DY260462
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA1C_BOVIN (Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=1 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 1.042e-77 Identity = 123/166 (74.10%), Postives = 137/166 (82.53%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVK 633 MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANN+ARGHYT+GKEI+DL LDRVRKL+D CTGLQGFLVF++ VDYGK+ K Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSK 166 HSP 2 Score: 51.6026 bits (122), Expect = 1.042e-77 Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 2 Query: 623 KKSKLGFPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730 KKSKL F IYP+PQVSTAVVEP NS+ +TH EH+ Sbjct: 163 KKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHS 198
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBAT_ONCMY (Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1) HSP 1 Score: 261.151 bits (666), Expect = 1.359e-77 Identity = 122/166 (73.49%), Postives = 137/166 (82.53%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVK 633 MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+HVPRAVFVDLEPTV+DEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVDL LDRVRKLSD CTGLQGFL+F++ VDYGK+ K Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSK 166 HSP 2 Score: 51.6026 bits (122), Expect = 1.359e-77 Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 2 Query: 623 KKSKLGFPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730 KKSKL F IYP+PQVSTAVVEP NS+ +TH EH+ Sbjct: 163 KKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHS 198
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA_PLAYO (Tubulin alpha chain OS=Plasmodium yoelii yoelii GN=PY01155 PE=2 SV=2) HSP 1 Score: 259.225 bits (661), Expect = 3.014e-77 Identity = 120/166 (72.29%), Postives = 136/166 (81.93%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVK 633 MRE+ISIH+GQAGIQVGN+CWEL+CLEHGI PDG MP D DAFNTFFSET AG+HVPR VFVDLEPTV+DEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKE++D+CLDR+RKL+DNCTGLQGFL+F+AV VDYGK+ K Sbjct: 1 MREVISIHVGQAGIQVGNACWELFCLEHGIQPDGQMPPDQAGRANDDAFNTFFSETGAGKHVPRCVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEVIDVCLDRIRKLADNCTGLQGFLMFSAVGGGTGSGFGCLMLERLSVDYGKKSK 166 HSP 2 Score: 52.373 bits (124), Expect = 3.014e-77 Identity = 28/38 (73.68%), Postives = 29/38 (76.32%), Query Frame = 2 Query: 623 KKSKLGFPIYPSPQVSTAVVEP*NSVPSTHFPPEHTHV 736 KKSKL F +PSPQVSTAVVEP NSV STH EHT V Sbjct: 163 KKSKLNFCCWPSPQVSTAVVEPYNSVLSTHSLLEHTDV 200
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA_XENLA (Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2 SV=2) HSP 1 Score: 259.996 bits (663), Expect = 3.015e-77 Identity = 121/166 (72.89%), Postives = 137/166 (82.53%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVK 633 MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LDR+RKL+D CTGLQGFLVF++ VDYGK+ K Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSK 166 HSP 2 Score: 51.6026 bits (122), Expect = 3.015e-77 Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 2 Query: 623 KKSKLGFPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730 KKSKL F IYP+PQVSTAVVEP NS+ +TH EH+ Sbjct: 163 KKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHS 198
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA_TORMA (Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1) HSP 1 Score: 259.996 bits (663), Expect = 3.015e-77 Identity = 121/166 (72.89%), Postives = 137/166 (82.53%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVK 633 MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LDR+RKL+D CTGLQGFLVF++ VDYGK+ K Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSK 166 HSP 2 Score: 51.6026 bits (122), Expect = 3.015e-77 Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 2 Query: 623 KKSKLGFPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730 KKSKL F IYP+PQVSTAVVEP NS+ +TH EH+ Sbjct: 163 KKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHS 198
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA1C_RAT (Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tuba1c PE=1 SV=1) HSP 1 Score: 259.996 bits (663), Expect = 3.015e-77 Identity = 121/166 (72.89%), Postives = 137/166 (82.53%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVK 633 MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LDR+RKL+D CTGLQGFLVF++ VDYGK+ K Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSK 166 HSP 2 Score: 51.6026 bits (122), Expect = 3.015e-77 Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 2 Query: 623 KKSKLGFPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730 KKSKL F IYP+PQVSTAVVEP NS+ +TH EH+ Sbjct: 163 KKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHS 198
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA1C_MOUSE (Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c PE=1 SV=1) HSP 1 Score: 259.996 bits (663), Expect = 3.015e-77 Identity = 121/166 (72.89%), Postives = 137/166 (82.53%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVK 633 MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LDR+RKL+D CTGLQGFLVF++ VDYGK+ K Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSK 166 HSP 2 Score: 51.6026 bits (122), Expect = 3.015e-77 Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 2 Query: 623 KKSKLGFPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730 KKSKL F IYP+PQVSTAVVEP NS+ +TH EH+ Sbjct: 163 KKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHS 198
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA1C_HUMAN (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1) HSP 1 Score: 259.996 bits (663), Expect = 3.015e-77 Identity = 121/166 (72.89%), Postives = 137/166 (82.53%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVK 633 MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LDR+RKL+D CTGLQGFLVF++ VDYGK+ K Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSK 166 HSP 2 Score: 51.6026 bits (122), Expect = 3.015e-77 Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 2 Query: 623 KKSKLGFPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730 KKSKL F IYP+PQVSTAVVEP NS+ +TH EH+ Sbjct: 163 KKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHS 198
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA1C_CRIGR (Tubulin alpha-1C chain OS=Cricetulus griseus GN=TUBA1C PE=2 SV=1) HSP 1 Score: 259.996 bits (663), Expect = 3.015e-77 Identity = 121/166 (72.89%), Postives = 137/166 (82.53%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVK 633 MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LDR+RKL+D CTGLQGFLVF++ VDYGK+ K Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSK 166 HSP 2 Score: 51.6026 bits (122), Expect = 3.015e-77 Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 2 Query: 623 KKSKLGFPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730 KKSKL F IYP+PQVSTAVVEP NS+ +TH EH+ Sbjct: 163 KKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHS 198
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBA1B_RAT (Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tuba1b PE=1 SV=1) HSP 1 Score: 259.996 bits (663), Expect = 3.015e-77 Identity = 121/166 (72.89%), Postives = 137/166 (82.53%), Query Frame = 1 Query: 136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKEVK 633 MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LDR+RKL+D CTGLQGFLVF++ VDYGK+ K Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSK 166 HSP 2 Score: 51.6026 bits (122), Expect = 3.015e-77 Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 2 Query: 623 KKSKLGFPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730 KKSKL F IYP+PQVSTAVVEP NS+ +TH EH+ Sbjct: 163 KKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHS 198 The following BLAST results are available for this feature:
BLAST of DY260462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 408
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260462 ID=DY260462; Name=DY260462; organism=Citrus clementina; type=EST; length=1189bpback to top |