DY260462

Overview
NameDY260462
Unique NameDY260462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1189
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 9.739e-15
Identity = 46/143 (32.17%), Postives = 76/143 (53.15%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            MRE++++ +GQ G Q+G   W+  C EHGI   G++     +G   D  + FF +      VPRA+ VDLEP VI +  +      F  E +    E   A NN+  G Y VGK + +  +D +++ ++ C  L+ FL+ +++
Sbjct:    1 MREVVTLQVGQCGNQMGAEFWKTLCKEHGISMCGVLQDSRDLG---DRKDVFFYQADDNVFVPRAILVDLEPRVISQAPS-----FFSQESIFLSNEGGGAGNNWGHG-YCVGKAMGNDVIDMIQREAEGCDALETFLLLHSI 134          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.245e-14
Identity = 47/142 (33.10%), Postives = 75/142 (52.82%), Query Frame = 1
Query:  142 EIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMP-SDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            EII+I +GQ G  VG   W     EHGI  DG    +D+   +  D  N FF + +  R+VPRA+ +DLEP  + +V++ S+  LF+P       E   A N+++ G Y  G +  D  +D + +  D+    +GF + ++V
Sbjct:    4 EIITIQVGQCGNHVGKYFWNQLLKEHGIDKDGYSKYNDDLTHIREDDTNPFFKQITNNRYVPRAIMIDLEPAAVTDVQS-SFNDLFNPRNTWVSSEGLGAGNSWSTG-YDRGVQNQDRIMDIIDRELDSTDNFEGFQLLHSV 143          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBB_HALDI (Tubulin beta chain (Fragment) OS=Haliotis discus PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.751e-13
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 1
Query:  367 VRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGF 540
            VR+G + Q+F P+  + G+  A NN+A+GHYT G E+VD  LD VRK +++C  LQGF
Sbjct:    2 VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 59          

HSP 2 Score: 30.8018 bits (68), Expect = 3.751e-13
Identity = 15/30 (50.00%), Postives = 19/30 (63.33%), Query Frame = 2
Query:  641 FPIYPSPQVSTAVVEP*NSVPSTHFPPEHT 730
            F + PSP+VS  VVEP N+  S H   E+T
Sbjct:   93 FSVVPSPKVSDTVVEPYNATLSVHQLVENT 122          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 7.717e-12
Identity = 45/141 (31.91%), Postives = 69/141 (48.94%), Query Frame = 1
Query:  142 EIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQ--LISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            EII++  GQ G  VG   W     EH I  DG+    ++     D    FF E S  +  PRA+ +D EP+VI +V   ++R  F P    + S    A N++A G Y +G    D  L+++ K  D+    +GF + ++V
Sbjct:    4 EIITLQAGQCGNHVGKFLWSQLAKEHAIGTDGLSQLPDSSTERDDDTKPFFRENSRNKFTPRAIMMDSEPSVIADVE-NTFRGFFDPRNTWVASDGASAGNSWANG-YDIGTRNQDDILNKIDKEIDSTDNFEGFQLLHSV 142          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.316e-11
Identity = 50/143 (34.97%), Postives = 71/143 (49.65%), Query Frame = 1
Query:  142 EIISIHIGQAGIQVGNSCWELYCLEHGIHPDG--MMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKED--AANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            EIISI +GQ G QVG   W     EHGI  DG  + P D  + V  D  N FF +    R  PRA+  DLEP+ I +V+   +   F+   +   KE+  A N ++ G Y  G E  D  ++ + K  D     +GF + ++V
Sbjct:    4 EIISIQVGQCGNQVGKQFWGQLAREHGIGVDGQSLHPEDANV-VREDDTNVFFRQNDHNRFTPRALLYDLEPSAIGDVQ-NCFPGFFNERNVWISKEELGAGNTWSIG-YDYGLEKQDEFMNMIDKEIDATGNFEGFQLIHSV 143          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.002e-11
Identity = 44/155 (28.39%), Postives = 75/155 (48.39%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSET-----------SAGRHVP---RAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            M + + + +GQ G Q+G   W+L   EH         + N  G+  +A ++FF              S G+      RAV +D+E  V++E+  G  R +F  +QLI+    + NN+A GH   G    D  L++ RK +++C  LQ F + +++
Sbjct:    1 MTQSVVVQVGQCGNQIGCCFWDLALREHA--------AVNQKGIYDEAISSFFRNVDTRVVGDGGSISKGKICSLKARAVLIDMEEGVVNEILQGPLRDVFDTKQLITDISGSGNNWAVGHKVFGSLYQDQILEKFRKSAEHCDCLQCFFIIHSM 147          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.533e-11
Identity = 41/141 (29.08%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  145 IISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVID-EVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            ++++H+GQ G Q+  + W+    EHGI+  G    ++ +   +D  +  F +     +VPRAV VDLEP VI+  +++ ++  LF+ + +        A NN+A G Y  G+E+ +  +D + + ++N   L G L  ++V
Sbjct:    7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSV 143          
BLAST of DY260462 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.533e-11
Identity = 45/155 (29.03%), Postives = 75/155 (48.39%), Query Frame = 1
Query:  136 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSET-----------SAGRHVP---RAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAV 558
            M + + + +GQ G Q+G   W+L   EH         + N  G+  DA ++FF              S GR      RAV +D+E  V++E+  G  R +F  +QLI+    + NN+A GH   G    +  L+++RK ++ C  LQ F + +++
Sbjct:    1 MTQSVVVQVGQCGNQIGCCFWDLALREHA--------AVNQKGIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSM 147          
The following BLAST results are available for this feature:
BLAST of DY260462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
TBG_ENCCU9.739e-1532.17Tubulin gamma chain OS=Encephalitozoon cuniculi GN... [more]
TBG_CANGA8.245e-1433.10Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE... [more]
TBB_HALDI3.751e-1350.00Tubulin beta chain (Fragment) OS=Haliotis discus P... [more]
TBG_YEAST7.717e-1231.91Tubulin gamma chain OS=Saccharomyces cerevisiae GN... [more]
TBG_ASHGO1.316e-1134.97Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=... [more]
TBE_HUMAN5.002e-1128.39Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBG_CAEEL6.533e-1129.08Tubulin gamma chain OS=Caenorhabditis elegans GN=t... [more]
TBE_MOUSE6.533e-1129.03Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260462 ID=DY260462; Name=DY260462; organism=Citrus clementina; type=EST; length=1189bp
GAGCAATACAAGATCATTTTCGCCGGTTTTTGAGATCGAACAACGTGGTT
TAGCTTTAAAGTGTAGGGGAACAGAAAGCAAAAGGGAGGAAATTAGGGTT
CTTGGGCTTGTGGGTATTTTGAAAAAGGCAAAGAAATGAGAGAAATTATA
AGTATACACATTGGGCAAGCTGGGATTCAAGTGGGGAATTCATGCTGGGA
GCTTTATTGCCTAGAACATGGCATTCATCCTGATGGCATGATGCCCAGTG
ACAATACAATAGGTGTAGCCCATGATGCCTTCAATACATTCTTCAGTGAA
ACCAGTGCTGGCAGGCATGTGCCCAGAGCTGTGTTTGTTGATCTTGAACC
AACTGTCATTGATGAAGTTAGAACGGGTAGCTACCGCCAGCTTTTCCACC
CAGAGCAGCTTATCTCTGGCAAGGAAGATGCTGCTAACAATTTTGCAAGA
GGGCATTATACTGTTGGGAAGGAAATTGTGGATCTTTGCCTTGATCGTGT
TCGAAAGTTATCTGATAACTGCACTGGGTTGCAAGGGTTTTTGGTGTTCA
ATGCTGTTGGGGGTGGTACTGGTTCCGGTCTGGGGTCGTTGTTACTGGAA
CGCCTATCTGTAGATTATGGAAAAGAAGTCAAAGCTTGGCTTCCCTATCT
ACCCCTCTCCTCAGGTATCAACCGCAGTTGTGGAGCCTTAAAACAGTGTT
CCGTCCACTCACTTCCCTCCTGAACACACACATGTTTGCCGTGCTATTGG
ACAATGAACCTATTTTGAACTTCGGCCAGAAATCCCAAAATATTGAAAGG
CCCACTTACCCAATTTTGAACCGCTTGGAAACCCCAAAATCCACCCCCCC
TTGAAACATTTCCTTGGGGGGTTTAAGGGGGCCAATAAGGGGGAAAATTA
ACAAATTCCCCAACCCCCCCCTTGCCCCCACCCCCCCGAACCCTTTTCTG
GCCCTTCCACCAAAGCCCCCCGCCTCACCCCGCGCGCGAAAAAAACAAAC
CTAAAAAACCACTTCTTTTTTCCCAAAAAAAACCCCCCCAATGCCGCCCT
TTTAACCCCCTCCAACAGGAAAAGGGGGCCCAAACAAAGCCCCCCCCCGC
GCGGCGGAGAAAAAGAATAAGGGCGCTTGCCGCGGCCCTTTTAATACGTA
ACCCCACAAGGAAAAAATAATTTTTTCTCCCTCCCCCCC
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