DY260463

Overview
NameDY260463
Unique NameDY260463
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1268
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260463_ssr411 microsatellite DY260463_ssr411:411..422. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10970 contig Ccv1_Contig10970:793..2060. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY260463 vs. ExPASy Swiss-Prot
Match: HTPG_ORITB (Chaperone protein htpG OS=Orientia tsutsugamushi (strain Boryong) GN=htpG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.158e-11
Identity = 37/124 (29.84%), Postives = 71/124 (57.26%), Query Frame = 2 
Query:    5 ELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 376
            EL ++  +++ +Y  F+ +F   LK G+ E + +  KL ++  + S    D+  SL +Y+  +K  Q +IYYITG+  +A+++SP +E L  +  +VL + D +D++ V   +++    L S T
Sbjct:  350 ELEKQKTKDQGEYETFWNNFGAVLKEGLCEGTADVDKLLKICLFRSALQ-DKFISLDEYIANLKSEQKNIYYITGDDLEALKSSPQIEGLLSRNIDVLLLTDDVDKFWVMVTRKYNDYVLKSVT 472
[Close]
BLAST of DY260463 vs. ExPASy Swiss-Prot
Match: HTPG_SULDN (Chaperone protein htpG OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=htpG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.430e-11
Identity = 37/122 (30.33%), Postives = 70/122 (57.38%), Query Frame = 2 
Query:    5 ELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGE-SKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLV 367
            EL +    + + Y+ F+  F   LK G++ D  N+  + ELL++++  S DE   +++++  + E + +IYYITG+ S   +++SP LE+ K +G  VL + + ID      + E++  KL+
Sbjct:  366 ELAKMAKRDAKKYDDFFTQFGNVLKEGLYSDYGNRENILELLKFNTINS-DEKIMIEEFIKNVDETKKEIYYITGKTSLSMLKSSPALERFKSRGINVLVLNEEIDTIIFPMVTEYKEYKLI 486
The following BLAST results are available for this feature:
BLAST of DY260463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
HTPG_ORITB4.158e-1129.84Chaperone protein htpG OS=Orientia tsutsugamushi (... [more]
HTPG_SULDN5.430e-1130.33Chaperone protein htpG OS=Sulfurimonas denitrifica... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260463 ID=DY260463; Name=DY260463; organism=Citrus clementina; type=EST; length=1268bp
CATTGAGCTCTTCCAAGAGATTGCTGAGAACAAGGAAGATTACAACAAGT
TTTATGAGTCATTCTCTAAGAACCTAAAGCTTGGTATCCATGAGGACTCC
ACCAACAAGACCAAGCTTGCTGAGCTGCTCCGATACCATTCCACCAAGAG
TGGTGATGAGTTGACTAGCTTGAAGGATTATGTGACCAGAATGAAGGAAG
GCCAGAATGATATCTACTACATCACTGGTGAGAGCAAGAAGGCTGTTGAG
AACTCCCCATTTCTTGAGAAGCTCAAGAAGAAGGGCTATGAAGTGCTCTA
CATGGTTGATGCCATAGATGAGTACGCTGTTGGTCAGCTCAAGGAGTTTG
AGGGAAAGAAGCTTGTCTCAGCAACCAAAGAAGGTCTCAAGCTTGACGAG
AGTGAAGATGAGAAGAAGAAGAAGGAAACCTTGAAGGAGAAATTTGAGGG
TCTCTGCAAGGTGATCAAGGATGTTTTGGGTGACAAGGTCGAGAAGGTTG
TGGTGTCTGACCGTGTTGTTGACTCACCCTGCTGTTTGGTGACTGGTGAG
TATGGATGGACAGCCAACATGGAGAGGATCATGAAGGCTCAGGCCTTGAG
AGACAACAGCATGGCTGGTTACATGTCCAGCAAGAAAACCATGGAGATCC
ATCCGGAAGAACCCATCATGGAGGAACTCAGGAAGAGGGCTGATGCTGAC
CAGAATGACACGTTCGGTGAAGGGACCTTGTCCCTCCCGCTTCTTGAAAC
TGCCCTCCCCCCCTTCTGGTTTCCGCCCTTGGATGACCCCAACCCCTTTT
CCGCCACCCAAACCCTCGGGAAGTTGAAACCCGGGGCCCAGCCCTCCAGG
AGGGAGCCTGGGGATACCCGCAGCCCGACCTGCCCCCGTTCGAGGACACC
GCCCCCACATCCCCGACCGCCCCCCAGACGGACGCAATTTCATATCACAA
GCCCCCAGAGATCCTGGCCCATCACGCCCCCTTTTTTCCGGCAAAACCTT
TTAAAACCCGAGAGGATGTTCATATGATCCCTCCGCGCTTCCCGGTCGGG
TCGCATGCAGCGAGGGCCCGCGACCCCCCGACGACCCACCGCCACCGCTC
CCCACCCGCACATGGGAACGCGACCGCTTCACCCCATGCACTCCCACCCT
CCACGCACCCCACCACGCCCTGACCGAGGCTCCCTGCTCCGCCCTACCTC
GATCAAACTCACCCACCAGCCATCATCTACCTACCCATCTCACACGTACG
CGACCCATACGCCAGTTC
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