DY260462 | Citrus Genome Database

Overview


Name	DY260462
Unique Name	DY260462
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	1189

Libraries


Library Name	Type
Fruit-TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_CERBT (Tubulin beta chain OS=Cercospora beticola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.963e-29
Identity = 60/141 (42.55%), Postives = 87/141 (61.70%), Query Frame = 1

Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ +  GQ G Q+G + W+    EHG+  DG    + T  +  +  N +F+E S  ++VPRAV VDLEP  +D VR G   QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ ++ C  LQGF + +++
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGL--DGSGVYNGTSDLQLERMNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPXGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSL 139

HSP 2 Score: 29.6462 bits (65), Expect = 2.963e-29
Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 2

Query:  641 FPIYPSPQVSTAVVEP*NSVPSTH 712
            F + PSP+VS  VVEP N+  S H
Sbjct:  167 FSVMPSPKVSDTVVEPYNATLSVH 190

[Close]

BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_ACHKL (Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.964e-29
Identity = 59/141 (41.84%), Postives = 90/141 (63.83%), Query Frame = 1

Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MRE++ I  GQ G Q+G   WE+   EHG+ P G    D+ + +  +  N +++E + G +VPRA+ +DLEP  +D VR G Y QLF P+  + G+  A NN+A+GHYT G E++D  LD VRK +++C  LQGF + +++
Sbjct:    1 MRELVHIQGGQCGNQIGAKFWEVISDEHGVDPTGSYHGDSDLQL--ERINVYYNEAT-GTYVPRAILMDLEPGTMDSVRAGPYGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSL 138

HSP 2 Score: 28.1054 bits (61), Expect = 2.964e-29
Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = 2

Query:  641 FPIYPSPQVSTAVVEP*NSVPSTH 712
            + + PSP+VS  VVEP N+  S H
Sbjct:  166 YSVCPSPKVSDTVVEPYNATLSVH 189

[Close]

BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_DICDI (Tubulin beta chain OS=Dictyostelium discoideum GN=tubB PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 3.857e-29
Identity = 58/144 (40.28%), Postives = 88/144 (61.11%), Query Frame = 1

Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPS---DNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ I  GQ G Q+G+  WE+   EHGI  DG       ++   +  +  N +++E   G++VPR+V VDLEP  +D ++   Y +LF P+  I G+  A NN+A+GHYT G E+V+  LD VR+ ++ C  LQGF V +++
Sbjct:    1 MREIVQIQAGQCGNQIGSKFWEVISEEHGIQSDGFHAGGEDEHLKRLQLERINVYYNEARDGKYVPRSVLVDLEPGTVDTIKASPYGKLFRPDNFIHGQSGAGNNWAKGHYTEGVELVESVLDVVRRETEGCDCLQGFQVTHSI 144

HSP 2 Score: 29.6462 bits (65), Expect = 3.857e-29
Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 2

Query:  641 FPIYPSPQVSTAVVEP*NSVPSTH 712
            F + PSP+VS  VVEP N+  S H
Sbjct:  172 FSVVPSPKVSLTVVEPYNATLSVH 195

[Close]

BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_GIBZE (Tubulin beta chain OS=Gibberella zeae GN=TUB2 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.858e-29
Identity = 58/141 (41.13%), Postives = 89/141 (63.12%), Query Frame = 1

Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ +  GQ G Q+G + W+    EHG+  +G+   + T  +  +  + +F+E S  ++VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ ++ C  LQGF + +++
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDSNGVY--NGTSELQLERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSL 139

HSP 2 Score: 29.6462 bits (65), Expect = 3.858e-29
Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 2

Query:  641 FPIYPSPQVSTAVVEP*NSVPSTH 712
            F + PSP+VS  VVEP N+  S H
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVH 190

[Close]

BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_EPITY (Tubulin beta chain OS=Epichloe typhina GN=TUBB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.858e-29
Identity = 58/141 (41.13%), Postives = 89/141 (63.12%), Query Frame = 1

Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ +  GQ G Q+G + W+    EHG+  +G+   + T  +  +  + +F+E S  ++VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ ++ C  LQGF + +++
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDSNGVY--NGTSELQLERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSL 139

HSP 2 Score: 29.6462 bits (65), Expect = 3.858e-29
Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 2

Query:  641 FPIYPSPQVSTAVVEP*NSVPSTH 712
            F + PSP+VS  VVEP N+  S H
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVH 190

[Close]

BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_ACRCO (Tubulin beta chain OS=Acremonium coenophialum GN=TUB2 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.858e-29
Identity = 58/141 (41.13%), Postives = 89/141 (63.12%), Query Frame = 1

Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ +  GQ G Q+G + W+    EHG+  +G+   + T  +  +  + +F+E S  ++VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ ++ C  LQGF + +++
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDSNGVY--NGTSELQLERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSL 139

HSP 2 Score: 29.6462 bits (65), Expect = 3.858e-29
Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 2

Query:  641 FPIYPSPQVSTAVVEP*NSVPSTH 712
            F + PSP+VS  VVEP N+  S H
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVH 190

[Close]

BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_METAN (Tubulin beta chain OS=Metarhizium anisopliae PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.023e-29
Identity = 58/141 (41.13%), Postives = 89/141 (63.12%), Query Frame = 1

Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ +  GQ G Q+G + W+    EHG+  +G+   + T  +  +  + +F+E S  ++VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ ++ C  LQGF + +++
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDSNGVY--NGTSELQLERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVVRREAEGCDCLQGFQITHSL 139

HSP 2 Score: 29.6462 bits (65), Expect = 5.023e-29
Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 2

Query:  641 FPIYPSPQVSTAVVEP*NSVPSTH 712
            F + PSP+VS  VVEP N+  S H
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVH 190

[Close]

BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_GIBFU (Tubulin beta chain OS=Gibberella fujikuroi GN=TUB2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.023e-29
Identity = 58/141 (41.13%), Postives = 89/141 (63.12%), Query Frame = 1

Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ +  GQ G Q+G + W+    EHG+  +G+   + T  +  +  + +F+E S  ++VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ ++ C  LQGF + +++
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDSNGVY--NGTSELQLERMSVYFNERSGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSL 139

HSP 2 Score: 29.6462 bits (65), Expect = 5.023e-29
Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 2

Query:  641 FPIYPSPQVSTAVVEP*NSVPSTH 712
            F + PSP+VS  VVEP N+  S H
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVH 190

[Close]

BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_PNECA (Tubulin beta chain OS=Pneumocystis carinii GN=TUB-B PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.024e-29
Identity = 56/141 (39.72%), Postives = 88/141 (62.41%), Query Frame = 1

Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ +  GQ G Q+G S W     EHG+   G+    + + +  +  N +F+E S G++VPR++ +DLEP  +D VR+G +  LF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ ++ C  LQGF + +++
Sbjct:    1 MREIVHLQTGQCGNQIGASFWSTISGEHGLDSTGVYQGTSDLQL--ERMNVYFNEASGGKYVPRSILIDLEPGTMDAVRSGPFGNLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRREAEACDCLQGFQITHSL 139

HSP 2 Score: 29.6462 bits (65), Expect = 5.024e-29
Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 2

Query:  641 FPIYPSPQVSTAVVEP*NSVPSTH 712
            F + PSP+VS  VVEP N+  S H
Sbjct:  167 FSVVPSPKVSDTVVEPYNATLSVH 190

[Close]

BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_BOMMO (Tubulin beta chain OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.649e-29
Identity = 55/141 (39.01%), Postives = 90/141 (63.83%), Query Frame = 1

Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MREI+ + +G+ G Q+G+  WE+   EHGI P G    D+ + +  +  N +++E    ++VPRAV VDLEP+ +D +R G Y  L+ P+ ++ G   A NN+A+GHYT G ++++  LD VRK ++ C  LQGF + +++
Sbjct:    1 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYHGDSDLQL--ERINVYYNEAFGAKYVPRAVLVDLEPSTMDSIRGGPYGSLYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVVRKEAEGCDCLQGFQLVHSL 139

HSP 2 Score: 25.0238 bits (53), Expect = 5.649e-29
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 2

Query:  641 FPIYPSPQVSTAVVEP*NSVPSTH 712
            + + PSP VS  VVEP N+  S +
Sbjct:  167 YSVVPSPTVSETVVEPYNATLSVN 190

HSP 3 Score: 22.7126 bits (47), Expect = 5.649e-29
Identity = 10/40 (25.00%), Postives = 19/40 (47.50%), Query Frame = 3

Query:  708 LTSLLNTHMFAVLLDNEPILNFGQKSQNIERPTYPILNRL 827
            +  L+   + +  +DNE +     ++  +  PTY  LN L
Sbjct:  189 VNQLIENSIQSYCIDNEALYYICHRTLKLMAPTYGALNHL 228

The following BLAST results are available for this feature:

BLAST of DY260462 vs. ExPASy Swiss-Prot

BLAST of DY260462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408


Match Name	E-value	Identity	Description
TBB_CERBT	2.963e-29	42.55	Tubulin beta chain OS=Cercospora beticola GN=TUB1 ...	[more]
TBB_ACHKL	2.964e-29	41.84	Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1	[more]
TBB_DICDI	3.857e-29	40.28	Tubulin beta chain OS=Dictyostelium discoideum GN=...	[more]
TBB_GIBZE	3.858e-29	41.13	Tubulin beta chain OS=Gibberella zeae GN=TUB2 PE=3...	[more]
TBB_EPITY	3.858e-29	41.13	Tubulin beta chain OS=Epichloe typhina GN=TUBB PE=...	[more]
TBB_ACRCO	3.858e-29	41.13	Tubulin beta chain OS=Acremonium coenophialum GN=T...	[more]
TBB_METAN	5.023e-29	41.13	Tubulin beta chain OS=Metarhizium anisopliae PE=3 ...	[more]
TBB_GIBFU	5.023e-29	41.13	Tubulin beta chain OS=Gibberella fujikuroi GN=TUB2...	[more]
TBB_PNECA	5.024e-29	39.72	Tubulin beta chain OS=Pneumocystis carinii GN=TUB-...	[more]
TBB_BOMMO	5.649e-29	39.01	Tubulin beta chain OS=Bombyx mori PE=2 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAP12YJ02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY260462 ID=DY260462; Name=DY260462; organism=Citrus clementina; type=EST; length=1189bp
GAGCAATACAAGATCATTTTCGCCGGTTTTTGAGATCGAACAACGTGGTT
TAGCTTTAAAGTGTAGGGGAACAGAAAGCAAAAGGGAGGAAATTAGGGTT
CTTGGGCTTGTGGGTATTTTGAAAAAGGCAAAGAAATGAGAGAAATTATA
AGTATACACATTGGGCAAGCTGGGATTCAAGTGGGGAATTCATGCTGGGA
GCTTTATTGCCTAGAACATGGCATTCATCCTGATGGCATGATGCCCAGTG
ACAATACAATAGGTGTAGCCCATGATGCCTTCAATACATTCTTCAGTGAA
ACCAGTGCTGGCAGGCATGTGCCCAGAGCTGTGTTTGTTGATCTTGAACC
AACTGTCATTGATGAAGTTAGAACGGGTAGCTACCGCCAGCTTTTCCACC
CAGAGCAGCTTATCTCTGGCAAGGAAGATGCTGCTAACAATTTTGCAAGA
GGGCATTATACTGTTGGGAAGGAAATTGTGGATCTTTGCCTTGATCGTGT
TCGAAAGTTATCTGATAACTGCACTGGGTTGCAAGGGTTTTTGGTGTTCA
ATGCTGTTGGGGGTGGTACTGGTTCCGGTCTGGGGTCGTTGTTACTGGAA
CGCCTATCTGTAGATTATGGAAAAGAAGTCAAAGCTTGGCTTCCCTATCT
ACCCCTCTCCTCAGGTATCAACCGCAGTTGTGGAGCCTTAAAACAGTGTT
CCGTCCACTCACTTCCCTCCTGAACACACACATGTTTGCCGTGCTATTGG
ACAATGAACCTATTTTGAACTTCGGCCAGAAATCCCAAAATATTGAAAGG
CCCACTTACCCAATTTTGAACCGCTTGGAAACCCCAAAATCCACCCCCCC
TTGAAACATTTCCTTGGGGGGTTTAAGGGGGCCAATAAGGGGGAAAATTA
ACAAATTCCCCAACCCCCCCCTTGCCCCCACCCCCCCGAACCCTTTTCTG
GCCCTTCCACCAAAGCCCCCCGCCTCACCCCGCGCGCGAAAAAAACAAAC
CTAAAAAACCACTTCTTTTTTCCCAAAAAAAACCCCCCCAATGCCGCCCT
TTTAACCCCCTCCAACAGGAAAAGGGGGCCCAAACAAAGCCCCCCCCCGC
GCGGCGGAGAAAAAGAATAAGGGCGCTTGCCGCGGCCCTTTTAATACGTA
ACCCCACAAGGAAAAAATAATTTTTTCTCCCTCCCCCCC