DY260462

Overview
NameDY260462
Unique NameDY260462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1189
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG1_EUPOC (Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.313e-19
Identity = 50/142 (35.21%), Postives = 84/142 (59.15%), Query Frame = 1
Query:  139 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            REII+  +GQ G Q+G   W+  C+EHGI+P+G++      G   D  + FF +     +VPRAV +DLEP VI+ ++  +Y  L++PE +   K    A NN+ RG YT  +++ D  L+ + + +D    L+GF++ +++
Sbjct:    3 REIITCQVGQCGNQIGMEFWKQLCMEHGINPEGILEDFAVNG--EDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSAYSSLYNPENIYIAKHGGGAGNNWGRG-YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSI 141          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG_EMENI (Tubulin gamma chain OS=Emericella nidulans GN=mipA PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.715e-19
Identity = 49/142 (34.51%), Postives = 83/142 (58.45%), Query Frame = 1
Query:  139 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            REII+I  GQ G  VG+  W+  CLEHGI  DG +    T G   D  + FF ++   R++PRA+ +DLEP V++ +++G Y+ +++PE    G++   A NN+  G Y  G+ + +   D + + +D    L+GF+  +++
Sbjct:    3 REIITIQAGQCGNNVGSQFWQQLCLEHGISQDGNLEEFATEG--GDRKDVFFYQSDDTRYIPRAILLDLEPRVLNGIQSGPYKNIYNPENFFIGQQGIGAGNNWGAG-YAAGEVVQEEVFDMIDREADGSDSLEGFMFLHSI 141          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG_EUPAE (Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.240e-19
Identity = 50/142 (35.21%), Postives = 84/142 (59.15%), Query Frame = 1
Query:  139 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            REII+  +GQ G Q+G   W+  C+EHGI+P+G++      G   D  + FF +     +VPRAV +DLEP VI+ ++  +Y  L++PE +   K    A NN+ RG YT  +++ D  L+ + + +D    L+GF++ +++
Sbjct:    3 REIITCQVGQCGNQIGMEFWKQLCMEHGINPEGILEDFAVNG--EDRKDVFFYQADDEHYVPRAVLIDLEPRVINCIQKSTYSSLYNPENIYIAKHGGGAGNNWGRG-YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSI 141          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.990e-19
Identity = 51/142 (35.92%), Postives = 83/142 (58.45%), Query Frame = 1
Query:  139 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            REII+I +GQ G Q+G   W+  CLEHGI  DG++    T G   D  + FF +      +PR++ +DLEP VI+ ++   YR L++ E +   +    A NN+A G Y  G+++VD  +D V + +D    L+GF++ +++
Sbjct:    3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQG--GDRKDVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG-YHQGEQVVDDIMDMVDREADGSDSLEGFVLCHSI 141          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.518e-19
Identity = 49/142 (34.51%), Postives = 85/142 (59.86%), Query Frame = 1
Query:  139 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            REII++  GQ G QVG+  W+  CLEHGI PDG +    T G+  D  + FF ++   R++PRA+ +DLEP V++ + + +Y  L++PE +    +   A NN+A G Y   ++I +  +D + + ++    L+GF + +++
Sbjct:    3 REIITLQAGQCGNQVGSQFWQQLCLEHGICPDGTLEDFATEGL--DRKDVFFYQSDDTRYIPRAILLDLEPRVVNNILSDTYGSLYNPENIFVATDGGGAGNNWAHG-YAHAEKIFEDIVDMIDREAEGSDSLEGFSLLHSI 141          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 8.512e-19
Identity = 50/142 (35.21%), Postives = 82/142 (57.75%), Query Frame = 1
Query:  139 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            REII++ +GQ G Q+G   W+  CLEHGI  DG++    T G   D  + FF +     ++PRA+ +DLEP VI+ ++ G YR L++ E +        A NN+A G Y  GK + +  +D + + +D    L+GF++ +++
Sbjct:    3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQG--GDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSI 141          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 8.512e-19
Identity = 50/142 (35.21%), Postives = 82/142 (57.75%), Query Frame = 1
Query:  139 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            REII++ +GQ G Q+G   W+  CLEHGI  DG++    T G   D  + FF +     ++PRA+ +DLEP VI+ ++ G YR L++ E +        A NN+A G Y  GK + +  +D + + +D    L+GF++ +++
Sbjct:    3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQG--GDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSI 141          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.112e-18
Identity = 49/141 (34.75%), Postives = 83/141 (58.87%), Query Frame = 1
Query:  142 EIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            EII++ +GQ G Q+G   W+  CLEHGI PDG++    T G   D  + FF +     ++PRAV +DLEP VI+ + T  Y +L++ E +   K    A NN+A G ++ G+++ +   D + + +D    L+GF++ +++
Sbjct:    4 EIITLQLGQCGNQIGFEFWKRLCLEHGISPDGVLEDFATDG--QDRKDVFFYQADDNHYIPRAVLIDLEPRVINNIMTSPYSKLYNQENVFLSKHGGGAGNNWASG-FSQGEKVQEEVFDILDREADGSDSLEGFVLCHSI 141          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG1_MAIZE (Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.112e-18
Identity = 51/142 (35.92%), Postives = 82/142 (57.75%), Query Frame = 1
Query:  139 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            REII+I +GQ G Q+G   W+  CLEHGI  DG++    T G   D  + FF +      +PR++ +DLEP VI+ ++   YR L++ E +   +    A NN+A G Y  G++ VD  +D V + +D    L+GF++ +++
Sbjct:    3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQG--GDRKDVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG-YHQGEQFVDDIMDMVDREADGSDSLEGFVLCHSI 141          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG_USTVI (Tubulin gamma chain OS=Ustilago violacea GN=TUB4 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.452e-18
Identity = 45/142 (31.69%), Postives = 83/142 (58.45%), Query Frame = 1
Query:  139 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            REI+++  GQAG Q+G+  W   C EHGI  +G++    T     D  + FF +     ++PRAV +DLEP V+D +++G Y+ L++PE      +   A NN+A+G Y  G+ + +  ++ + + ++    L+GF++ +++
Sbjct:    3 REILTVSAGQAGNQIGSEFWSQLCAEHGISKEGVLEDWATDMT--DRKDVFFYQADDEHYIPRAVMIDLEPRVLDSIKSGPYKNLYNPENFFYDPQGGGAGNNWAKG-YAAGERVYEEVMEMIDREAEGSDSLEGFMLLHSI 141          
The following BLAST results are available for this feature:
BLAST of DY260462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
TBG1_EUPOC1.313e-1935.21Tubulin gamma-1 chain OS=Euplotes octocarinatus PE... [more]
TBG_EMENI1.715e-1934.51Tubulin gamma chain OS=Emericella nidulans GN=mipA... [more]
TBG_EUPAE2.240e-1935.21Tubulin gamma chain OS=Euplotes aediculatus PE=2 S... [more]
TBG2_MAIZE4.990e-1935.92Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV... [more]
TBG_SCHJP6.518e-1934.51Tubulin gamma chain OS=Schizosaccharomyces japonic... [more]
TBG2_ARATH8.512e-1935.21Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=T... [more]
TBG1_ARATH8.512e-1935.21Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBG2_DROME1.112e-1834.75Tubulin gamma-2 chain OS=Drosophila melanogaster G... [more]
TBG1_MAIZE1.112e-1835.92Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV... [more]
TBG_USTVI1.452e-1831.69Tubulin gamma chain OS=Ustilago violacea GN=TUB4 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260462 ID=DY260462; Name=DY260462; organism=Citrus clementina; type=EST; length=1189bp
GAGCAATACAAGATCATTTTCGCCGGTTTTTGAGATCGAACAACGTGGTT
TAGCTTTAAAGTGTAGGGGAACAGAAAGCAAAAGGGAGGAAATTAGGGTT
CTTGGGCTTGTGGGTATTTTGAAAAAGGCAAAGAAATGAGAGAAATTATA
AGTATACACATTGGGCAAGCTGGGATTCAAGTGGGGAATTCATGCTGGGA
GCTTTATTGCCTAGAACATGGCATTCATCCTGATGGCATGATGCCCAGTG
ACAATACAATAGGTGTAGCCCATGATGCCTTCAATACATTCTTCAGTGAA
ACCAGTGCTGGCAGGCATGTGCCCAGAGCTGTGTTTGTTGATCTTGAACC
AACTGTCATTGATGAAGTTAGAACGGGTAGCTACCGCCAGCTTTTCCACC
CAGAGCAGCTTATCTCTGGCAAGGAAGATGCTGCTAACAATTTTGCAAGA
GGGCATTATACTGTTGGGAAGGAAATTGTGGATCTTTGCCTTGATCGTGT
TCGAAAGTTATCTGATAACTGCACTGGGTTGCAAGGGTTTTTGGTGTTCA
ATGCTGTTGGGGGTGGTACTGGTTCCGGTCTGGGGTCGTTGTTACTGGAA
CGCCTATCTGTAGATTATGGAAAAGAAGTCAAAGCTTGGCTTCCCTATCT
ACCCCTCTCCTCAGGTATCAACCGCAGTTGTGGAGCCTTAAAACAGTGTT
CCGTCCACTCACTTCCCTCCTGAACACACACATGTTTGCCGTGCTATTGG
ACAATGAACCTATTTTGAACTTCGGCCAGAAATCCCAAAATATTGAAAGG
CCCACTTACCCAATTTTGAACCGCTTGGAAACCCCAAAATCCACCCCCCC
TTGAAACATTTCCTTGGGGGGTTTAAGGGGGCCAATAAGGGGGAAAATTA
ACAAATTCCCCAACCCCCCCCTTGCCCCCACCCCCCCGAACCCTTTTCTG
GCCCTTCCACCAAAGCCCCCCGCCTCACCCCGCGCGCGAAAAAAACAAAC
CTAAAAAACCACTTCTTTTTTCCCAAAAAAAACCCCCCCAATGCCGCCCT
TTTAACCCCCTCCAACAGGAAAAGGGGGCCCAAACAAAGCCCCCCCCCGC
GCGGCGGAGAAAAAGAATAAGGGCGCTTGCCGCGGCCCTTTTAATACGTA
ACCCCACAAGGAAAAAATAATTTTTTCTCCCTCCCCCCC
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