGGGGTGGTACTGGTTCCGGTCTGGGGTCGTTGTTACTGGAA
CGCCTATCTGTAGATTATGGAAAAGAAGTCAAAGCTTGGCTTCCCTATCT
ACCCCTCTCCTCAGGTATCAACCGCAGTTGTGGAGCCTTAAAACAGTGTT
CCGTCCACTCACTTCCCTCCTGAACACACACATGTTTGCCGTGCTATTGG
ACAATGAACCTATTTTGAACTTCGGCCAGAAATCCCAAAATATTGAAAGG
CCCACTTACCCAATTTTGAACCGCTTGGAAACCCCAAAATCCACCCCCCC
TTGAAACATTTCCTTGGGGGGTTTAAGGGGGCCAATAAGGGGGAAAATTA
ACAAATTCCCCAACCCCCCCCTTGCCCCCACCCCCCCGAACCCTTTTCTG
GCCCTTCCACCAAAGCCCCCCGCCTCACCCCGCGCGCGAAAAAAACAAAC
CTAAAAAACCACTTCTTTTTTCCCAAAAAAAACCCCCCCAATGCCGCCCT
TTTAACCCCCTCCAACAGGAAAAGGGGGCCCAAACAAAGCCCCCCCCCGC
GCGGCGGAGAAAAAGAATAAGGGCGCTTGCCGCGGCCCTTTTAATACGTA
ACCCCACAAGGAAAAAATAATTTTTTCTCCCTCCCCCCC
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