DY260462

Overview
NameDY260462
Unique NameDY260462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1189
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.896e-18
Identity = 50/143 (34.97%), Postives = 86/143 (60.14%), Query Frame = 1
Query:  139 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQ-LISGKEDAANNFARGHYTVGK--EIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            REII++++GQ G Q+G+  ++  C EHGI PDG + ++  I    D  + FF +    R+VPR++ +DLEP V+D +RT  +R  ++PE  +I     A N++A G+YT  K  EI ++    + +  ++C  L+GF   +++
Sbjct:    3 REIITLNVGQCGNQLGSEFFKKICSEHGILPDGSLSTNEFID---DRKDVFFYQADDQRYVPRSINIDLEPRVLDSIRTSEWRNFYNPENFIIPTNNGAGNSWANGYYTTEKMSEIEEI----IDREVEHCDSLEGFFFCHSI 138          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG_COPC7 (Tubulin gamma chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TUB4 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.164e-18
Identity = 47/142 (33.10%), Postives = 83/142 (58.45%), Query Frame = 1
Query:  139 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            REI+++ +GQ G Q+G   W+  C EHGI  +G++    T G   D  + FF +     ++PRA+ VDLEP VI+ +    Y  L++PE +   K+   A NN+A+G Y+ G+ I +  ++ + + ++    L+GF+V +++
Sbjct:    3 REIVTVQLGQCGNQMGAVYWQRLCAEHGISSEGILEEWATEG--GDRKDVFFYQADDEHYIPRAILVDLEPRVINNILASPYANLYNPENIFVSKDGGGAGNNWAQG-YSAGERIYEDIMEMIDREAEGSDSLEGFMVMHSI 141          

HSP 2 Score: 20.7866 bits (42), Expect = 2.164e-18
Identity = 9/26 (34.62%), Postives = 15/26 (57.69%), Query Frame = 2
Query:  623 KKSKLGFPIYPSPQVSTAVVEP*NSV 700
            KK    + ++P+ Q    VV+P NS+
Sbjct:  163 KKLIQTYSVFPNAQEGDVVVQPYNSL 188          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG2_EUPCR (Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.235e-18
Identity = 48/142 (33.80%), Postives = 81/142 (57.04%), Query Frame = 1
Query:  139 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGK--EDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            REII+  +GQ G Q+G   W+  C+EHGI P+G++      G   D  + FF +     +VPRAV +DLEP VI +++   Y  L++PE     K  + A NN+A+G Y  G +  +  ++ + + +D    L+GF++ +++
Sbjct:    3 REIITCQVGQCGNQIGMEFWKQLCMEHGISPEGILEEYALDG--EDRKDVFFYQADDEHYVPRAVLIDLEPGVIKQIQNSPYSNLYNPENFFVSKTMDGAGNNWAKG-YCEGAKYEEEIIEMIDREADGSDSLEGFVLTHSI 141          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG_PHYPA (Tubulin gamma chain OS=Physcomitrella patens GN=TUBG1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.225e-18
Identity = 48/142 (33.80%), Postives = 82/142 (57.75%), Query Frame = 1
Query:  139 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            REII++ +GQ G Q+G   W+  CLEHGI  DG++    T G   D  + FF +     ++PRA+ +DLEP VI+ ++   YR L++ E +        A NN+A G Y  G+++ +  +D + + +D    L+GF++ +++
Sbjct:    3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQG--GDRKDVFFYQADDEHYIPRALLIDLEPRVINSIQNSEYRNLYNHENVFVADHGGGAGNNWASG-YHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSI 141          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.225e-18
Identity = 49/142 (34.51%), Postives = 81/142 (57.04%), Query Frame = 1
Query:  139 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            REII++ +GQ G Q+G+  W+  C EHGI+  G +      G+  D  + FF ++    +VPRA+ +DLEP VID ++T  Y  L++ E +   ++   A NN+A G Y  G+   D   D + + +D    L+GFL+ +++
Sbjct:    3 REIITLQVGQCGNQIGSEFWKQLCKEHGINAAGYLEEFAKPGI--DRKDVFFYQSDDDHYVPRALLLDLEPRVIDSIKTSEYSGLYNQENIFVAEKGTGAGNNWANG-YKQGESFYDDIFDMIDREADGSESLEGFLLTHSI 141          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG2_MOUSE (Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.225e-18
Identity = 49/142 (34.51%), Postives = 83/142 (58.45%), Query Frame = 1
Query:  139 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            REII++ +GQ G Q+G   W+  C EHGI P+G++    T G   D  + FF +     ++PRAV +DLEP VI  +   SY +L++PE +   +    A NN+ RG ++ G++I +   D + + +D    L+GF++ +++
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGT--DRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWGRG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSI 141          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.518e-18
Identity = 47/142 (33.10%), Postives = 82/142 (57.75%), Query Frame = 1
Query:  139 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            REII+  +GQ G Q+G   W+  C+EHGI+P+G++      G   D  + FF +     +VPRAV +DLEP VI+ ++   Y  L++PE +   K    A NN+ RG Y   +++ +  ++ + + +D    L+GF++ +++
Sbjct:    3 REIITCQVGQCGNQIGMEFWKQLCMEHGINPEGILEEYAQNG--EDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSPYASLYNPENIFISKHGGGAGNNWGRG-YCDAEKVQEEIIEMIDREADGSDSLEGFVLTHSI 141          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG1_RAT (Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.206e-18
Identity = 49/142 (34.51%), Postives = 83/142 (58.45%), Query Frame = 1
Query:  139 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            REII++ +GQ G Q+G   W+  C EHGI P+G++    T G   D  + FF +     ++PRAV +DLEP VI  +   SY +L++PE +   +    A NN+A G ++ G++I +   D + + +D    L+GF++ +++
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGT--DRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSI 141          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG1_MOUSE (Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.206e-18
Identity = 49/142 (34.51%), Postives = 83/142 (58.45%), Query Frame = 1
Query:  139 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            REII++ +GQ G Q+G   W+  C EHGI P+G++    T G   D  + FF +     ++PRAV +DLEP VI  +   SY +L++PE +   +    A NN+A G ++ G++I +   D + + +D    L+GF++ +++
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGT--DRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSI 141          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG_ANEPH (Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.229e-17
Identity = 48/142 (33.80%), Postives = 82/142 (57.75%), Query Frame = 1
Query:  139 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            REII++ +GQ G Q+G   W+  CLEHGI  +GM+    T G   D  + FF +     ++PRA+ +DLEP VI+ ++   YR L++ E +        A NN+A G Y  G+++ +  +D + + +D    L+GF++ +++
Sbjct:    3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKEGMLEDFATQG--GDRKDVFFYQADDEHYIPRALLLDLEPRVINGIQNSEYRNLYNHENVFVADHGGGAGNNWASG-YHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSI 141          
The following BLAST results are available for this feature:
BLAST of DY260462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
TBG_ENTHI1.896e-1834.97Tubulin gamma chain OS=Entamoeba histolytica PE=2 ... [more]
TBG_COPC72.164e-1833.10Tubulin gamma chain OS=Coprinopsis cinerea (strain... [more]
TBG2_EUPCR3.235e-1833.80Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG_PHYPA4.225e-1833.80Tubulin gamma chain OS=Physcomitrella patens GN=TU... [more]
TBG_DICDI4.225e-1834.51Tubulin gamma chain OS=Dictyostelium discoideum GN... [more]
TBG2_MOUSE4.225e-1834.51Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=... [more]
TBG1_EUPCR5.518e-1833.10Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG1_RAT7.206e-1834.51Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg... [more]
TBG1_MOUSE7.206e-1834.51Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=... [more]
TBG_ANEPH1.229e-1733.80Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260462 ID=DY260462; Name=DY260462; organism=Citrus clementina; type=EST; length=1189bp
GAGCAATACAAGATCATTTTCGCCGGTTTTTGAGATCGAACAACGTGGTT
TAGCTTTAAAGTGTAGGGGAACAGAAAGCAAAAGGGAGGAAATTAGGGTT
CTTGGGCTTGTGGGTATTTTGAAAAAGGCAAAGAAATGAGAGAAATTATA
AGTATACACATTGGGCAAGCTGGGATTCAAGTGGGGAATTCATGCTGGGA
GCTTTATTGCCTAGAACATGGCATTCATCCTGATGGCATGATGCCCAGTG
ACAATACAATAGGTGTAGCCCATGATGCCTTCAATACATTCTTCAGTGAA
ACCAGTGCTGGCAGGCATGTGCCCAGAGCTGTGTTTGTTGATCTTGAACC
AACTGTCATTGATGAAGTTAGAACGGGTAGCTACCGCCAGCTTTTCCACC
CAGAGCAGCTTATCTCTGGCAAGGAAGATGCTGCTAACAATTTTGCAAGA
GGGCATTATACTGTTGGGAAGGAAATTGTGGATCTTTGCCTTGATCGTGT
TCGAAAGTTATCTGATAACTGCACTGGGTTGCAAGGGTTTTTGGTGTTCA
ATGCTGTTGGGGGTGGTACTGGTTCCGGTCTGGGGTCGTTGTTACTGGAA
CGCCTATCTGTAGATTATGGAAAAGAAGTCAAAGCTTGGCTTCCCTATCT
ACCCCTCTCCTCAGGTATCAACCGCAGTTGTGGAGCCTTAAAACAGTGTT
CCGTCCACTCACTTCCCTCCTGAACACACACATGTTTGCCGTGCTATTGG
ACAATGAACCTATTTTGAACTTCGGCCAGAAATCCCAAAATATTGAAAGG
CCCACTTACCCAATTTTGAACCGCTTGGAAACCCCAAAATCCACCCCCCC
TTGAAACATTTCCTTGGGGGGTTTAAGGGGGCCAATAAGGGGGAAAATTA
ACAAATTCCCCAACCCCCCCCTTGCCCCCACCCCCCCGAACCCTTTTCTG
GCCCTTCCACCAAAGCCCCCCGCCTCACCCCGCGCGCGAAAAAAACAAAC
CTAAAAAACCACTTCTTTTTTCCCAAAAAAAACCCCCCCAATGCCGCCCT
TTTAACCCCCTCCAACAGGAAAAGGGGGCCCAAACAAAGCCCCCCCCCGC
GCGGCGGAGAAAAAGAATAAGGGCGCTTGCCGCGGCCCTTTTAATACGTA
ACCCCACAAGGAAAAAATAATTTTTTCTCCCTCCCCCCC
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