DY260467

Overview
NameDY260467
Unique NameDY260467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.261e-24
Identity = 57/153 (37.25%), Postives = 94/153 (61.44%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +S+ N+  W +E    AS    +N   +++GNK D+     +VV    A+ +  S G IP+ ET  K
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKSDLT--TKKVVDNTTAKEFADSLG-IPFLETSAK 153          

HSP 2 Score: 22.7126 bits (47), Expect = 9.261e-24
Identity = 11/24 (45.83%), Postives = 13/24 (54.17%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNALK 640
            L  SAK   NVE+AF  +A    K
Sbjct:  148 LETSAKNATNVEQAFMTMAAEIKK 171          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.261e-24
Identity = 57/153 (37.25%), Postives = 94/153 (61.44%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +S+ N+  W +E    AS    +N   +++GNK D+     +VV    A+ +  S G IP+ ET  K
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKSDLT--TKKVVDNTTAKEFADSLG-IPFLETSAK 153          

HSP 2 Score: 22.7126 bits (47), Expect = 9.261e-24
Identity = 11/24 (45.83%), Postives = 13/24 (54.17%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNALK 640
            L  SAK   NVE+AF  +A    K
Sbjct:  148 LETSAKNATNVEQAFMTMAAEIKK 171          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RBH1B_ARATH (Ras-related protein RABH1B OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.888e-24
Identity = 61/151 (40.40%), Postives = 90/151 (59.60%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K +  EDR   LQ+WDTAGQERF+SL  ++ R +   V+VYDV S +SF N   W +E   +       +   V++GNK D+       + E +A+   A + N+ + ET  K
Sbjct:   11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERG----SDVIVVLVGNKTDLVDKRQVSIEEAEAK---ARELNVMFIETSAK 154          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 108.612 bits (270), Expect = 1.202e-23
Identity = 55/150 (36.67%), Postives = 93/150 (62.00%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L K++++GDSGVGK+++++++   +F  + K+TIG +F T+  Q E +    QIWDTAGQER++++  A+YRGA   +LVYD+   ++FDN+  W  E    A      N   ++ GNK D++  + R V+E+  ++  A K  + + ET
Sbjct:   12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD----SNIVIMMAGNKSDLN--HLRSVAEEDGQS-LAEKEGLSFLET 154          

HSP 2 Score: 23.483 bits (49), Expect = 1.202e-23
Identity = 13/24 (54.17%), Postives = 14/24 (58.33%), Query Frame = 2
Query:  551 KEIFLTLRPSAKEGINVEEAFQCI 622
            KE    L  SA E  NVE+AFQ I
Sbjct:  146 KEGLSFLETSALEATNVEKAFQTI 169          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.205e-23
Identity = 57/153 (37.25%), Postives = 94/153 (61.44%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK D+     +VV    A+ +    G IP+ ET  K
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKSDLT--TKKVVDFTTAKEYADQLG-IPFLETSAK 156          

HSP 2 Score: 22.3274 bits (46), Expect = 1.205e-23
Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIA 625
            L  SAK   NVE+AF  +A
Sbjct:  151 LETSAKNATNVEQAFMTMA 169          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.205e-23
Identity = 56/153 (36.60%), Postives = 94/153 (61.44%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +S+ N+  W +E    AS    +N   +++GNK D+     +VV    A+ +  S G +P+ ET  K
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKSDLT--TKKVVDNTTAKEFADSLG-VPFLETSAK 153          

HSP 2 Score: 22.7126 bits (47), Expect = 1.205e-23
Identity = 11/24 (45.83%), Postives = 13/24 (54.17%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNALK 640
            L  SAK   NVE+AF  +A    K
Sbjct:  148 LETSAKNATNVEQAFMTMAAEIKK 171          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.205e-23
Identity = 57/153 (37.25%), Postives = 94/153 (61.44%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +S+ N+  W +E    AS    +N   +++GNK D+     +VV    A+ +  S G IP+ ET  K
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYAS----ENVNKLLVGNKSDLT--TKKVVDNTTAKEFADSLG-IPFLETSAK 153          

HSP 2 Score: 22.7126 bits (47), Expect = 1.205e-23
Identity = 11/24 (45.83%), Postives = 13/24 (54.17%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNALK 640
            L  SAK   NVE+AF  +A    K
Sbjct:  148 LETSAKNATNVEQAFMTMAAEIKK 171          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.205e-23
Identity = 59/153 (38.56%), Postives = 94/153 (61.44%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGKT ++ ++ +  F+  + +TIG DF  K V+   +   LQIWDTAGQERF ++  ++YRGA   +LVYD+ + KSF+N++ W       A+    ++   ++LGNK D++  + RVV + K     A +  I +FET  K
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHAN----EDVERMLLGNKCDME--DKRVVLKSKGEQ-IAREHAIRFFETSAK 154          

HSP 2 Score: 23.8682 bits (50), Expect = 1.205e-23
Identity = 10/21 (47.62%), Postives = 16/21 (76.19%), Query Frame = 2
Query:  578 SAKEGINVEEAFQCIAKNALK 640
            SAK  IN+E+AF  +A++ L+
Sbjct:  152 SAKANINIEKAFLTLAEDILQ 172          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.291e-23
Identity = 58/153 (37.91%), Postives = 95/153 (62.09%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            ++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  + ++ + +   LQ+WDTAGQERF+++  A+YRGA   VL+YDV   +SF+N+ NW +     A+    ++    ++GNK D D  N +V  E+      A+K N+P+ E   K
Sbjct:   14 IMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHAN----EDAQIFLVGNKCD-DEVNRQVSKEQGQE--LAAKLNVPFLEASAK 159          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.564e-23
Identity = 61/153 (39.87%), Postives = 92/153 (60.13%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K+I++GDSG GK+SL+ ++ +  +S  Y +TIG DF  K V+ ++    LQIWDTAGQERF+++   +YRGA   + VYDV +  SFD++    E +L         N   +++GNKID+   +SRVV   +A+   A + N+ Y E   K
Sbjct:    7 LFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHIT---ETWLQDIDKYATSNVCKLLIGNKIDL--VDSRVVLADEAK-HVAEQNNMNYIEASAK 153          

HSP 2 Score: 23.0978 bits (48), Expect = 1.564e-23
Identity = 14/24 (58.33%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNALK 640
            +  SAK   NVE+AF  IAK ALK
Sbjct:  148 IEASAKTDSNVEKAFTTIAK-ALK 170          
The following BLAST results are available for this feature:
BLAST of DY260467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1B_HUMAN9.261e-2437.25Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_BOVIN9.261e-2437.25Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
RBH1B_ARATH9.888e-2440.40Ras-related protein RABH1B OS=Arabidopsis thaliana... [more]
RAA2C_ARATH1.202e-2336.67Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RAB1A_LYMST1.205e-2337.25Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RAB1B_MOUSE1.205e-2336.60Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1B_MACFA1.205e-2337.25Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RAB10_DISOM1.205e-2338.56Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
SEC4_CANAL1.291e-2337.91Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RAB1_THEAN1.564e-2339.87Ras-related protein Rab-1 OS=Theileria annulata GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260467 ID=DY260467; Name=DY260467; organism=Citrus clementina; type=EST; length=1301bp
CGCACGCAGAGCCTCTTTAACAACTACGGAGCACGTCAAAACGATCAACT
GATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGATTTTGCCCCA
GAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATCATCCTCGGC
GACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGTAAATAAGAA
GTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCT
GGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGA
TTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACC
TCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCA
GACAATTTCCCCTTTGTTGTTTTAGGAAACAAGATTGATGTAGATGGTGG
AAACAGTAGGGTGGTTTCGGAGAAGAAGGCTCGAGCCTGGTGTGCCTCCA
AAGGAAATATTCCTTACTTTGAGACCCTCTGCAAAAGAAGGCATTAATGT
GGAAGAAGCTTTCCAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGG
AGGAACAGATACACCTTGCCGGACACCATTGATGTTGGAACCCGCCCCCC
GCCCAGGGCCAGTGGAAGCAAGTGCCAAAGATATGGGCCAATTTTCTTCA
AGGACCCTCAACCACTTACAGAAATTGATTGGCCCTTTATAACATTTTTC
ATGGGGAACGCAAAGGGTTGCGGTGCAATCTAATGCTTGGGGCCAACCAA
CCCGGTCCCTCCCACCCACCTCCCCTCATCTGGTCCCTGGACTCGCCCCT
CAACCCCACCCATCCACTCGTACACTGCCTCCCCCCCCCCGCACGCCATC
CTGACTCTCCCCTATCCCGCGCAACCCGCCCGTTGGTCCTCACCCCCCTC
TATGCATCTCCCCCACCAGGACCAGCCATACAAGATCCACAGGCACAACA
CTTCCCTCTCTACACATCACTCTGCCCCTTCATGCCCAACCACTACGACC
TACATCACAACTCCCATCCACGACACAACCACCACATCCCCCCCCCCACC
ACACACCCCGACTCACTACTCCAGACACCTCCCCCCGCTGCACTCCTCCA
CAGACCCAGGCCCTGCATACCACACGCCGCCTGAACACACCACACCCCAA
CACTACATGCCCACACACACCGTACAGCCTCTCGTCGCCCATGCACGGAC
C
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